prot_H-elongata_contig117633.1376.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117633.1376.1
Unique Nameprot_H-elongata_contig117633.1376.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
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BLAST of mRNA_H-elongata_contig117633.1376.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.300e-40
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 0 
Query:    1 DFRSVGTEVFDGGDLEAGEALRGMYDFMDDVVETQHVPTIQDPFDVKGKFHRRVGDRNISSSTQCPGKKQGKAALPATCEIFDVKELSVNNTPLLQR 97
            D+RS+G+EV++GGDLEAGE +RGMYDF+DD+VETQHVPTIQDPFD +G+FHR            CPGKKQGKAALP+TC+IFDVKEL VN+TPLL+R
Sbjct:  226 DYRSIGSEVYEGGDLEAGETIRGMYDFVDDIVETQHVPTIQDPFDHRGRFHR------------CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKR 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117633.1376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2B0_ECTSI1.300e-4070.10Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117633contigH-elongata_contig117633:584..1757 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117633.1376.1mRNA_H-elongata_contig117633.1376.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117633 584..1757 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117633.1376.1 ID=prot_H-elongata_contig117633.1376.1|Name=mRNA_H-elongata_contig117633.1376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
DFRSVGTEVFDGGDLEAGEALRGMYDFMDDVVETQHVPTIQDPFDVKGKF
HRRVGDRNISSSTQCPGKKQGKAALPATCEIFDVKELSVNNTPLLQR*
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