mRNA_H-elongata_contig62181.13787.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62181.13787.1
Unique NamemRNA_H-elongata_contig62181.13787.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 245 bits (625), Expect = 4.240e-67
Identity = 143/386 (37.05%), Postives = 217/386 (56.22%), Query Frame = 1
Query:   28 EAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSWT-STSYLEADVEEEIYVELP--EAYRDSRKQVGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTNIVPSAAGG-KVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITYGGEPGGGPSYQR--GSTQTTAPARTRVVQCLEG 1167
            EA+   +WP+W+  I  E+D   A G W +V RP    V+ ++ V + K +  G I+KYK RLVA+GF QV GV Y ++ +P +  +SIR++L++    GW   S+  +++YL + ++E++Y+E P   A+ D +  V  L KA+YGL   G  W +     L   GF R  AD  V  +   G  ++V+ V++DD L+  +++R  +    ++ + + I DLG  S+ LG  I+ D  AGTL   QH YI+ +  RF  T    V       ++LSK+  P++ AEV  MR++ YRE +GALM+AA  TRPDI+FA   LA+F  NPG  HW A ++  +YL  TR L + YGG+      Y    G+TQ    A T  V  ++G
Sbjct:  803 EAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYK-HEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQQRELEGYVNADGATQEHRRAITGYVFLVDG 1187          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 242 bits (618), Expect = 4.240e-66
Identity = 145/392 (36.99%), Postives = 220/392 (56.12%), Query Frame = 1
Query:   19 TMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSWT-STSYLEA--DVEEEIYVELPE--AYRDSRKQVGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KTNIVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITYGGEPGGGPSY--QRGSTQTTAPARTRVVQCLEG 1167
            T+ EA+   +WP+W   I  E++     G W +V+RP    V+G++ V + K D  G I+KYK RLVAQGF Q+ G+ Y E+ +P +  +SIR++L++    GW+  S+  +++YL +  D +E IY+E P   A +D +  V  LRKA+YGL   G  W +   I L   GF R+ +D  V   I     + V+ +++DD  +  ++     +  R +   +P+ DLG  S+ LG  + RDR A TL   QH YI ++  RF  T  K + +P     + L+KS  P + A++  MR+I YRE +G+LM+AA  TRPDISFA   LA+F+ NPG  HW A ++  +YL  T+NL + YGG   G   Y    G++Q    A T  V  ++G
Sbjct:  965 TLEEARKRPDWPKWLAAIRAELESLKLNGTWELVDRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAI-DANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGLEGYVDADGASQEHRHAITGYVFLVDG 1354          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 240 bits (613), Expect = 1.940e-65
Identity = 150/392 (38.27%), Postives = 221/392 (56.38%), Query Frame = 1
Query:   19 TMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSWT-STSYLEA--DVEEEIYVELPEAY--RDSRKQVGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KTNIVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITYGGEPGGGPSY--QRGSTQTTAPARTRVVQCLEG 1167
            T+ EA+   +W +W   I  E++       W VVERP G  V+G++ V + K D  G I+KYK RLVAQGF QV GV Y E+ +P +  ASIR+VL++    GWE  S+  +++YL +  D +EEIY+E P  +  +D +  V  L+KA+YGL   G  W +   I L   GF+R+ AD  V    + G  +V++ +++DD ++   +     Q  R+L   + + DLG  S+ LG  +TRD  A TL   QH YI ++  RF  T  K + +P     + L KS  P +  ++  MR+I YRE +G+LM+AA  TRPDISFA   LA+F+ NPG IHW A ++  +YL  T+ L + YGG   G   Y    G++Q    A +  V  ++G
Sbjct:  965 TLEEARKRPDWAKWLAAIKAELESLIRNDTWTVVERPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWEVQSFDFNSAYLNSVLDDDEEIYLEQPPQFSLKDPKLHVLRLKKALYGLKQGGRKWYEHLCIALADLGFKRAEADYGVFYAKV-GESLVLLAIHVDDCIITGNSSTLISQYKRQLGDKYSLTDLGPVSWLLGIKVTRDLEARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNIQFL-KSQCPTSLIDIARMRKIPYREAIGSLMYAAVGTRPDISFAVSTLAQFSHNPGWIHWEAVKRVFRYLLGTKMLVLQYGGVQQGLQGYVDADGASQEHRHAISGYVFLVDG 1354          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 235 bits (600), Expect = 2.580e-65
Identity = 130/362 (35.91%), Postives = 207/362 (57.18%), Query Frame = 1
Query:    4 DPEPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSW-TSTSYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTK--TNIVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITY 1074
            D +PT+  +A  S++   W + +  E+D     GVW +V+  +    +G + VFK K D  G IE++K RLVA+GF Q +G+++ E+ SP S   S R++++++     E       T++L  ++EEEI++  PE + ++ K+  V  L+K++YGL  A   W K F   + + GF  +  D CV  +++ G   + +++Y+DD+L+AS+  +  +     L S F +K+LG ASY LG  I RDR  G L   Q  YI  + +RFG+       VP + G K L+K+  P+T+ E  EM  I Y  +VG+LM+A   TRPD+SFA   L++F  NPG  HW A +K L+YL  T++  + Y
Sbjct:  245 DNDPTSFKQATGSNDSDAWTQAMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVY 604          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 226 bits (575), Expect = 7.860e-65
Identity = 122/359 (33.98%), Postives = 202/359 (56.27%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSW-TSTSYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTN-IVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITY 1074
            +P++  EA  S +  +W   +  E++      VW +VE   G   +G + V+K K+D +G +E++K RLVA+G+ Q +G+ Y+E+ SP S   S+R+V++++     E       T++L  ++ E++Y+  PE ++   K+  V  L+K+ YGL  A   W   F   ++  GF  +  D C   + + G+   ++V+Y+DD+L+AS +     ++ R L S F +KDLG ASY +G  I RDR +GTL   Q  YI  V  R+ +   + +V     G V      P+T+ E E+MR I Y  +VG++M+A   TRPDI++ A  L ++  NPG  HW+A +K L+YL  T++  +TY
Sbjct:   35 DPSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYLQGTKDYKLTY 392          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A1J3K4I8_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K4I8_NOCCA)

HSP 1 Score: 238 bits (608), Expect = 8.040e-65
Identity = 133/360 (36.94%), Postives = 198/360 (55.00%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSW-TSTSYLEADVEEEIYVELPEAY--RDSRKQVGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTK--TNIVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITY 1074
            +P +  +A       +W      EID     GVW +V  P+G   +G + +FK K+D +G +E+YK RLVA+GF Q +G+ Y E+ SP S   S+R++L+++     E       T++L  D+EEE+Y+  PE +        V  L+K++YGL  A   W   F   +   GF+ +  DPC+  +   G+  + +V+Y+DD+L+AS+      Q    L   F +KD+G ASY +G  I RDR+ G L   Q  YI  V ERF +    +++VP   G K L     PQ + E  EM++  Y  +VG+LM+A   TRPDIS A   L +F  NPG +HW+AA+K L+YL  TRN  +TY
Sbjct:  817 DPVSYSQAMKDVNCDKWIDASKDEIDSMVKNGVWDIVPLPEGHKAVGCKWIFKTKLDCNGNVERYKARLVAKGFNQKEGIDYCETFSPVSRKDSLRIILALVAQYDLELHQMDVKTAFLNGDLEEEVYMRQPEGFIIEGQEDMVCKLKKSIYGLKQASRQWYLKFDEIITNFGFKENIVDPCIYLK-FSGSKFIFLVLYVDDILLASSDLGLLHQTKNYLSKNFDMKDMGEASYVIGIEIFRDRSLGILGLSQKAYIDRVLERFSMLSCSSSVVPMQKGDK-LDLKQCPQNEMERNEMQKYPYASLVGSLMYAQVCTRPDISHAVGMLGRFQSNPGIVHWQAAKKVLRYLKGTRNHMLTY 1174          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 234 bits (597), Expect = 9.710e-65
Identity = 136/360 (37.78%), Postives = 205/360 (56.94%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSW-TSTSYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTK--TNIVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITY 1074
            +P++  +A  SS+  +W   +  E+       VW +V+ P G   +G + VFK K D  G+IE+YK RLVA+GF Q +GV Y+E+ SP S+  S R+V++++     E       T++L  D+ E++Y+  P+ ++ S K+  V  L+K++YGL  A   W   F   + + GF+ +  D C+  +I  G+ ++ +V+Y+DD+L+AS       +  R L   F +KDLG AS+ LG  I RDR+ G L   Q  YI  V ERF ++       P   G K LSK   PQ D E  EM++I Y   VG+LM+A   TRPDI+FA   L +F  +PG  HWRAA+K L+YL  T++  +TY
Sbjct:  277 DPSSYSQAIQSSQSTKWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 634          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 235 bits (599), Expect = 1.390e-64
Identity = 139/361 (38.50%), Postives = 201/361 (55.68%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSWTST-SYLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHAGLMW*KAFGIELEAK-GFQRS*ADPCV-LRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTNIVPSAAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITYGGE 1083
            EP T+ EAQA+ EWP+WKR +  EI      G +   + P G+  +G R V++ K D DGRI +YK RLVAQGF Q  G+ Y E+ +P     S+R++L++      E   +    +YL AD++EEIY+  P  Y +    +  LRKA+YGL  AG  W       L A  GFQR  +DPCV L++   G  +V +  ++DD+   + T    +     L   + I DLG     LG  I+RDR   TL   Q QYIQTV +RF +   N V +     V  K      DA++ EM+ + Y+ ++G+LM+AA  TRPDIS+A   L++++  PG  HW AA++ L+YL  T++ GI Y G+
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGM--HVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNV--KLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGK 370          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 227 bits (578), Expect = 3.350e-64
Identity = 124/364 (34.07%), Postives = 206/364 (56.59%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSW-TSTSYLEADVEEEIYVELPEAYR--DSRKQVGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTNIVPS---AAGGKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITY 1074
            L+ +P ++ + + SS   +W + +  E+      GVW +VE PKG   +G + +FK K D  G I +YK RLVA+GF Q +G+ Y+E+ SP S+  S R++++++     E       T++L  +++E IY+  PE +   DS++ V  L++++YGL  A   W + F   + + GF+ +  D C+  +   G+  +++V+Y+DD+L+AS+      + +R L S F +KDLG AS+ LG  I RDR+ G L   Q  YI  V  RFG++  N  P     A G   S    P+ + E ++M +  Y   VG+LM+A   TRPDI++    L ++  NPG  HW+ A++ ++YL  T++  +TY
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMS--NYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY 363          
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR)

HSP 1 Score: 228 bits (581), Expect = 4.040e-64
Identity = 125/361 (34.63%), Postives = 205/361 (56.79%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRVIAREIDGQTARGVW*VVERPKGKTVLGTRVVFKPKIDKDGRIEKYKCRLVAQGFRQVKGVHYEESSSPTSAHASIRMVLSMIEALGWEGGSW-TSTSYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHAGLMW*KAFGIELEAKGFQRS*ADPCVLRRILHGTVVVVIVVYLDDLLVASATKRDEEQAVRELCSCFPIKDLGVASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTNIVPSAAG---GKVLSKSDSPQTDAEVEEMRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKALQYLWHTRNLGITY 1074
            +PTT  +A    +  QW   +  E+       VW + E P G   +G + V+K K+D +G IE+YK RLVA+G+ Q +G+ Y+E+ SP S   S+R+V++++     E       T++L  D+ E+++++ PE +    K+  V  L K++YGL  A   W   F   ++   F ++  D C+  +I  G+  V++V+Y+DD+L+AS       ++ R L + F +KDLG ASY +G  I R+R+ GTL   Q  YI+ + +RF + + +  PS A    G        P+++AE+++MR I Y  +VG+LM+A   TRPDI++    L ++  NPG  HW+AA+K L+YL  T+   +TY
Sbjct:  109 DPTTFKDAMNCDQSTQWLDAMKDELKSMKTNNVWTLTELPTGAKPVGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNPGLDHWKAAKKVLRYLQGTKEYKLTY 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62181.13787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060SPD4_PYCCI4.240e-6737.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A2R6PCF8_9APHY4.240e-6636.99Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A4S4K4Q2_9APHY1.940e-6538.27Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
A0A2P6SMQ0_ROSCH2.580e-6535.91Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A5N6NCI1_9ASTR7.860e-6533.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3K4I8_NOCCA8.040e-6536.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GV19_FAGSY9.710e-6537.78Integrase catalytic domain-containing protein n=6 ... [more]
A0A1M2V3W8_TRAPU1.390e-6438.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HUL4_VITVI3.350e-6434.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6M1Y8_9ASTR4.040e-6434.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62181contigH-elongata_contig62181:369..1915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog474922.ELA37642
EggNOG free text desc.Reverse transcriptase domain protein
EggNOG OGs1F76R@1028384,21GDZ@147550,39W4B@33154,3P15U@4751,3QR1M@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelGlomerellales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1547
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62181.13787.1prot_H-elongata_contig62181.13787.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62181 743..1030 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.2830417-UTR-H-elongata_contig62181:368..7421622931003.2830417-UTR-H-elongata_contig62181:368..742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62181 369..742 -
1691679658.229155-UTR-H-elongata_contig62181:368..7421691679658.229155-UTR-H-elongata_contig62181:368..742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62181 369..742 -
1622931003.324869-UTR-H-elongata_contig62181:1030..19151622931003.324869-UTR-H-elongata_contig62181:1030..1915Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62181 1031..1915 -
1691679658.2667334-UTR-H-elongata_contig62181:1030..19151691679658.2667334-UTR-H-elongata_contig62181:1030..1915Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62181 1031..1915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.3069065-CDS-H-elongata_contig62181:742..10301622931003.3069065-CDS-H-elongata_contig62181:742..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62181 743..1030 -
1691679658.2427301-CDS-H-elongata_contig62181:742..10301691679658.2427301-CDS-H-elongata_contig62181:742..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62181 743..1030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62181.13787.1

>prot_H-elongata_contig62181.13787.1 ID=prot_H-elongata_contig62181.13787.1|Name=mRNA_H-elongata_contig62181.13787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MRQISYREIVGALMWAATITRPDISFAAHQLAKFNDNPGPIHWRAAQKAL
QYLWHTRNLGITYGGEPGGGPSYQRGSTQTTAPARTRVVQCLEGR*
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mRNA from alignment at H-elongata_contig62181:369..1915-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62181.13787.1 ID=mRNA_H-elongata_contig62181.13787.1|Name=mRNA_H-elongata_contig62181.13787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1547bp|location=Sequence derived from alignment at H-elongata_contig62181:369..1915- (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGACAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTG GCCGCAATGGAAAAGGGTGATCGCGCGCGAGATAGATGGGCAAACTGCTC GAGGCGTGTGGTAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGC ACGAGAGTAGTTTTCAAGCCCAAAATCGATAAGGATGGAAGGATCGAGAA GTATAAATGTCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCGTAC ACTACGAGGAATCCTCCTCTCCGACTTCTGCGCATGCCAGCATTAGGATG GTACTCAGCATGATCGAGGCTCTCGGCTGGGAGGGCGGCAGCTGGACGTC GACATCCTACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCC CGGAGGCATACCGTGACTCCAGGAAGCAAGTTGGCCTACTAAGGAAGGCA ATGTACGGACTCGTCCACGCCGGGCTGATGTGGTAAAAAGCGTTTGGGAT CGAGCTCGAGGCGAAGGGTTTTCAGAGATCTTAAGCCGACCCATGCGTGC TCCGGCGGATTCTCCACGGGACAGTGGTAGTTGTCATCGTGGTCTACCTC GACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGT GAGGGAACTGTGCTCCTGTTTCCCGATCAAGGATCTAGGGGTGGCTTCAT ATTACCTGGGATGCCACATCACCCGGGACCGGAACGCCGGGACACTGAAG TTCGATCAGCACCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGAC GAAGACCAACATCGTCCCGTCTGCGGCAGGAGGGAAAGTCCTTTCGAAAT CAGACAGCCCGCAGACGGACGCAGAGGTTGAAGAAATGCGCCAGATTTCC TACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACAATAACCAGGCC CGACATTTCATTCGCTGCGCACCAACTGGCAAAATTCAACGACAACCCGG GACCGATACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCAC ACTCGGAACCTCGGGATCACCTACGGAGGGGAACCGGGGGGAGGACCAAG TTATCAGCGTGGATCGACACAAACTACGGCACCTGCCCGGACACGCGTCG TTCAGTGTCTGGAGGGGCGGTGATGATGGCTGGCGGGGCCATCAGTTGGT TCTCACGAGTGCAAAAGGTAACGGCGGCGGCGGTGTCCGAATCGGAATAC GTCGCGCTGGCTGAGATGGTAAACGATTTACGTTTCCTACGACAGGTCAA GGCGTTCATGACCCCCCCAATCGACGCCGCCATCAAGATACACGAGGACA ACGAGGGCGCAATCAAGATGGCGAAAAAACGCTTCAGCAGTCGACGAACG AGACACGTGAACATCAAGCATCACATTGTCCGCGACGCGGTCGATGGGGG GGTGGTTCACATAGAATATGTTCGGTCCGGGGAACAACACGCCGACATCC TCACGAAGTCCGTCGACGTCAAGACATTTGAGAAGCACGCGAAATTC
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Coding sequence (CDS) from alignment at H-elongata_contig62181:369..1915-

>mRNA_H-elongata_contig62181.13787.1 ID=mRNA_H-elongata_contig62181.13787.1|Name=mRNA_H-elongata_contig62181.13787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig62181:369..1915- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTTCCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGC
GACAATAACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGCAAAAT
TCAACGACAACCCGGGACCGATACACTGGAGGGCAGCCCAGAAAGCGCTG
CAATATTTATGGCACACTCGGAACCTCGGGATCACCTACGGAGGGGAACC
GGGGGGAGGACCAAGTTATCAGCGTGGATCGACACAAACTACGGCACCTG
CCCGGACACGCGTCGTTCAGTGTCTGGAGGGGCGGTGAATGCGCCAGATT
TCCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACAATAACCAG
GCCCGACATTTCATTCGCTGCGCACCAACTGGCAAAATTCAACGACAACC
CGGGACCGATACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGG
CACACTCGGAACCTCGGGATCACCTACGGAGGGGAACCGGGGGGAGGACC
AAGTTATCAGCGTGGATCGACACAAACTACGGCACCTGCCCGGACACGCG
TCGTTCAGTGTCTGGAGGGGCGGTGA
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