mRNA_H-elongata_contig62400.13811.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 249 bits (636), Expect = 1.680e-74 Identity = 146/391 (37.34%), Postives = 229/391 (58.57%), Query Frame = 1
Query: 4 EPRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKFP--GAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAV 1164
+P++ +AM+S + + W +A E EM M N V+ V K +G K +YK+K+G DGKVE YK RLVA+G+ Q EG+ Y E +SP + SIR+LLA A+ D E+ D K AFL ++ E +Y+ PE + V +L ++IYGL QA R W +F + + F + + PCV+ K++ G + + +V++VDDIL D +M L ++F +K++G A Y +G I R+R R L + Q +Y++++++++N++K + +P GV +LS+ + P+ +E+E M PY AVGA+M+T T TRPD+A A+ R+ N G H K V I++YL TKD + YG L ++ YTD+ F D +S+SG V
Sbjct: 92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKIS-GSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYV 478
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 251 bits (640), Expect = 3.240e-74 Identity = 148/398 (37.19%), Postives = 232/398 (58.29%), Query Frame = 1
Query: 7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
P+ +A + ++W+KA E++ ++ N +K V +P ++ +G + ++ K + G+V +YK RLVA+G+ Q G+ Y E YSP + S+R +LA A+ E+ D AFL +++E +Y+E+PE R+ V L +++YGL QA R W + + GFE A+PCV+ + +GE E +V ++VDD+L ++ KA + A + +KF++K++G AR+ +G I + + R L I Q Y ES+++KF + K P GV L+KADEP+ ++K +MK+ PYR VG+LM+ A TRPDI+ AV + RF EN G H A +K+++YLL TKD GI Y G G EAY+D+D+ D RRSVSG +L
Sbjct: 66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTR-GEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLL 460
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 247 bits (631), Expect = 2.680e-72 Identity = 148/398 (37.19%), Postives = 232/398 (58.29%), Query Frame = 1
Query: 7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
P+ +A + ++W+KA E++ ++ N +K V +P ++ +G + ++ K + G+V +YK RLVA+G+ Q G+ Y E YSP + SIR +LA SA+ E+ D AFL ++E +Y+E+ E R+ V L +++YGL QA R W + ++GFE +PCV+ + +GE E +V ++VDD+L ++ KA + A + +KF++K+MG AR+ +G I + + R L I Q Y ES+++KF + K P GV L+KADEP+ ++K +MK+ PYR VG+LM+ + TRPDI+ AV + RF EN G H A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +L
Sbjct: 131 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLL 525
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 249 bits (635), Expect = 4.520e-71 Identity = 149/398 (37.44%), Postives = 231/398 (58.04%), Query Frame = 1
Query: 7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
P+ +A + ++W+KA E+ ++ N +K V +P ++ +G + ++ K + G+V +YK RLVA+G+ Q G+ Y E YSP + SIR +L SA+ E+ D AFL ++ +Y+E+PEE R+ V L +++YGL QA R W ++ ++GFE A+PCV+ + +GE E +V ++VDD+L ++ A + A + +KF++K+MG AR+ +G I + + R L I Q Y ES+++KF + K P GV L+KADEP+ ++K +MK PYR VG+LM+ A TRPDI+ AV + RF EN G H A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +L
Sbjct: 397 PKTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLL 791
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D) HSP 1 Score: 239 bits (611), Expect = 1.620e-70 Identity = 145/391 (37.08%), Postives = 216/391 (55.24%), Query Frame = 1
Query: 4 EPRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEY--RKFPGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAV 1164
EP N +AM P+ N W +A + E+ M +N V+ P ++ + K ++K+K DG V YK RLVA+G+ Q++GV Y E +SP + S+R++LA A+ D E+ D K AFL + E LY+ PE + K V +L ++IYGLVQA R W +F + A GF Q CV+ KV+ G + ++++VDDIL D +D A L + F +K++G A Y +G I R+R R + + Q Y++ +++KF + + K +P GV LS A P K+KEEM PY A+G++M+ TRPD+ AV V R+ N G H AV I++YL TKD + YGG L ++ Y D+ F LD +S +G V
Sbjct: 15 EPSNYEEAMAGPDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKVS-GSSVAFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGFLPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRPDVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRTKDMFLVYGGDE-ELVVKGYVDASFDTDLDDSKSQTGYV 402
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3V8M8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V8M8_9STRA) HSP 1 Score: 238 bits (606), Expect = 1.860e-70 Identity = 144/386 (37.31%), Postives = 223/386 (57.77%), Query Frame = 1
Query: 46 NDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKF---NVKKGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
++W+KA E+ ++ N + V +P ++ +G + ++ K + G+V +YK RLVA+G+ Q G+ Y E YSP + SI +LA SA+ E+ D AFL ++E +Y+E+PE R+ V L +++YGL QA R W + ++GFE A+PCV+ + +GE E +V ++VDD+L ++ K + A + +KF++K++G +R+ +G I + + R L I Q Y ES+++KF NVK P GV L+KADEP+ ++K +MK+ PYR VG+LM+ A TRPDI+ AV + RF EN G A +K+++YLL TKD GI Y G +EAY+D D+ D RRSVSG +L
Sbjct: 21 DEWKKAIASELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKP-CLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLL 402
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI) HSP 1 Score: 249 bits (637), Expect = 2.060e-70 Identity = 149/391 (38.11%), Postives = 225/391 (57.54%), Query Frame = 1
Query: 4 EPRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKFP--GAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAV 1164
+P+N +AM+ + N W++A E E+ M N V+ V K+ +G K +YK+K+G DGKVE YK RLVA+G+ Q EG+ Y E +SP + SIR+LLA A+ D E+ D K AFL ++ E +Y+ PE Y V +L ++IYGL QA R W F + F + + PCV+ K G + +V++VDDIL D M L ++F +K++G A Y +G I R+R R L + Q +Y++++++++N++ + +P +GV TLS+ D P+ P+E+E M PY AVGA+M+T T TRPD+A A+ R+ N G H K V I++YL TKD + YG L ++ YTD+ F D +S+SG V
Sbjct: 703 DPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVY-KRFSGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESE--LKLKGYTDASFASDKDDSKSISGYV 1089
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 246 bits (628), Expect = 3.440e-70 Identity = 148/398 (37.19%), Postives = 232/398 (58.29%), Query Frame = 1
Query: 7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
P+ +A + ++W+KA E++ ++ N +K V +P ++ +G + ++ K + G+V +YK RLVA+G+ Q G++Y E YSP + SIR +LA SA+ E+ D AFL ++E +Y+E+ E R+ V L +++YGL QA R W + ++GFE +PCV+ + +GE E +V ++VDD+L ++ KA + A + +KF++K+MG AR+ +G I N + R L I Q Y ES+++K + K P GV L+KADEP+ ++K +MK+ PYR VG+LM+ + TRPDI+ AV + RF EN G H A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +L
Sbjct: 375 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 769
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3JDE6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JDE6_9STRA) HSP 1 Score: 245 bits (626), Expect = 6.850e-70 Identity = 148/398 (37.19%), Postives = 234/398 (58.79%), Query Frame = 1
Query: 7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---PGAVGRLD------KAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSKIPATSGVPT--LSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
P+ +A + ++W+KA E++ ++ N +K V +P ++ +G + ++ K + G+V +YK RLVA+G+ Q G Y E YSP + SIR +LA SA+ E+ D AFL ++E +Y+E+PE R+ A G D +++YGL QA R W + ++GFE ANPCV+ + +G+ E +V ++VDD+L ++ KA + A + + F++K++G AR+ +G I + + R L I Q Y ES+++KF ++ +K T P+ L+KADEP+ ++K +MK+ PYR VG+LM+ A TRPDI+ AV + RF EN G H A +K+++YLL TKD I Y G G +EAY+D+D+ D RRSVSG +L
Sbjct: 378 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGTDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVDCMLLQSLYGLKQASRVWNETIDKHLNSMGFEPADANPCVYTR-GEGDDECIVCLYVDDMLIASRQKAVIASVKAGIAENFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPCLTPLEPSVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 772
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 239 bits (609), Expect = 2.320e-69 Identity = 144/398 (36.18%), Postives = 227/398 (57.04%), Query Frame = 1
Query: 7 PRNRRQAMESPEWNDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKILYKRKVGQDGKVEKYKCRLVAQGFWQLEGVHYTEKYSPTSSTASIRMLLATASAKDGELRHFDAKQAFLAVDIDE*LYIEIPEEYRKF---------PGAVGRLDKAIYGLVQAGRCWKNKFCSDMAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 1167
P+ +A + ++W KA E+ +V N +K V +P ++ +G + ++ K + + +YK RLVA+G+ Q + Y E YSP + SIR +L SA+ E+ D AFL ++E +Y+E+PE R+ V L +++YGL A R W + + ++GFE A+PCV+ + +GE E +V ++VD++L ++ KA + A + +KF++K++G AR+ +G I N + R L I Q Y ES+++ F + K P GV L+KADEP+ ++K +MK+ PYR VG+LM+ A TRPD++ AV + RF EN G H + +K ++YLL TKD GI Y GQ G +EAY+D+D+ D RRSVSG +L
Sbjct: 99 PKTYAEATTRQDQDEWMKAIASELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTR-GEGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLL 493 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62400.13811.1 >prot_H-elongata_contig62400.13811.1 ID=prot_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAback to top mRNA from alignment at H-elongata_contig62400:113..1279- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62400.13811.1 ID=mRNA_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-elongata_contig62400:113..1279- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62400:113..1279- >mRNA_H-elongata_contig62400.13811.1 ID=mRNA_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig62400:113..1279- (Himanthalia elongata Himel1 dioecious)back to top |