mRNA_H-elongata_contig61909.13755.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI) HSP 1 Score: 298 bits (763), Expect = 3.080e-91 Identity = 145/174 (83.33%), Postives = 159/174 (91.38%), Query Frame = 1
Query: 1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSAEAKASLQQV 522
QIDTF EEI+GRVD G+SHQ+YSDQTP+SGSMDDGDPTSTNLYLGNLAPTVTEEALQ +AFSPFGKVYSIKIMWPRTDEERARKRNCGF+SFWR++DAVNAKRAM DTD EG+RM+IGWGKPINKLANAVGVETK+E HD PPPDVLDPGLPE LQ L+ EAKASLQ++
Sbjct: 199 QIDTFFEEIKGRVDKGSSHQMYSDQTPSSGSMDDGDPTSTNLYLGNLAPTVTEEALQ------EAFSPFGKVYSIKIMWPRTDEERARKRNCGFLSFWRKEDAVNAKRAMMDTDFEGHRMSIGWGKPINKLANAVGVETKIEGHDAPPPDVLDPGLPESLQNLTPEAKASLQKI 366
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE) HSP 1 Score: 297 bits (760), Expect = 2.710e-90 Identity = 146/174 (83.91%), Postives = 158/174 (90.80%), Query Frame = 1
Query: 1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSAEAKASLQQV 522
QIDTF EEI+GRVD G+SHQ+YSDQTP+SGSMDDGDPTSTNLYLGNLAPTVTEEALQ +AFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRR+DAVNAKRAM DTD EG+RM+IGWGKPINKLANAVGVETK+E D PPPDVLDPGLPE LQ L+ EAKASLQ++
Sbjct: 103 QIDTFFEEIKGRVDKGSSHQMYSDQTPSSGSMDDGDPTSTNLYLGNLAPTVTEEALQ------EAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRAMMDTDFEGHRMSIGWGKPINKLANAVGVETKIEGDDAPPPDVLDPGLPESLQNLTPEAKASLQKI 270
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.190e-44 Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 1
Query: 4 IDTFLEEIRGRVDTGASHQ--------LYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANA 402
ID FL+EI+ R + + L + P GS DDGDP +TNLY+GNLAPTVTEE L + FS FG++YS+KIMWPRT+EERAR+RNCGFVSF +R DA +AK M D ++EGYR++IGWGK I KL NA
Sbjct: 43 IDDFLDEIKNRQEGKVGDKPSPFGADPLAPPEDPAKGSFDDGDPETTNLYVGNLAPTVTEETLH------ELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIEGYRISIGWGKAIKKLGNA 177
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA) HSP 1 Score: 164 bits (416), Expect = 6.450e-44 Identity = 90/154 (58.44%), Postives = 107/154 (69.48%), Query Frame = 1
Query: 1 QIDTFLEEIRGRVDT-GASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLD 459
++D FLEEI+ R + GA+ S++DGDPTSTNLY+G LAPTVTEE L + FS FG++YSIKIMWPRTDEERAR+RNCGFVSFWRR DA A+ AMQ DVEG + IGWGKPI+KL ++G ETKV D PP LD
Sbjct: 133 EMDAFLEEIKQRQENPGAAPVGGGGGDFGRASIEDGDPTSTNLYIGFLAPTVTEERLN------EIFSAFGEIYSIKIMWPRTDEERARRRNCGFVSFWRRGDAEAAREAMQGKDVEGMSIQIGWGKPISKLERSIGEETKVS---DLPPQTLD 277
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK) HSP 1 Score: 147 bits (372), Expect = 1.330e-38 Identity = 69/104 (66.35%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 88 GSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLAN 399
GS+DDGDP +TNLY+GNLAPT+TEE L D FS +G++YS+KIMWPRT+EER RKRNCGFVS+ RR DA +AK AM D D+EGYR+++GWGK I KLAN
Sbjct: 2 GSVDDGDPETTNLYVGNLAPTITEETLT------DIFSAYGEIYSVKIMWPRTEEERQRKRNCGFVSYMRRADAEDAKMAMHDQDLEGYRISVGWGKAIKKLAN 99
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.750e-38 Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 1
Query: 4 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLA---NAVGVETKVETHDDPPPDVLDPGLPEPLQ-KLSAEAKAS 510
ID+FL+EI+ R +G + S GS DDGDP +TNLY+GNLAP++TEEAL D F +G++YS+KIMWPRT+EERARKRNCGFVSF +R+DA AK A+ + +++G+R+++GWGK I KL+ N+V ++ P L PGLP+ + KL KA+
Sbjct: 178 IDSFLDEIKTRQSSG---RPPSPDPMARGSYDDGDPDTTNLYVGNLAPSMTEEALN------DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDGHRISVGWGKAIKKLSGSTNSVAAGGFLK----PKASALPPGLPKDMHAKLETVYKAA 337
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.470e-38 Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 1
Query: 4 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLA---NAVGVETKVETHDDPPPDVLDPGLPEPLQ-KLSAEAKAS 510
ID+FL+EI+ R +G + S GS DDGDP +TNLY+GNLAP++TEEAL D F +G++YS+KIMWPRT+EERARKRNCGFVSF +R+DA AK A+ + +++G+R+++GWGK I KL+ N+V ++ P L PGLP+ + KL KA+
Sbjct: 178 IDSFLDEIKTRQSSG---RPPSPDPMARGSYDDGDPDTTNLYVGNLAPSMTEEALN------DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDGHRISVGWGKAIKKLSGSTNSVAAGGFLK----PKASALPPGLPKDMHAKLETVYKAA 337
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: I2CPD2_NANGC (U2-associated protein SR140 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPD2_NANGC) HSP 1 Score: 139 bits (349), Expect = 2.250e-36 Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 1
Query: 1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSA 495
QID FLEE++ ++G S + + P GS+DDGDP +TNL++GNL+P TEE L+A F FG+VYS+KIMWPR++EERAR RN GFVSF+ R DA +AK +QD ++ +R+ IGW K + KLAN + T V P L PGL P L A
Sbjct: 158 QIDAFLEELKQSQESGVSKE---ETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEA------VFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLAN-LSPSTLVS------PSALPPGLSLPPSALHA 306
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: W7U2X6_9STRA (U2 snrnp-associated splicing factor putative n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2X6_9STRA) HSP 1 Score: 139 bits (349), Expect = 8.020e-35 Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 1
Query: 1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSA 495
QID FLEE++ ++G S + + P GS+DDGDP +TNL++GNL+P TEE L+A F FG+VYS+KIMWPR++EERAR RN GFVSF+ R DA +AK +QD ++ +R+ IGW K + KLAN + T V P L PGL P L A
Sbjct: 158 QIDAFLEELKQSQESGVSKE---ETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEA------VFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLAN-LSPSTLVS------PSALPPGLSLPPSALHA 306
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A484EBR3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBR3_BRELC) HSP 1 Score: 135 bits (340), Expect = 1.260e-33 Identity = 71/138 (51.45%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 4 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVET 417
ID FLEE++ R S + T GS D GDP +TNLY+GNLAPTVTEE L+A F +G+VYSIKIMWPR++EERARKRNCGFVSF++R+DA +A+ + D +EG M +GWGK + + A+ T
Sbjct: 172 IDDFLEEMKERGPAPVSMDTIA---LTKGSFDTGDPETTNLYVGNLAPTVTEEVLKAE------FGRYGEVYSIKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDDKQLEGQPMIVGWGKAVKIPSRAISSMT 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61909.13755.1 >prot_H-elongata_contig61909.13755.1 ID=prot_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTback to top mRNA from alignment at H-elongata_contig61909:1072..3223- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61909.13755.1 ID=mRNA_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2152bp|location=Sequence derived from alignment at H-elongata_contig61909:1072..3223- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61909:1072..3223- >mRNA_H-elongata_contig61909.13755.1 ID=mRNA_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig61909:1072..3223- (Himanthalia elongata Himel1 dioecious)back to top |