mRNA_H-elongata_contig117633.1376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117633.1376.1
Unique NamemRNA_H-elongata_contig117633.1376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117633.1376.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.300e-40
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 DFRSVGTEVFDGGDLEAGEALRGMYDFMDDVVETQHVPTIQDPFDVKGKFHRRVGDRNISSSTQCPGKKQGKAALPATCEIFDVKELSVNNTPLLQR 291
            D+RS+G+EV++GGDLEAGE +RGMYDF+DD+VETQHVPTIQDPFD +G+FHR            CPGKKQGKAALP+TC+IFDVKEL VN+TPLL+R
Sbjct:  226 DYRSIGSEVYEGGDLEAGETIRGMYDFVDDIVETQHVPTIQDPFDHRGRFHR------------CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKR 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117633.1376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2B0_ECTSI1.300e-4070.10Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117633contigH-elongata_contig117633:584..1757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue5.5e-33
Seed eggNOG ortholog2880.D7G2B0
EggNOG free text desc.Ribosomal protein S18
EggNOG OGs2C22N@1,2S2QV@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S18
Ec32 orthologEc-16_001820.1
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.3626702-CDS-H-elongata_contig117633:583..6861622929686.3626702-CDS-H-elongata_contig117633:583..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117633 584..686 -
1691679119.0168834-CDS-H-elongata_contig117633:583..6861691679119.0168834-CDS-H-elongata_contig117633:583..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117633 584..686 -
1622929686.383723-CDS-H-elongata_contig117633:1566..17571622929686.383723-CDS-H-elongata_contig117633:1566..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117633 1567..1757 -
1691679119.028049-CDS-H-elongata_contig117633:1566..17571691679119.028049-CDS-H-elongata_contig117633:1566..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117633 1567..1757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117633.1376.1prot_H-elongata_contig117633.1376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117633 584..1757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117633.1376.1

>prot_H-elongata_contig117633.1376.1 ID=prot_H-elongata_contig117633.1376.1|Name=mRNA_H-elongata_contig117633.1376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
DFRSVGTEVFDGGDLEAGEALRGMYDFMDDVVETQHVPTIQDPFDVKGKF
HRRVGDRNISSSTQCPGKKQGKAALPATCEIFDVKELSVNNTPLLQR*
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mRNA from alignment at H-elongata_contig117633:584..1757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117633.1376.1 ID=mRNA_H-elongata_contig117633.1376.1|Name=mRNA_H-elongata_contig117633.1376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1174bp|location=Sequence derived from alignment at H-elongata_contig117633:584..1757- (Himanthalia elongata Himel1 dioecious)
GACTTCCGCAGTGTAGGGACGGAGGTGTTCGACGGCGGCGACCTGGAGGC
CGGCGAGGCGCTCCGAGGAATGTATGACTTCATGGACGACGTCGTGGAAA
CTCAGCACGTGCCCACCATTCAAGATCCCTTCGATGTCAAGGGAAAGTTT
CACAGGCGAGTCGGCGATCGAAATATTTCCAGCTCGACGCAGTAGTAGTG
GCAATAGTGTGGCCCATAGTTGAGACATAGACGTGTTTAGGTTCGAAAGC
TCGGACTGACTCCAGGTGTGTGTGTGTGTGTGTTTGTGTGTGTATTTATT
AAATTGTAATCAATCCGGGCCTGTTATTCTTAGTTATTAAAGGCGACACG
CATTGATCCTCCCAATGTGTTTGTATTGTGTATACATTTATTGAAGTGCA
CATAACCGCGCAATCCGGCCCTGTCATGCTAGTCATTTTAGGCTACTCTC
GCATTGATGTCATAGTCCCAATGTTAGTGCGTGTGTATTTATTAAATTGT
ACACAACGCGCAATCCGGCCCTGCCATGCGAGTCGTTCTAGGCTACACGC
ATTCATCATCCCAATGGGGATCAACCATATTTGCTACAAAAACCTCTGAT
CAGACGTGACAAATGAGTGTGTGTGTGTATGTGTAAACATATTAAATTGC
ACATAGCCGCGCAATCCGGCGCCCACTCCTGTGTGTGTATTTATTAATTT
GAACATAACCGCGCTATCCAGCTATGTCATGCTAGTCCTTCTAGGCTACT
CTCGCATTGATAGGTCCTCCCAATGGGGGATCCAATAATATTTTCTACAA
AACCCTCTATTAACGATATTAACGATCAGACGTGACAAAGGAGACATACT
GCGTGCTACCTCCGTCGTCATCGAGTATTTGACATGCGCGACGCACAAAC
TGGAGTCAATCCAAACTTTTTTCGTGACGCAAGTTGTTGGGATTTACATT
TTCTCTGATAATCCTATTTTTTTTAATGTTTCCACAACTATAATACCCCA
TGGACCAAAGTTGTTAACCGTCAGCCCCTTTCCTCCCAATCCAAACGAAA
TTTGACCATGTTGAAAATCAGGTGCCCGGGGAAAAAGCAGGGCAAGGCCG
CTCTGCCAGCTACTTGCGAGATATTCGACGTCAAGGAGCTGTCCGTGAAT
AACACACCCCTGCTCCAGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig117633:584..1757-

>mRNA_H-elongata_contig117633.1376.1 ID=mRNA_H-elongata_contig117633.1376.1|Name=mRNA_H-elongata_contig117633.1376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig117633:584..1757- (Himanthalia elongata Himel1 dioecious)
GACTTCCGCAGTGTAGGGACGGAGGTGTTCGACGGCGGCGACCTGGAGGC
CGGCGAGGCGCTCCGAGGAATGTATGACTTCATGGACGACGTCGTGGAAA
CTCAGCACGTGCCCACCATTCAAGATCCCTTCGATGTCAAGGGAAAGTTT
CACAGGCGAGTCGGCGATCGAAATATTTCCAGCTCGACGCAGACTTCCGC
AGTGTAGGGACGGAGGTGTTCGACGGCGGCGACCTGGAGGCCGGCGAGGC
GCTCCGAGGAATGTATGACTTCATGGACGACGTCGTGGAAACTCAGCACG
TGCCCACCATTCAAGATCCCTTCGATGTCAAGGGAAAGTTTCACAGGCGA
GTCGGCGATCGAAATATTTCCAGCTCGACGCAGTGCCCGGGGAAAAAGCA
GGGCAAGGCCGCTCTGCCAGCTACTTGCGAGATATTCGACGTCAAGGAGC
TGTCCGTGAATAACACACCCCTGCTCCAGAGGTAAGTGCCCGGGGAAAAA
GCAGGGCAAGGCCGCTCTGCCAGCTACTTGCGAGATATTCGACGTCAAGG
AGCTGTCCGTGAATAACACACCCCTGCTCCAGAGGTAA
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