mRNA_H-elongata_contig62560.13827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62560.13827.1
Unique NamemRNA_H-elongata_contig62560.13827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: D8LB56_ECTSI (Glyoxalase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB56_ECTSI)

HSP 1 Score: 508 bits (1308), Expect = 2.650e-173
Identity = 261/320 (81.56%), Postives = 283/320 (88.44%), Query Frame = 1
Query:    1 QGYSWAAAGGGGILISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFACNRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEKLQHTAGVTSAVTTPEEVAEAVAAA-GDGVVLLDFGAGWCKNCKKMLPAVEKFASGPLKNKLKVLTVDIDEAEELADEYDVSGVPSFVALRGGSGKKEADYKGNDPAALEAKVSAL 957
            +GY+ AAA GGG+LISGPDGYKYKA+P++EGRKERFVSVGL+VSDL +STAYWCDLLGMSKFS PAP S+ G+G   G   ETVGY EEQVKLDLLQ        PIDHGLASGR+AFAC+ VPPIHSEAAAA SG VITPPLTLPTPGKADVVVTILGDPDGYEIC+VEA AFYQLAEPKYDVIDF  RATRGGDGAAPPK EKLQH AGVT+AVTTPEEVAEAVAAA GDG+VLLDFGAGWCKNCKKM+PA+EK A+GPL  KLKVLTVDIDEA+ELADEYDVSGVP+FVALRGG G K  +YKGNDPAALEAK+SAL
Sbjct:  110 EGYACAAASGGGVLISGPDGYKYKAIPSIEGRKERFVSVGLKVSDLPASTAYWCDLLGMSKFSAPAPVSEPGDG--VGLLSETVGYGEEQVKLDLLQAPGAEK-TPIDHGLASGRIAFACDLVPPIHSEAAAAASGTVITPPLTLPTPGKADVVVTILGDPDGYEICFVEAVAFYQLAEPKYDVIDFESRATRGGDGAAPPKSEKLQHAAGVTAAVTTPEEVAEAVAAASGDGLVLLDFGAGWCKNCKKMVPAIEKLATGPLGEKLKVLTVDIDEADELADEYDVSGVPTFVALRGGRGDKADEYKGNDPAALEAKISAL 426          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A0M0J531_9EUKA (Glyoxalase domain-containing protein 4-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J531_9EUKA)

HSP 1 Score: 276 bits (706), Expect = 4.420e-83
Identity = 158/309 (51.13%), Postives = 202/309 (65.37%), Query Frame = 1
Query:   28 GGGILISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFACNRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKMLPAVEKFASGPLKNKLKVLTVDIDEAEELADEYDVSGVPSFVALRGGSGKKEADYKGNDPAALEAKVSA 954
            GG  +I GPD ++YK V    GR ER ++VGLR +DLA++  YWCD+LGM+ F  PA   DAG   +      TVG+A EQ  L   Q +DV   AP+DH LASGR+A +C  V P +  A A+G G ++  P+TLPTPGKADVVVTIL DPDGYEIC+V    FY LA+P YD +++  RATRGGDGAAPPK ++ +H A    AVT   +V+   A++  GVV+LDFGAGWCKNCK +LP VE  A+      +   TVDIDEA EL + Y ++ VP FV L+GG+  K  +Y G+    LEAKV A
Sbjct:  122 GGMPVIKGPDNFRYKIVEPSAGRAERILAVGLRSTDLAATKQYWCDVLGMTVFPTPA-GCDAGHKSSL-----TVGWAAEQTHL---QFIDVGDSAPMDHALASGRIANSCRAVYPFYEAAEASGKGSIMNKPITLPTPGKADVVVTILADPDGYEICFVGDIGFYDLAKPLYDKVNWELRATRGGDGAAPPKPDQ-KHQAKGLRAVTESSQVSSLAASSATGVVVLDFGAGWCKNCKSILPFVETLATAL--PDVAFATVDIDEAGELVEAYQITAVPHFVVLKGGA--KVDEYVGSKGTDLEAKVRA 416          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S3UXG7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG7_HETAK)

HSP 1 Score: 259 bits (662), Expect = 1.170e-74
Identity = 154/306 (50.33%), Postives = 191/306 (62.42%), Query Frame = 1
Query:   37 ILISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFAC--NRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKMLPAVEKFASGPLKNKLKVLTVDIDEAEELADEYDVSGVPSFVALRGGSGKKEADYKGNDPAALEAKV 948
            + I GPD Y Y+ +P V GR E F +V +RV+D+  +  Y+  LLG+ + S   P  D    G    A   VG+A EQV+L L+Q      G  +DH  +SGR+AFAC    VP IH +A  AG   ++TPPLTLPTPGKADVVVTIL DPDGYEIC+VE EAFY LA P YDVIDF ERA+RGGDGA PPK EKLQH A +              AA  D +V++DFGAGWCKNCKK+ PAV K A+    +    + VDI EAE+LA EY+VS VP  +  + G+  K  DY G+    + AKV
Sbjct:  116 LNIDGPDNYTYRIIPQVHGRTEEFATVCIRVADVEKAKDYYVSLLGLGEQST-FPGLDQLANGAPSCA---VGFAGEQVRLLLVQ---TEPGVAVDHAKSSGRIAFACPTGSVPGIHQKAKDAGE-TIMTPPLTLPTPGKADVVVTILADPDGYEICFVEDEAFYDLATPTYDVIDFKERASRGGDGAPPPKAEKLQHAAELKXXXXXXXXXXILRAAGPDRLVVVDFGAGWCKNCKKIAPAVGKMAA-KYADHADFVAVDISEAEDLAIEYEVSSVPRLLYFKNGA--KVDDYLGSTVGEIRAKV 410          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S3UZB1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZB1_HETAK)

HSP 1 Score: 220 bits (560), Expect = 1.110e-61
Identity = 130/247 (52.63%), Postives = 156/247 (63.16%), Query Frame = 1
Query:  214 GEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFAC--NRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKMLPAVEKFASGPLKNKLKVLTVDIDEAEELADEYDVSGVPSFVALRGGSGKKEADYKGNDPAALEAKV 948
            G  G  G     VG+A EQV L+L+++     GA +DH   SGR+AFAC    VP IH     AG   ++TPPLTLPT GKADVVVTIL DPDGYEIC+VE EAFY LA P YDVIDF ERA+RGGDGA PPK EKLQH A +              AA  D +V++DFGAGWCKNCKK+ PAV K A+    +    + VDI EAE+LA EY+VS VP  +  + G+  K  DY G+    + AKV
Sbjct:    1 GPRGAGGRRSRLVGFAGEQVMLELVEK----DGAAVDHAERSGRIAFACPTGSVPGIHQMVKDAGH-TIMTPPLTLPTEGKADVVVTILADPDGYEICFVEDEAFYDLATPTYDVIDFKERASRGGDGAPPPKAEKLQHAAELKXXXXXXXXXXILRAAGPDRLVVVDFGAGWCKNCKKIAPAVGKMAA-KYADHADFVAVDISEAEDLAIEYEVSSVPRLLYFKNGA--KVDDYLGSTVGEIRAKV 239          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A835YGN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN6_9STRA)

HSP 1 Score: 219 bits (558), Expect = 2.860e-60
Identity = 158/423 (37.35%), Postives = 200/423 (47.28%), Query Frame = 1
Query:   43 ISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDL------LQRLDVPAGAPIDHGLASGRVAFACNR--VPPIHS-------------------------------------------------------------------------------EAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKMLPAVEKFASGPLKNKLKVLTVDIDEAE-----------------------------ELADEYDVSGVPSFVALRGGSGKKEADYKGNDPAALEAKVSALFE 963
            ++GPDGY+++ VP ++GR ERFVSV +RVSD  +S  YWC LLG+++   P P  D         A  TVG+  +Q           LQ L   A AP+DH L+ GR AFAC    VP IH+                                                                               E    G G V+TPPLTLPTPGKADVVVTIL DPD YEIC+VE  AFY LA P YDV+D+  RAT GGDGA PPK  KL+H A VT  VTT E++ + V  AG   VLL+FGAGWCKNCKK+ PA+E+ AS     ++ V  VDIDEA+                             +LAD + V+ VP  + L+ G+  K  ++ G     L A V+   +
Sbjct:  122 VTGPDGYRFRIVPEIQGRAERFVSVAIRVSDANASEKYWCGLLGLTQQRSP-PGCDV-----SAQAQLTVGFGADQXXXXXXXXXVSLQLLQTAAAAPVDHALSGGRAAFACGTPAVPAIHAMVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERCLCG-GAVLTPPLTLPTPGKADVVVTILADPDDYEICFVEDAAFYDLATPTYDVVDWGLRATMGGDGAPPPKA-KLEHAASVTP-VTTEEDLDQLVKQAGGKAVLLEFGAGWCKNCKKLAPALEQLASQEAA-RMVVGAVDIDEAQXXXXXXXXXXXXXXXXXXXQDGTFNDDEFDLADAHGVTRVPHVLLLKAGA--KAWEHTGPTKEELMAGVARALQ 532          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S2ELB3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ELB3_TRICV)

HSP 1 Score: 202 bits (514), Expect = 4.300e-55
Identity = 117/237 (49.37%), Postives = 142/237 (59.92%), Query Frame = 1
Query:   40 LISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFACNRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGA-APPKGEKLQHTAGVTSAVTTPEEVAEA---VAAAGDGVVLLDFGAGWCKNC 738
            ++ GPDGY+Y  V    GR ERF  V LR SDL  +  YWC +LGM++F  PA  +D G GG       TVG+A +Q  L  +   D     P+DH LASGR+A AC  V P H+ A + G G V+ PP+TLPTPGKADVVVTIL DPDGYEIC+V  E FY LA P YD +D+  R  RGGDGA AP + E    T      + T   VAE     ++A  G   L+FGA WCKNC
Sbjct:  190 IVVGPDGYRYAIVDPAAGRAERFWGVCLRSSDLDKTREYWCGVLGMTEFPTPAGLADLGGGGRS----LTVGWAPDQAHLRFVDPGD---SVPVDHALASGRIANACRSVEPFHNAAVSTGLGGVLNPPVTLPTPGKADVVVTILTDPDGYEICFVGDEGFYDLAVPLYDKVDWDLRTRRGGDGAPAPGRKEATAGTKPGEGGIPTVTGVAETESLASSAPSGAADLEFGAMWCKNC 419          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S2V686_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V686_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.200e-50
Identity = 105/191 (54.97%), Postives = 126/191 (65.97%), Query Frame = 1
Query:   31 GGILISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFACNRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPP 603
            G  +ISGPD YKYK VP   G  ERFV+VGLRV  LA +  Y+ D+LGM +     P ++  +         T+G+  +QVKL L++  D   GA + H L+SGR+AFA   VPPI  EA       V TPPLTLPTPGKADVVVTIL D DGYEIC+VE EAFY LA PKYD+ID+ ERA+RG DGA PP
Sbjct:  174 GSGVISGPDNYKYKIVPECAGVAERFVAVGLRVKSLAKAKEYYGDILGMKEMEA-VPGTETSDPSV------TLGFGPDQVKLQLIEVAD---GAEVSHALSSGRIAFATKSVPPIF-EAVTEAKETVQTPPLTLPTPGKADVVVTILVDRDGYEICFVEDEAFYDLATPKYDIIDYQERASRGADGAPPP 353          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S4L734_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L734_9EUKA)

HSP 1 Score: 159 bits (401), Expect = 1.120e-41
Identity = 94/200 (47.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query:  310 GAPIDHGLASGRVAFACNR-VPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPK------GEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKMLPAVEKFASGPLKNKLKVLTVDIDEAEELADEYDVSGVPSFVALRGG 888
            G  +DH L+SGR+AFA    V PI  +   +G   V+TPPLTLPTPGKADVVVTIL D DGYEIC+VE   FY+LA P YD ID+  R  +GGDG   P       G+K+ H  G +   T         A  G+G+ ++D+ AGWCK CKK+ P VE  A G ++  ++  T+D+DE++E A +  VS VP+FV  +GG
Sbjct:    1 GKEVDHALSSGRIAFATRAGVKPIFDKVTESGD-TVLTPPLTLPTPGKADVVVTILADRDGYEICFVEEVGFYELATPTYDNIDWEARGKKGGDGNPLPTSTPIAHGDKMVHLEGESGLDT---------AKGGEGLAVVDWSAGWCKVCKKIAPEVEGLA-GKMEG-VRFYTMDVDESDEAAVQLGVSKVPAFVFFKGG 188          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S3UYM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM7_HETAK)

HSP 1 Score: 166 bits (419), Expect = 2.190e-41
Identity = 102/197 (51.78%), Postives = 120/197 (60.91%), Query Frame = 1
Query:   31 GGILISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASSTAYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLDVPAGAPIDHGLASGRVAFAC--NRVPPIHSEAAAAGSGKVITPPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEK 615
            G   I GPD Y ++ V       ERF  V LRVSDL  + AYWC LLG++KF  PA    A            VG+   QVKL L+Q  D   G  +DH  + GR+AFAC    VP I+ +   AG   V+ PPLTLPT GKADVVVTIL DPDGYEIC+VE EAFY LA P YDVID+ +R +RG DGA PP G+K
Sbjct:  256 GAQYIVGPDSYCFR-VAERRPAAERFQCVALRVSDLPRAEAYWCGLLGLAKFEVPAHLGVADPS-------LLVGFDGGQVKLQLIQVND---GHAVDHAQSGGRIAFACPTGSVPGIYQKVKDAGHA-VMPPPLTLPTEGKADVVVTILADPDGYEICFVEDEAFYDLATPLYDVIDWVDRESRGADGAPPPGGKK 440          
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Match: A0A7S2V7Q7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Q7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.580e-41
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  421 PPLTLPTPGKADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAPPKGEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKMLPAVEKFA 771
            PPLTLPTPGKADVVVTIL D DGYEIC+VE EAFY LA P YDVIDF ERATRGGDGA PP  +KL+H   +   V T E++ EA+ AAG  +V+LDFGAGWCKNC+++LP V   A
Sbjct:    1 PPLTLPTPGKADVVVTILVDRDGYEICFVEDEAFYDLATPTYDVIDFLERATRGGDGAPPPAVKKLEHVEEMPG-VETEEDLEEALKAAGKKLVVLDFGAGWCKNCQRILPTVNLMA 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62560.13827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB56_ECTSI2.650e-17381.56Glyoxalase domain containing protein n=2 Tax=Ectoc... [more]
A0A0M0J531_9EUKA4.420e-8351.13Glyoxalase domain-containing protein 4-like protei... [more]
A0A7S3UXG7_HETAK1.170e-7450.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UZB1_HETAK1.110e-6152.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YGN6_9STRA2.860e-6037.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2ELB3_TRICV4.300e-5549.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2V686_9STRA7.200e-5054.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4L734_9EUKA1.120e-4147.00Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S3UYM7_HETAK2.190e-4151.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V7Q7_9STRA3.580e-4167.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62560contigH-elongata_contig62560:2..3126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score512.7
Seed ortholog evalue1.3e-142
Seed eggNOG ortholog2880.D8LB56
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,COG0526@1,KOG0907@2759,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons3
Model size1863
Cds size966
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62560.13827.1prot_H-elongata_contig62560.13827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62560 899..3126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.2599862-UTR-H-elongata_contig62560:1..8981622931008.2599862-UTR-H-elongata_contig62560:1..898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62560 2..898 -
1691679660.244887-UTR-H-elongata_contig62560:1..8981691679660.244887-UTR-H-elongata_contig62560:1..898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62560 2..898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.278956-CDS-H-elongata_contig62560:898..11421622931008.278956-CDS-H-elongata_contig62560:898..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62560 899..1142 -
1691679660.2551632-CDS-H-elongata_contig62560:898..11421691679660.2551632-CDS-H-elongata_contig62560:898..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62560 899..1142 -
1622931008.2963014-CDS-H-elongata_contig62560:1999..24511622931008.2963014-CDS-H-elongata_contig62560:1999..2451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62560 2000..2451 -
1691679660.271006-CDS-H-elongata_contig62560:1999..24511691679660.271006-CDS-H-elongata_contig62560:1999..2451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62560 2000..2451 -
1622931008.317794-CDS-H-elongata_contig62560:2856..31261622931008.317794-CDS-H-elongata_contig62560:2856..3126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62560 2857..3126 -
1691679660.2785406-CDS-H-elongata_contig62560:2856..31261691679660.2785406-CDS-H-elongata_contig62560:2856..3126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62560 2857..3126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62560.13827.1

>prot_H-elongata_contig62560.13827.1 ID=prot_H-elongata_contig62560.13827.1|Name=mRNA_H-elongata_contig62560.13827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=322bp
QGYSWAAAGGGGILISGPDGYKYKAVPTVEGRKERFVSVGLRVSDLASST
AYWCDLLGMSKFSPPAPASDAGEGGTKGYACETVGYAEEQVKLDLLQRLD
VPAGAPIDHGLASGRVAFACNRVPPIHSEAAAAGSGKVITPPLTLPTPGK
ADVVVTILGDPDGYEICYVEAEAFYQLAEPKYDVIDFAERATRGGDGAAP
PKGEKLQHTAGVTSAVTTPEEVAEAVAAAGDGVVLLDFGAGWCKNCKKML
PAVEKFASGPLKNKLKVLTVDIDEAEELADEYDVSGVPSFVALRGGSGKK
EADYKGNDPAALEAKVSALFE*
back to top

mRNA from alignment at H-elongata_contig62560:2..3126-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62560.13827.1 ID=mRNA_H-elongata_contig62560.13827.1|Name=mRNA_H-elongata_contig62560.13827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3125bp|location=Sequence derived from alignment at H-elongata_contig62560:2..3126- (Himanthalia elongata Himel1 dioecious)
CAAGGTTACTCGTGGGCGGCGGCGGGCGGGGGCGGCATCTTGATCTCCGG GCCCGACGGTTACAAGTACAAAGCCGTCCCGACGGTCGAGGGACGGAAGG AGCGCTTCGTCTCGGTTGGCCTGCGAGTGTCGGACCTCGCGTCGTCTACC GCGTACTGGTGCGACCTCCTCGGTATGTCCAAGTTCTCGCCGCCGGCTCC TGCCAGTGATGCGGGAGAGGGAGGCACCAAGGGCTACGCGTGCGAGACCG TGGGGTATGCCGAGGAACAGGTGAAGAGACCGCGTCATAAAGACGATTCT GCGAACGCGAGTCGCCATTGCAACATGCGGGTGGGAAGGTGGAGGGGCGA GTGGGCGAAGCACTTTCTTGTTGCCCTAGCGCTTGCGTCCCAGCCTAGCC GATATGGCAGCCCGCAGAGCGATATAAACACGTTTGATGGTTTGCACAAC CAAAGAGGGTGTTTACCCTATTTCACCACCTCCTTCTTTTTTTCGGAGGA ATCAAAGCCTGTTGTTTTGATGACTTTTTTTGTGGTGAGGAAATAAAAAT GATCTAGATGTGCTTCTTGAGAGCAATGGAAGCCCCCTCCCTCGCTCCTT GCCGGGGGAAAGACCTGTATACAGTAATCCCCGCTGTCTCGGTTCCAATT GTTGCCTTCTTCGTTTTCTGATCAGGTTAAGCTCGACTTGCTCCAGCGGT TGGACGTGCCGGCGGGCGCCCCGATCGACCACGGCCTGGCTTCCGGCCGC GTCGCCTTCGCCTGCAACCGCGTGCCCCCCATCCACTCGGAAGCCGCGGC GGCGGGCAGCGGTAAGGTGATCACCCCTCCGCTGACCCTGCCCACGCCGG GTAAGGCGGACGTGGTGGTTACGATCCTGGGGGATCCCGACGGCTATGAG ATCTGCTACGTGGAGGCGGAGGCGTTCTACCAGCTGGCAGAGCCGAAATA CGACGTAATCGACTTCGCGGAGCGCGCAACGAGGGGTGGGGACGGGGCCG CACCGCCCAAGGGCGAGAAGCTGCAGCACACGGCCGGGGTGACTTCGGCG GTGACCACGCCGGAAGAGGTAGCTGAGGCGGTGGCGGCAGCCGGTGACGG CGTCGTCCTGTTGGACTTCGGCGCCGGGTAAGGGGACGTTGGGTTAGGAG ACGATGGTGGGGGGGAGGCGTGGACATATGCCCCCGCCTCCCCCCGAGTG TACGTCGACCCTTAAGGTCATTGCGTCAAAGGAAGGTGTTTTGACTGAAA TCTGAACGAATGTTTTTCATTTTCACGCGCTCTGCTTTTGACGCCGGACG AAGATTTCATCATTTTCCTCGGCGGTAAGGCACGTTGCGGCGCCGGCCAC GCGAACTGACGGCGATAGCGGGGAGTCGGAGGGGGGGCGGGGGGTGGATG CGTCACGTTCGATGCTTGCAATGCAACGACCAATGCTCAGCTCGGTCTCG TTAGCACAACGAGTCGACACACAATACCTATTCTCCCCTTTTCTGATTGA TGTTCCCCCGCAACCCCTATCCTGGTCATTTGCATATCTCATTAATATAT GGTCCCTTTTTTTAAAGCACTTTCGTTCCTCATTCCCCGCCTCGTCCCAC GCACCTCGGTCCAACGCAAAATACCACCACCGTTTTTTTTCGTAGATGGT AGTATTATTAGTAGGAGTAATAATTTCTAATAATAGTATCGAAGCAAGGT ATCCATCACATATTGACTCTGTGTAAATGTGTGTTATATCGCCTTTTTGT CGCGTGTATCACATAGTAACATATATGCATACCTACATGCACCATATTCA GCCTGGGTAGGGCGAACGAGCGGGCTTAAGTTGGACGGAACGGCCGAACC CGTCTCGCAAGACCAAATTGCCAGGCACGGACGGGGACGGAAAAAACATC CGATTGATTGATTGAAAAACTGCTATATGTGATGAGGTGATTACCGAACT CACACACATACTGTCCATCCATCCATCCATCTAGGTGGTGCAAGAACTGC AAGAAAATGTTGCCTGCCGTGGAAAAGTTCGCGTCCGGCCCGCTGAAGAA CAAACTCAAGGTCTTGACGGTGGATATCGACGAGGCTGAAGAACTGGCAG ACGAGTACGATGTGAGCGGGGTGCCGTCTTTCGTGGCGCTCCGGGGGGGT AGTGGTAAGAAGGAGGCGGATTACAAGGGTAACGATCCCGCGGCGCTGGA AGCCAAGGTCTCTGCGCTCTTCGAGTGATAATCGTAGCCTTGATTTTTTA TTCTGTTATCTTTTGCCTGCGGAGGTATTTTCCCTGGCGTTGGGATTGGA TGGAGGAAGAAAGGAGGGGTTGGGGGATGTTGGTAAGTTTTTACTGTAGT CTGGCGTTCTTCGTGCGACGGTTGGAGGTAATCGTGAACACACGAGAAGA ACGGTGGCGATGATGACGTGTTATGGTACCCATTGAGCGTGTTATACGTG GAACATATACGGTGATTTTTTTGCGAGGGAATGAAAGACACAGGAACAAT GTTCCATGATTTTGGGCGGATTCATGTTGATCACGACCTCTTCTTATTCT CTGTGTTTGTGTTCTAGCCTTGCGTCCACCACGGCACCGCGACTAGAGCT GTAATGGTTTTCTATATGTTGAGCCGATGTCACGTGCGCGCGCGCTCGAG ACTAGGCTACTGGATCAACGACGGGCAGAAATGAGATGCGGCCTCTGATC GTTCTTGAAAATTTCTATTGGCTTGCTTCCTGTTGACGTTGGGTGACGCC GGACGGGTTAGACGTAGTAACGCGACCTTTTACGCTGCGCTACACCATAA AGGCGGTGAGGACGAGGGTAGAGTTTCTCAGCACGAGCGCAAGGGGAGGA TAAAATTGCAATCAACTCGCTAATTTTTCTGACACACTTCACTCATCAAA ATTTCATCTACACACGTTGATGATTCATCGTCGTGGAAACTCTACTGCCG GAAGCCTACGCATATGCGTTGCCTCCCCCCCCCCCTCCCTGGCGCTTTTG GTAAAGCACTGTAAAATATACCTCCACATGCGTAATCAATCCCCCATATA CACAGCCGGTCGCCCCGGTGGTGTAAAGGGTCAAGCCGTCTTCCTTGATC CCCGGAAGTAGTGAGTTCGAATCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig62560:2..3126-

>mRNA_H-elongata_contig62560.13827.1 ID=mRNA_H-elongata_contig62560.13827.1|Name=mRNA_H-elongata_contig62560.13827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1932bp|location=Sequence derived from alignment at H-elongata_contig62560:2..3126- (Himanthalia elongata Himel1 dioecious)
CAAGGTTACTCGTGGGCGGCGGCGGGCGGGGGCGGCATCTTGATCTCCGG
GCCCGACGGTTACAAGTACAAAGCCGTCCCGACGGTCGAGGGACGGAAGG
AGCGCTTCGTCTCGGTTGGCCTGCGAGTGTCGGACCTCGCGTCGTCTACC
GCGTACTGGTGCGACCTCCTCGGTATGTCCAAGTTCTCGCCGCCGGCTCC
TGCCAGTGATGCGGGAGAGGGAGGCACCAAGGGCTACGCGTGCGAGACCG
TGGGGTATGCCGAGGAACAGCAAGGTTACTCGTGGGCGGCGGCGGGCGGG
GGCGGCATCTTGATCTCCGGGCCCGACGGTTACAAGTACAAAGCCGTCCC
GACGGTCGAGGGACGGAAGGAGCGCTTCGTCTCGGTTGGCCTGCGAGTGT
CGGACCTCGCGTCGTCTACCGCGTACTGGTGCGACCTCCTCGGTATGTCC
AAGTTCTCGCCGCCGGCTCCTGCCAGTGATGCGGGAGAGGGAGGCACCAA
GGGCTACGCGTGCGAGACCGTGGGGTATGCCGAGGAACAGGTTAAGCTCG
ACTTGCTCCAGCGGTTGGACGTGCCGGCGGGCGCCCCGATCGACCACGGC
CTGGCTTCCGGCCGCGTCGCCTTCGCCTGCAACCGCGTGCCCCCCATCCA
CTCGGAAGCCGCGGCGGCGGGCAGCGGTAAGGTGATCACCCCTCCGCTGA
CCCTGCCCACGCCGGGTAAGGCGGACGTGGTGGTTACGATCCTGGGGGAT
CCCGACGGCTATGAGATCTGCTACGTGGAGGCGGAGGCGTTCTACCAGCT
GGCAGAGCCGAAATACGACGTAATCGACTTCGCGGAGCGCGCAACGAGGG
GTGGGGACGGGGCCGCACCGCCCAAGGGCGAGAAGCTGCAGCACACGGCC
GGGGTGACTTCGGCGGTGACCACGCCGGAAGAGGTAGCTGAGGCGGTGGC
GGCAGCCGGTGACGGCGTCGTCCTGTTGGACTTCGGCGCCGGGTTAAGCT
CGACTTGCTCCAGCGGTTGGACGTGCCGGCGGGCGCCCCGATCGACCACG
GCCTGGCTTCCGGCCGCGTCGCCTTCGCCTGCAACCGCGTGCCCCCCATC
CACTCGGAAGCCGCGGCGGCGGGCAGCGGTAAGGTGATCACCCCTCCGCT
GACCCTGCCCACGCCGGGTAAGGCGGACGTGGTGGTTACGATCCTGGGGG
ATCCCGACGGCTATGAGATCTGCTACGTGGAGGCGGAGGCGTTCTACCAG
CTGGCAGAGCCGAAATACGACGTAATCGACTTCGCGGAGCGCGCAACGAG
GGGTGGGGACGGGGCCGCACCGCCCAAGGGCGAGAAGCTGCAGCACACGG
CCGGGGTGACTTCGGCGGTGACCACGCCGGAAGAGGTAGCTGAGGCGGTG
GCGGCAGCCGGTGACGGCGTCGTCCTGTTGGACTTCGGCGCCGGGTGGTG
CAAGAACTGCAAGAAAATGTTGCCTGCCGTGGAAAAGTTCGCGTCCGGCC
CGCTGAAGAACAAACTCAAGGTCTTGACGGTGGATATCGACGAGGCTGAA
GAACTGGCAGACGAGTACGATGTGAGCGGGGTGCCGTCTTTCGTGGCGCT
CCGGGGGGGTAGTGGTAAGAAGGAGGCGGATTACAAGGGTAACGATCCCG
CGGCGCTGGAAGCCAAGGTCTCTGCGCTCTTCGAGTGAGTGGTGCAAGAA
CTGCAAGAAAATGTTGCCTGCCGTGGAAAAGTTCGCGTCCGGCCCGCTGA
AGAACAAACTCAAGGTCTTGACGGTGGATATCGACGAGGCTGAAGAACTG
GCAGACGAGTACGATGTGAGCGGGGTGCCGTCTTTCGTGGCGCTCCGGGG
GGGTAGTGGTAAGAAGGAGGCGGATTACAAGGGTAACGATCCCGCGGCGC
TGGAAGCCAAGGTCTCTGCGCTCTTCGAGTGA
back to top