mRNA_H-elongata_contig6227.13796.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: D8LKH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH7_ECTSI) HSP 1 Score: 182 bits (461), Expect = 1.960e-52 Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3
Query: 30 DGGFNMGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQK 374
DGGFNMGNMMEGLKKANEIGQKTKDLQKDLELL+V+G SPCGMV VT+TGQQMP+SC+ISEEAM AK + EKV+AA AAH ESL MSKRLA+LYSEMGLPVGAGGG+PG K
Sbjct: 69 DGGFNMGNMMEGLKKANEIGQKTKDLQKDLELLKVEGKSPCGMVTVTVTGQQMPLSCDISEEAMAEGAKAVAEKVAAAQQAAHTESLQTMSKRLAELYSEMGLPVGAGGGMPGAK 183
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A835YMC5_9STRA (Nucleoid-associated protein YbaB family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC5_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.030e-26 Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 3
Query: 36 GFNMGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQK 374
G NMG+MME LKKANEIG+K+K++Q +LE +R++G S G KVT+TGQQ+PV CEI E ++ + + V AMT AH+ESL VM K++A+LY MGLPVG PGQ+
Sbjct: 62 GLNMGSMMESLKKANEIGRKSKEMQDELEKMRLEGKSSNGKAKVTMTGQQIPVGCEIDESLLSEGKEAVQTAVLEAMTEAHKESLMVMGKKMAELYQGMGLPVGN----PGQQ 170
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7Y5I586_9CYAN (Nucleoid-associated protein HCU40_06550 n=1 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5I586_9CYAN) HSP 1 Score: 79.7 bits (195), Expect = 1.250e-14 Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 3
Query: 21 EKKDGGFNMGNMME---GLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVG 347
E K GF +G M E +KA +I + K LQ++L+ LR+ G+SP G+VK+TL+G Q P EIS EA+ DA+ L + V AA+ A+Q S + M +++ DL +GLP G
Sbjct: 3 EGKGFGFGLGKMKELQNAFQKAQQIQEGAKKLQEELDELRLTGTSPNGLVKITLSGNQEPQDVEISPEALKEDAEILSDLVLAALKDAYQLSTSTMKQKMEDLTGGLGLPAG 114
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S2WN77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN77_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 9.010e-14 Identity = 47/122 (38.52%), Postives = 79/122 (64.75%), Query Frame = 3
Query: 12 GGGEKKDGGFN--MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLP-VGAGGGLPG 368
GGG+K+DG MG+MME KK EIG+KTK+LQK+L ++++ S V VT++GQQ +S IS++AM + + +++ ++ AH +S VM+ +L ++ ++ +P +G GG+PG
Sbjct: 47 GGGKKEDGAKKPGMGDMMEQFKKVQEIGRKTKELQKELAEMQIEEKSEDESVSVTISGQQAMLSAYISKDAMDAGKEEVEKRLMESLQKAHLKSFEVMNTKLMEITKDLDIPGLGGPGGMPG 168
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S3MQT1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MQT1_9SPIT) HSP 1 Score: 77.4 bits (189), Expect = 3.710e-13 Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 3
Query: 45 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPG 368
MGNMME +KKA E+G K K LQ++L V+ +S G V V ++G Q+P+ ++++E + AK + ++ AM AH+ S+ +L +LY+E+GLP+ GG G
Sbjct: 65 MGNMMETIKKAQEMGVKVKALQEELVNTEVEATSADGGVTVVISGAQVPMDVKVTDEMCSKGAKAVSAAITDAMREAHKNSMEYSKSKLTELYAEIGLPMPPEGGAGG 172
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A2N5JN90_9CYAN (Nucleoid-associated protein CV045_10450 n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JN90_9CYAN) HSP 1 Score: 75.1 bits (183), Expect = 4.970e-13 Identity = 40/103 (38.83%), Postives = 67/103 (65.05%), Query Frame = 3
Query: 33 GGFNMGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLP 341
GGF +G + E +KAN++ +++++LQ +LE +R+DG + G+VKVT++G Q P + I+ EA+ + L + V AM A+Q S M R+ +L +E+GLP
Sbjct: 5 GGFGLGKIKEAFQKANQLKERSQELQSELEEMRLDGEAGGGLVKVTVSGNQEPQAIVIAPEAIEQGKEVLEDLVLTAMRNAYQLSAQTMKNRMEELTNELGLP 107
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: R1FFN9_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FFN9_EMIHU) HSP 1 Score: 76.6 bits (187), Expect = 5.200e-13 Identity = 40/105 (38.10%), Postives = 67/105 (63.81%), Query Frame = 3
Query: 45 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGG 359
MGNMME +KKA E+G K K LQ++L ++ ++ G V V ++G Q+P+ ++SE+ + A+ + + +S AM AH+ S+ ++L LY+E+GLP+ GG
Sbjct: 56 MGNMMETIKKAQEVGVKVKALQEELVNTEIEATAADGGVTVVISGAQVPMDVKVSEDLCSKGAEAVSDAISLAMREAHKNSMEYSKQKLGALYAEIGLPMPPEGG 160
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S4B6N1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B6N1_CHRCT) HSP 1 Score: 75.9 bits (185), Expect = 1.480e-12 Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 3
Query: 66 LKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQ 371
+KK +E+GQK ++LQ++L V+ S+ G + V +TG Q+P+S E+S+E + G A+ L E+V+AA+ AH +S +R+A+LY +MGL G G+P Q
Sbjct: 85 MKKYSEVGQKVQELQEELTQTEVECSTNEGGIVVKVTGTQVPLSVEVSDEMLAGGAEKLSEQVAAALKQAHAKSGGYAQQRMAELYDQMGL----GAGMPKQ 182
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S3ESI0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ESI0_9EUKA) HSP 1 Score: 72.0 bits (175), Expect = 2.500e-11 Identity = 41/111 (36.94%), Postives = 68/111 (61.26%), Query Frame = 3
Query: 15 GGEKKDGGFNMG-NMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPV 344
GG KD G G NMME +KKA ++G K K+LQ++L ++ ++ G V V+++G +P+S +S E + A+ + V+ A AH+ S+A R+ +LY+E+GLP+
Sbjct: 51 GGGGKDEGMGGGLNMMETIKKAQQVGVKVKELQEELANTEIEATAAEGGVSVSVSGANVPISVTVSPELVAQGAEAVSTAVTLATKEAHRNSMAYAKDRMTELYTEIGLPM 161
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A0M0JAF8_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAF8_9EUKA) HSP 1 Score: 72.4 bits (176), Expect = 2.820e-11 Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 51 NMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPV 344
NMME +KKA ++G K K LQ++L ++ S G V ++G Q+P+S E++E + +K + E VS A AH S++ +++A LY+E+GLP+
Sbjct: 88 NMMETIKKAQQVGVKVKALQEELAQTEIEAISADGGCTVVISGAQVPISVEVTEALLAKGSKAVSEAVSVAAKEAHTNSVSYAQEQMATLYAEIGLPI 185 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6227.13796.1 >prot_H-elongata_contig6227.13796.1 ID=prot_H-elongata_contig6227.13796.1|Name=mRNA_H-elongata_contig6227.13796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVback to top mRNA from alignment at H-elongata_contig6227:2914..5102+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6227.13796.1 ID=mRNA_H-elongata_contig6227.13796.1|Name=mRNA_H-elongata_contig6227.13796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2189bp|location=Sequence derived from alignment at H-elongata_contig6227:2914..5102+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6227:2914..5102+ >mRNA_H-elongata_contig6227.13796.1 ID=mRNA_H-elongata_contig6227.13796.1|Name=mRNA_H-elongata_contig6227.13796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig6227:2914..5102+ (Himanthalia elongata Himel1 dioecious)back to top |