mRNA_H-elongata_contig62400.13811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62400.13811.1
Unique NamemRNA_H-elongata_contig62400.13811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 249 bits (636), Expect = 1.680e-74
Identity = 146/391 (37.34%), Postives = 229/391 (58.57%), Query Frame = 1
Query:    4 EPRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKFP--GAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAV 1164
            +P++  +AM+S + + W +A E EM  M  N V+  V   K    +G K +YK+K+G DGKVE YK RLVA+G+ Q EG+ Y E +SP +   SIR+LLA A+  D E+   D K AFL  ++ E +Y+  PE +        V +L ++IYGL QA R W  +F + +    F + +  PCV+ K++ G + + +V++VDDIL    D  +M      L ++F +K++G A Y +G  I R+R  R L + Q +Y++++++++N++K  +  +P   GV +LS+ + P+  +E+E M   PY  AVGA+M+T T TRPD+A A+    R+  N G  H K V  I++YL  TKD  + YG     L ++ YTD+ F    D  +S+SG V
Sbjct:   92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKIS-GSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYV 478          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 251 bits (640), Expect = 3.240e-74
Identity = 148/398 (37.19%), Postives = 232/398 (58.29%), Query Frame = 1
Query:    7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            P+   +A    + ++W+KA   E++ ++ N  +K V +P ++  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP +   S+R +LA   A+  E+   D   AFL  +++E +Y+E+PE  R+             V  L +++YGL QA R W       + + GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +L
Sbjct:   66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTR-GEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLL 460          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.680e-72
Identity = 148/398 (37.19%), Postives = 232/398 (58.29%), Query Frame = 1
Query:    7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            P+   +A    + ++W+KA   E++ ++ N  +K V +P ++  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP +   SIR +LA  SA+  E+   D   AFL   ++E +Y+E+ E  R+             V  L +++YGL QA R W       + ++GFE    +PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K+MG AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ +  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:  131 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLL 525          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 249 bits (635), Expect = 4.520e-71
Identity = 149/398 (37.44%), Postives = 231/398 (58.04%), Query Frame = 1
Query:    7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            P+   +A    + ++W+KA   E+  ++ N  +K V +P ++  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP +   SIR +L   SA+  E+   D   AFL   ++  +Y+E+PEE R+             V  L +++YGL QA R W      ++ ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++  A +    A + +KF++K+MG AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  ++K +MK  PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:  397 PKTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLL 791          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D)

HSP 1 Score: 239 bits (611), Expect = 1.620e-70
Identity = 145/391 (37.08%), Postives = 216/391 (55.24%), Query Frame = 1
Query:    4 EPRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEY--RKFPGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAV 1164
            EP N  +AM  P+ N W +A + E+  M +N V+     P ++  +  K ++K+K   DG V  YK RLVA+G+ Q++GV Y E +SP +   S+R++LA A+  D E+   D K AFL   + E LY+  PE +   K    V +L ++IYGLVQA R W  +F   + A GF Q     CV+ KV+ G +   ++++VDDIL    D   +D   A L + F +K++G A Y +G  I R+R  R + + Q  Y++ +++KF + +  K  +P   GV  LS A  P   K+KEEM   PY  A+G++M+    TRPD+  AV  V R+  N G  H  AV  I++YL  TKD  + YGG    L ++ Y D+ F   LD  +S +G V
Sbjct:   15 EPSNYEEAMAGPDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKVS-GSSVAFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGFLPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRPDVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRTKDMFLVYGGDE-ELVVKGYVDASFDTDLDDSKSQTGYV 402          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3V8M8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V8M8_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.860e-70
Identity = 144/386 (37.31%), Postives = 223/386 (57.77%), Query Frame = 1
Query:   46 NDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKF---NVKKGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            ++W+KA   E+  ++ N  +  V +P ++  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP +   SI  +LA  SA+  E+   D   AFL   ++E +Y+E+PE  R+             V  L +++YGL QA R W       + ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ K  +    A + +KF++K++G +R+ +G  I  + + R L I Q  Y ES+++KF   NVK     P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G     A +K+++YLL TKD GI Y G      +EAY+D D+    D RRSVSG +L
Sbjct:   21 DEWKKAIASELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKP-CLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLL 402          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 249 bits (637), Expect = 2.060e-70
Identity = 149/391 (38.11%), Postives = 225/391 (57.54%), Query Frame = 1
Query:    4 EPRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKFP--GAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAV 1164
            +P+N  +AM+  + N W++A E E+  M  N V+  V   K+   +G K +YK+K+G DGKVE YK RLVA+G+ Q EG+ Y E +SP +   SIR+LLA A+  D E+   D K AFL  ++ E +Y+  PE Y        V +L ++IYGL QA R W   F   +    F + +  PCV+ K   G   + +V++VDDIL    D   M      L ++F +K++G A Y +G  I R+R  R L + Q +Y++++++++N++   +  +P  +GV TLS+ D P+ P+E+E M   PY  AVGA+M+T T TRPD+A A+    R+  N G  H K V  I++YL  TKD  + YG     L ++ YTD+ F    D  +S+SG V
Sbjct:  703 DPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVY-KRFSGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESE--LKLKGYTDASFASDKDDSKSISGYV 1089          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.440e-70
Identity = 148/398 (37.19%), Postives = 232/398 (58.29%), Query Frame = 1
Query:    7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            P+   +A    + ++W+KA   E++ ++ N  +K V +P ++  +G + ++  K  + G+V +YK RLVA+G+ Q  G++Y E YSP +   SIR +LA  SA+  E+   D   AFL   ++E +Y+E+ E  R+             V  L +++YGL QA R W       + ++GFE    +PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K+MG AR+ +G  I  N + R L I Q  Y ES+++K   +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ +  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:  375 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 769          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3JDE6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JDE6_9STRA)

HSP 1 Score: 245 bits (626), Expect = 6.850e-70
Identity = 148/398 (37.19%), Postives = 234/398 (58.79%), Query Frame = 1
Query:    7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---PGAVGRLD------KAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSKIPATSGVPT--LSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            P+   +A    + ++W+KA   E++ ++ N  +K V +P ++  +G + ++  K  + G+V +YK RLVA+G+ Q  G  Y E YSP +   SIR +LA  SA+  E+   D   AFL   ++E +Y+E+PE  R+      A G  D      +++YGL QA R W       + ++GFE   ANPCV+ +  +G+ E +V ++VDD+L  ++ KA +    A + + F++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  ++ +K   T   P+  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD  I Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:  378 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGTDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVDCMLLQSLYGLKQASRVWNETIDKHLNSMGFEPADANPCVYTR-GEGDDECIVCLYVDDMLIASRQKAVIASVKAGIAENFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPCLTPLEPSVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 772          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 239 bits (609), Expect = 2.320e-69
Identity = 144/398 (36.18%), Postives = 227/398 (57.04%), Query Frame = 1
Query:    7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
            P+   +A    + ++W KA   E+  +V N  +K V +P ++  +G + ++  K  +  +  +YK RLVA+G+ Q   + Y E YSP +   SIR +L   SA+  E+   D   AFL   ++E +Y+E+PE  R+             V  L +++YGL  A R W +     + ++GFE   A+PCV+ +  +GE E +V ++VD++L  ++ KA +    A + +KF++K++G AR+ +G  I  N + R L I Q  Y ES+++ F  +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPD++ AV  + RF EN G  H  + +K ++YLL TKD GI Y GQ  G  +EAY+D+D+    D RRSVSG +L
Sbjct:   99 PKTYAEATTRQDQDEWMKAIASELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTR-GEGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLL 493          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3MAN7_TRIPR1.680e-7437.34Retrotransposon protein putative Ty1-copia subclas... [more]
A0A6A3Q908_9STRA3.240e-7437.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA2.680e-7237.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3YGI7_9STRA4.520e-7137.44Retrovirus-related Pol polyprotein from transposon... [more]
UPI002025A47D1.620e-7037.08hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
A0A6A3V8M8_9STRA1.860e-7037.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JH99_VITVI2.060e-7038.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0QQ26_9STRA3.440e-7037.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3JDE6_9STRA6.850e-7037.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA2.320e-6936.18Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62400contigH-elongata_contig62400:113..1279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1167
Cds size666
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.0990205-CDS-H-elongata_contig62400:112..7781622931006.0990205-CDS-H-elongata_contig62400:112..778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62400 113..778 -
1691679659.375387-CDS-H-elongata_contig62400:112..7781691679659.375387-CDS-H-elongata_contig62400:112..778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62400 113..778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.1200583-UTR-H-elongata_contig62400:778..12791622931006.1200583-UTR-H-elongata_contig62400:778..1279Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62400 779..1279 -
1691679659.3867576-UTR-H-elongata_contig62400:778..12791691679659.3867576-UTR-H-elongata_contig62400:778..1279Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62400 779..1279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62400.13811.1prot_H-elongata_contig62400.13811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62400 113..778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62400.13811.1

>prot_H-elongata_contig62400.13811.1 ID=prot_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAA
ELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKK
GSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPD
IASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCME
AYTDSDFGVCLDTRRSVSGAVL
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mRNA from alignment at H-elongata_contig62400:113..1279-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62400.13811.1 ID=mRNA_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-elongata_contig62400:113..1279- (Himanthalia elongata Himel1 dioecious)
CAGGAACCAAGGAATCGGCGACAGGCGATGGAATCGCCGGAATGGAACGA TTGGCGGAAAGCAGAGGAAATAGAGATGCGTGGCATGGTCGATAACTGCG TTTATAAGCAGGTGGCTCGGCCGAAGAATAAACTTGTGGTTGGCACGAAA ATTCTCTACAAACGAAAAGTCGGACAGGACGGCAAGGTCGAGAAATACAA GTGCCGGCTTGTAGCTCAAGGGTTCTGGCAGTTAGAGGGTGTTCACTATA CGGAGAAATACTCACCCACGTCATCGACCGCATCAATCCGGATGCTTTTG GCCACAGCATCGGCCAAGGACGGTGAGCTACGCCATTTCGACGCGAAGCA GGCATTCCTGGCAGTGGACATCGATGAGTAATTGTACATTGAGATCCCCG AAGAGTACCGGAAGTTTCCGGGAGCAGTGGGACGACTGGACAAGGCCATT TACGGACTCGTACAGGCGGGGAGGTGCTGGAAAAACAAGTTTTGCAGCGA TATGGCAGCGATTGGATTCGAGCAGGGAAAGGCGAATCCGTGCGTGTTCT GTAAGGTCGCTGACGGCGAGGCAGAAGTGGTGGTGGTCGTGCACGTGGAC GATATTCTTGCTCATGCCAAGGACAAAGCGACTATGGATAGATTCGCGGC TGAGCTTGGACAAAAGTTCAAATTGAAGAACATGGGTAACGCCAGGTACT ACATGGGTTGTCACATTACTAGGAACCGCAAGGCGCGCGAGCTGAAGATC GACCAACCCTTGTACGTAGAGTCAATGGTGGAAAAGTTCAACGTCAAGAA GGGAAGCAAGATACCGGCTACGTCGGGGGTGCCAACACTCTCAAAGGCGG ACGAGCCGCGGAACCCGAAGGAGAAGGAGGAAATGAAAACGTTTCCATAC AGGGAAGCAGTTGGGGCGCTTATGTGGACGGCGACGATGACACGGCCGGA TATTGCGAGCGCAGTACGCGCTGTGGACAGATTCTTCGAAAACTCTGGGC CGGCGCATAAAAAGGCAGTGATGAAAATTATGCAGTATCTCCTTCACACG AAGGATTGGGGGATTACATATGGTGGACAGGGCTGTGGACTCTGCATGGA GGCATACACGGACTCGGACTTTGGAGTCTGTCTGGATACGAGACGATCAG TGTCAGGTGCGGTACTC
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Coding sequence (CDS) from alignment at H-elongata_contig62400:113..1279-

>mRNA_H-elongata_contig62400.13811.1 ID=mRNA_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig62400:113..1279- (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGATTGGATTCGAGCAGGGAAAGGCGAATCCGTGCGTGTTCTG
TAAGGTCGCTGACGGCGAGGCAGAAGTGGTGGTGGTCGTGCACGTGGACG
ATATTCTTGCTCATGCCAAGGACAAAGCGACTATGGATAGATTCGCGGCT
GAGCTTGGACAAAAGTTCAAATTGAAGAACATGGGTAACGCCAGGTACTA
CATGGGTTGTCACATTACTAGGAACCGCAAGGCGCGCGAGCTGAAGATCG
ACCAACCCTTGTACGTAGAGTCAATGGTGGAAAAGTTCAACGTCAAGAAG
GGAAGCAAGATACCGGCTACGTCGGGGGTGCCAACACTCTCAAAGGCGGA
CGAGCCGCGGAACCCGAAGGAGAAGGAGGAAATGAAAACGTTTCCATACA
GGGAAGCAGTTGGGGCGCTTATGTGGACGGCGACGATGACACGGCCGGAT
ATTGCGAGCGCAGTACGCGCTGTGGACAGATTCTTCGAAAACTCTGGGCC
GGCGCATAAAAAGGCAGTGATGAAAATTATGCAGTATCTCCTTCACACGA
AGGATTGGGGGATTACATATGGTGGACAGGGCTGTGGACTCTGCATGGAG
GCATACACGGACTCGGACTTTGGAGTCTGTCTGGATACGAGACGATCAGT
GTCAGGTGCGGTACTCATGGCAGCGATTGGATTCGAGCAGGGAAAGGCGA
ATCCGTGCGTGTTCTGTAAGGTCGCTGACGGCGAGGCAGAAGTGGTGGTG
GTCGTGCACGTGGACGATATTCTTGCTCATGCCAAGGACAAAGCGACTAT
GGATAGATTCGCGGCTGAGCTTGGACAAAAGTTCAAATTGAAGAACATGG
GTAACGCCAGGTACTACATGGGTTGTCACATTACTAGGAACCGCAAGGCG
CGCGAGCTGAAGATCGACCAACCCTTGTACGTAGAGTCAATGGTGGAAAA
GTTCAACGTCAAGAAGGGAAGCAAGATACCGGCTACGTCGGGGGTGCCAA
CACTCTCAAAGGCGGACGAGCCGCGGAACCCGAAGGAGAAGGAGGAAATG
AAAACGTTTCCATACAGGGAAGCAGTTGGGGCGCTTATGTGGACGGCGAC
GATGACACGGCCGGATATTGCGAGCGCAGTACGCGCTGTGGACAGATTCT
TCGAAAACTCTGGGCCGGCGCATAAAAAGGCAGTGATGAAAATTATGCAG
TATCTCCTTCACACGAAGGATTGGGGGATTACATATGGTGGACAGGGCTG
TGGACTCTGCATGGAGGCATACACGGACTCGGACTTTGGAGTCTGTCTGG
ATACGAGACGATCAGTGTCAGGTGCGGTACTC
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