prot_H-elongata_contig6227.13796.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6227.13796.1
Unique Nameprot_H-elongata_contig6227.13796.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length111
Homology
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: D8LKH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 9.820e-53
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQK 110
            MGNMMEGLKKANEIGQKTKDLQKDLELL+V+G SPCGMV VT+TGQQMP+SC+ISEEAM   AK + EKV+AA  AAH ESL  MSKRLA+LYSEMGLPVGAGGG+PG K
Sbjct:   74 MGNMMEGLKKANEIGQKTKDLQKDLELLKVEGKSPCGMVTVTVTGQQMPLSCDISEEAMAEGAKAVAEKVAAAQQAAHTESLQTMSKRLAELYSEMGLPVGAGGGMPGAK 183          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A835YMC5_9STRA (Nucleoid-associated protein YbaB family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.230e-28
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQK 110
            MG+MME LKKANEIG+K+K++Q +LE +R++G S  G  KVT+TGQQ+PV CEI E  ++   + +   V  AMT AH+ESL VM K++A+LY  MGLPVG     PGQ+
Sbjct:   65 MGSMMESLKKANEIGRKSKEMQDELEKMRLEGKSSNGKAKVTMTGQQIPVGCEIDESLLSEGKEAVQTAVLEAMTEAHKESLMVMGKKMAELYQGMGLPVGN----PGQQ 170          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7Y5I586_9CYAN (Nucleoid-associated protein HCU40_06550 n=1 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5I586_9CYAN)

HSP 1 Score: 75.9 bits (185), Expect = 1.590e-15
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVG 101
            M  +    +KA +I +  K LQ++L+ LR+ G+SP G+VK+TL+G Q P   EIS EA+  DA+ L + V AA+  A+Q S + M +++ DL   +GLP G
Sbjct:   14 MKELQNAFQKAQQIQEGAKKLQEELDELRLTGTSPNGLVKITLSGNQEPQDVEISPEALKEDAEILSDLVLAALKDAYQLSTSTMKQKMEDLTGGLGLPAG 114          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S3MQT1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MQT1_9SPIT)

HSP 1 Score: 77.4 bits (189), Expect = 1.680e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPG 108
            MGNMME +KKA E+G K K LQ++L    V+ +S  G V V ++G Q+P+  ++++E  +  AK +   ++ AM  AH+ S+     +L +LY+E+GLP+   GG  G
Sbjct:   65 MGNMMETIKKAQEMGVKVKALQEELVNTEVEATSADGGVTVVISGAQVPMDVKVTDEMCSKGAKAVSAAITDAMREAHKNSMEYSKSKLTELYAEIGLPMPPEGGAGG 172          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: R1FFN9_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FFN9_EMIHU)

HSP 1 Score: 77.0 bits (188), Expect = 1.780e-15
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQ 109
            MGNMME +KKA E+G K K LQ++L    ++ ++  G V V ++G Q+P+  ++SE+  +  A+ + + +S AM  AH+ S+    ++L  LY+E+GLP+   GG PG 
Sbjct:   56 MGNMMETIKKAQEVGVKVKALQEELVNTEIEATAADGGVTVVISGAQVPMDVKVSEDLCSKGAEAVSDAISLAMREAHKNSMEYSKQKLGALYAEIGLPMPPEGG-PGM 163          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S4B6N1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B6N1_CHRCT)

HSP 1 Score: 76.3 bits (186), Expect = 5.320e-15
Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    6 EGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPVGAGGGLPGQ 109
            E +KK +E+GQK ++LQ++L    V+ S+  G + V +TG Q+P+S E+S+E + G A+ L E+V+AA+  AH +S     +R+A+LY +MGL    G G+P Q
Sbjct:   83 EMMKKYSEVGQKVQELQEELTQTEVECSTNEGGIVVKVTGTQVPLSVEVSDEMLAGGAEKLSEQVAAALKQAHAKSGGYAQQRMAELYDQMGL----GAGMPKQ 182          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A7S2WN77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN77_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.130e-14
Identity = 41/110 (37.27%), Postives = 71/110 (64.55%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLP-VGAGGGLPGQ 109
            MG+MME  KK  EIG+KTK+LQK+L  ++++  S    V VT++GQQ  +S  IS++AM    + + +++  ++  AH +S  VM+ +L ++  ++ +P +G  GG+PG 
Sbjct:   60 MGDMMEQFKKVQEIGRKTKELQKELAEMQIEEKSEDESVSVTISGQQAMLSAYISKDAMDAGKEEVEKRLMESLQKAHLKSFEVMNTKLMEITKDLDIPGLGGPGGMPGM 169          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A0M0JAF8_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAF8_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.850e-13
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 0
Query:    3 NMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPV 100
            NMME +KKA ++G K K LQ++L    ++  S  G   V ++G Q+P+S E++E  +   +K + E VS A   AH  S++   +++A LY+E+GLP+
Sbjct:   88 NMMETIKKAQQVGVKVKALQEELAQTEIEAISADGGCTVVISGAQVPISVEVTEALLAKGSKAVSEAVSVAAKEAHTNSVSYAQEQMATLYAEIGLPI 185          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A1Z4RS41_9CHRO (Nucleoid-associated protein NIES4102_22820 n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A1Z4RS41_9CHRO)

HSP 1 Score: 69.7 bits (169), Expect = 3.710e-13
Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLP 99
            M  + +  KKA E+    + LQ +LE L ++G+SP G+VKV ++G Q P   EIS +A++  A+ L   V+AAM +A+++S  +M  R+ +L S + LP
Sbjct:   11 MKELADAFKKAQEVQAGAQQLQNELEQLEIEGTSPDGLVKVVMSGNQEPRRVEISPDAVSQGAEALSASVTAAMKSAYEKSTELMRGRMEELTSGLNLP 109          
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Match: A0A2N5JN90_9CYAN (Nucleoid-associated protein CV045_10450 n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JN90_9CYAN)

HSP 1 Score: 69.3 bits (168), Expect = 5.110e-13
Identity = 37/99 (37.37%), Postives = 64/99 (64.65%), Query Frame = 0
Query:    1 MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPVSCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLP 99
            +G + E  +KAN++ +++++LQ +LE +R+DG +  G+VKVT++G Q P +  I+ EA+    + L + V  AM  A+Q S   M  R+ +L +E+GLP
Sbjct:    9 LGKIKEAFQKANQLKERSQELQSELEEMRLDGEAGGGLVKVTVSGNQEPQAIVIAPEAIEQGKEVLEDLVLTAMRNAYQLSAQTMKNRMEELTNELGLP 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6227.13796.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH7_ECTSI9.820e-5380.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMC5_9STRA1.230e-2853.64Nucleoid-associated protein YbaB family n=1 Tax=Tr... [more]
A0A7Y5I586_9CYAN1.590e-1541.58Nucleoid-associated protein HCU40_06550 n=1 Tax=Ps... [more]
A0A7S3MQT1_9SPIT1.680e-1538.89Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
R1FFN9_EMIHU1.780e-1538.53Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S4B6N1_CHRCT5.320e-1541.35Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2WN77_9STRA1.130e-1437.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0M0JAF8_9EUKA1.850e-1337.76Uncharacterized protein (Fragment) n=1 Tax=Chrysoc... [more]
A0A1Z4RS41_9CHRO3.710e-1338.38Nucleoid-associated protein NIES4102_22820 n=5 Tax... [more]
A0A2N5JN90_9CYAN5.110e-1337.37Nucleoid-associated protein CV045_10450 n=1 Tax=Cy... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004401Nucleoid-associated protein YbaB/EbfC familyPFAMPF02575YbaB_DNA_bdcoord: 9..96
e-value: 6.7E-16
score: 58.3
IPR004401Nucleoid-associated protein YbaB/EbfC familyPIRSFPIRSF004555UCP004555coord: 1..109
e-value: 4.5E-17
score: 59.8
IPR004401Nucleoid-associated protein YbaB/EbfC familyPANTHERPTHR33449FAMILY NOT NAMEDcoord: 1..105
IPR036894Nucleoid-associated protein YbaB-like domain superfamilyGENE3D3.30.1310.10coord: 1..103
e-value: 1.7E-19
score: 71.6
IPR036894Nucleoid-associated protein YbaB-like domain superfamilySUPERFAMILY82607YbaB-likecoord: 8..99
NoneNo IPR availablePANTHERPTHR33449:SF1NUCLEOID-ASSOCIATED PROTEIN YBABcoord: 1..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6227contigH-elongata_contig6227:2958..4297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6227.13796.1mRNA_H-elongata_contig6227.13796.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6227 2914..5102 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6227.13796.1 ID=prot_H-elongata_contig6227.13796.1|Name=mRNA_H-elongata_contig6227.13796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MGNMMEGLKKANEIGQKTKDLQKDLELLRVDGSSPCGMVKVTLTGQQMPV
SCEISEEAMTGDAKTLGEKVSAAMTAAHQESLAVMSKRLADLYSEMGLPV
GAGGGLPGQK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004401YbaB/EbfC
IPR036894YbaB-like_sf