mRNA_H-elongata_contig61909.13755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61909.13755.1
Unique NamemRNA_H-elongata_contig61909.13755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 3.080e-91
Identity = 145/174 (83.33%), Postives = 159/174 (91.38%), Query Frame = 1
Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSAEAKASLQQV 522
            QIDTF EEI+GRVD G+SHQ+YSDQTP+SGSMDDGDPTSTNLYLGNLAPTVTEEALQ      +AFSPFGKVYSIKIMWPRTDEERARKRNCGF+SFWR++DAVNAKRAM DTD EG+RM+IGWGKPINKLANAVGVETK+E HD PPPDVLDPGLPE LQ L+ EAKASLQ++
Sbjct:  199 QIDTFFEEIKGRVDKGSSHQMYSDQTPSSGSMDDGDPTSTNLYLGNLAPTVTEEALQ------EAFSPFGKVYSIKIMWPRTDEERARKRNCGFLSFWRKEDAVNAKRAMMDTDFEGHRMSIGWGKPINKLANAVGVETKIEGHDAPPPDVLDPGLPESLQNLTPEAKASLQKI 366          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.710e-90
Identity = 146/174 (83.91%), Postives = 158/174 (90.80%), Query Frame = 1
Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSAEAKASLQQV 522
            QIDTF EEI+GRVD G+SHQ+YSDQTP+SGSMDDGDPTSTNLYLGNLAPTVTEEALQ      +AFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRR+DAVNAKRAM DTD EG+RM+IGWGKPINKLANAVGVETK+E  D PPPDVLDPGLPE LQ L+ EAKASLQ++
Sbjct:  103 QIDTFFEEIKGRVDKGSSHQMYSDQTPSSGSMDDGDPTSTNLYLGNLAPTVTEEALQ------EAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRAMMDTDFEGHRMSIGWGKPINKLANAVGVETKIEGDDAPPPDVLDPGLPESLQNLTPEAKASLQKI 270          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.190e-44
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    4 IDTFLEEIRGRVDTGASHQ--------LYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANA 402
            ID FL+EI+ R +     +        L   + P  GS DDGDP +TNLY+GNLAPTVTEE L       + FS FG++YS+KIMWPRT+EERAR+RNCGFVSF +R DA +AK  M D ++EGYR++IGWGK I KL NA
Sbjct:   43 IDDFLDEIKNRQEGKVGDKPSPFGADPLAPPEDPAKGSFDDGDPETTNLYVGNLAPTVTEETLH------ELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIEGYRISIGWGKAIKKLGNA 177          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 6.450e-44
Identity = 90/154 (58.44%), Postives = 107/154 (69.48%), Query Frame = 1
Query:    1 QIDTFLEEIRGRVDT-GASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLD 459
            ++D FLEEI+ R +  GA+            S++DGDPTSTNLY+G LAPTVTEE L       + FS FG++YSIKIMWPRTDEERAR+RNCGFVSFWRR DA  A+ AMQ  DVEG  + IGWGKPI+KL  ++G ETKV    D PP  LD
Sbjct:  133 EMDAFLEEIKQRQENPGAAPVGGGGGDFGRASIEDGDPTSTNLYIGFLAPTVTEERLN------EIFSAFGEIYSIKIMWPRTDEERARRRNCGFVSFWRRGDAEAAREAMQGKDVEGMSIQIGWGKPISKLERSIGEETKVS---DLPPQTLD 277          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK)

HSP 1 Score: 147 bits (372), Expect = 1.330e-38
Identity = 69/104 (66.35%), Postives = 84/104 (80.77%), Query Frame = 1
Query:   88 GSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLAN 399
            GS+DDGDP +TNLY+GNLAPT+TEE L       D FS +G++YS+KIMWPRT+EER RKRNCGFVS+ RR DA +AK AM D D+EGYR+++GWGK I KLAN
Sbjct:    2 GSVDDGDPETTNLYVGNLAPTITEETLT------DIFSAYGEIYSVKIMWPRTEEERQRKRNCGFVSYMRRADAEDAKMAMHDQDLEGYRISVGWGKAIKKLAN 99          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.750e-38
Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    4 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLA---NAVGVETKVETHDDPPPDVLDPGLPEPLQ-KLSAEAKAS 510
            ID+FL+EI+ R  +G   +  S      GS DDGDP +TNLY+GNLAP++TEEAL       D F  +G++YS+KIMWPRT+EERARKRNCGFVSF +R+DA  AK A+ + +++G+R+++GWGK I KL+   N+V     ++    P    L PGLP+ +  KL    KA+
Sbjct:  178 IDSFLDEIKTRQSSG---RPPSPDPMARGSYDDGDPDTTNLYVGNLAPSMTEEALN------DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDGHRISVGWGKAIKKLSGSTNSVAAGGFLK----PKASALPPGLPKDMHAKLETVYKAA 337          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.470e-38
Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    4 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLA---NAVGVETKVETHDDPPPDVLDPGLPEPLQ-KLSAEAKAS 510
            ID+FL+EI+ R  +G   +  S      GS DDGDP +TNLY+GNLAP++TEEAL       D F  +G++YS+KIMWPRT+EERARKRNCGFVSF +R+DA  AK A+ + +++G+R+++GWGK I KL+   N+V     ++    P    L PGLP+ +  KL    KA+
Sbjct:  178 IDSFLDEIKTRQSSG---RPPSPDPMARGSYDDGDPDTTNLYVGNLAPSMTEEALN------DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDGHRISVGWGKAIKKLSGSTNSVAAGGFLK----PKASALPPGLPKDMHAKLETVYKAA 337          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: I2CPD2_NANGC (U2-associated protein SR140 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPD2_NANGC)

HSP 1 Score: 139 bits (349), Expect = 2.250e-36
Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 1
Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSA 495
            QID FLEE++   ++G S +   +  P  GS+DDGDP +TNL++GNL+P  TEE L+A       F  FG+VYS+KIMWPR++EERAR RN GFVSF+ R DA +AK  +QD  ++ +R+ IGW K + KLAN +   T V       P  L PGL  P   L A
Sbjct:  158 QIDAFLEELKQSQESGVSKE---ETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEA------VFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLAN-LSPSTLVS------PSALPPGLSLPPSALHA 306          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: W7U2X6_9STRA (U2 snrnp-associated splicing factor putative n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2X6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.020e-35
Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 1
Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSA 495
            QID FLEE++   ++G S +   +  P  GS+DDGDP +TNL++GNL+P  TEE L+A       F  FG+VYS+KIMWPR++EERAR RN GFVSF+ R DA +AK  +QD  ++ +R+ IGW K + KLAN +   T V       P  L PGL  P   L A
Sbjct:  158 QIDAFLEELKQSQESGVSKE---ETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEA------VFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLAN-LSPSTLVS------PSALPPGLSLPPSALHA 306          
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A484EBR3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBR3_BRELC)

HSP 1 Score: 135 bits (340), Expect = 1.260e-33
Identity = 71/138 (51.45%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    4 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVET 417
            ID FLEE++ R     S    +    T GS D GDP +TNLY+GNLAPTVTEE L+A       F  +G+VYSIKIMWPR++EERARKRNCGFVSF++R+DA +A+  + D  +EG  M +GWGK +   + A+   T
Sbjct:  172 IDDFLEEMKERGPAPVSMDTIA---LTKGSFDTGDPETTNLYVGNLAPTVTEEVLKAE------FGRYGEVYSIKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDDKQLEGQPMIVGWGKAVKIPSRAISSMT 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSA5_ECTSI3.080e-9183.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCR2_9PHAE2.710e-9083.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DH44_9STRA1.190e-4455.32Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A836CAC0_9STRA6.450e-4458.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UX26_HETAK1.330e-3866.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WJA8_9STRA1.750e-3847.98Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WJ81_9STRA2.470e-3847.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CPD2_NANGC2.250e-3647.88U2-associated protein SR140 (Fragment) n=1 Tax=Nan... [more]
W7U2X6_9STRA8.020e-3547.88U2 snrnp-associated splicing factor putative n=4 T... [more]
A0A484EBR3_BRELC1.260e-3351.45Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61909contigH-elongata_contig61909:1072..3223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue4.5e-78
Seed eggNOG ortholog2880.D7FSA5
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2 snRNP-associated SURP
EggNOG OGsKOG0151@1,KOG0151@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmRNA splicing factor, Cwf21
Ec32 orthologEc-05_004750.1
Exons3
Model size522
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61909.13755.1prot_H-elongata_contig61909.13755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61909 1072..3223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.5464702-CDS-H-elongata_contig61909:1071..12441622930999.5464702-CDS-H-elongata_contig61909:1071..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61909 1072..1244 -
1691679656.7680917-CDS-H-elongata_contig61909:1071..12441691679656.7680917-CDS-H-elongata_contig61909:1071..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61909 1072..1244 -
1622930999.5623677-CDS-H-elongata_contig61909:2091..22511622930999.5623677-CDS-H-elongata_contig61909:2091..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61909 2092..2251 -
1691679656.785646-CDS-H-elongata_contig61909:2091..22511691679656.785646-CDS-H-elongata_contig61909:2091..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61909 2092..2251 -
1622930999.5787144-CDS-H-elongata_contig61909:3034..32231622930999.5787144-CDS-H-elongata_contig61909:3034..3223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61909 3035..3223 -
1691679656.7969549-CDS-H-elongata_contig61909:3034..32231691679656.7969549-CDS-H-elongata_contig61909:3034..3223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61909 3035..3223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61909.13755.1

>prot_H-elongata_contig61909.13755.1 ID=prot_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPT
VTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRR
QDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPD
VLDPGLPEPLQKLSAEAKASLQQV
back to top

mRNA from alignment at H-elongata_contig61909:1072..3223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61909.13755.1 ID=mRNA_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2152bp|location=Sequence derived from alignment at H-elongata_contig61909:1072..3223- (Himanthalia elongata Himel1 dioecious)
CAGATCGATACCTTCTTGGAAGAGATCCGAGGCAGAGTCGACACTGGGGC GAGTCACCAGCTGTACTCGGACCAGACACCTACCTCGGGGTCGATGGATG ACGGAGACCCGACCTCGACCAACCTCTATCTTGGTAACCTCGCTCCCACG GTTACGGAGGAGGCTCTGCAGGCAAGCATCCCCATTCCTGTCCCCTCTCC CCCACCTGTCCTGAGGAGGCTTTCCCATTTTTGTTGTTGTATCGATATAG CAGAAGTTTAGCTTTTCCAGCGATACCAAGTTTGACCCATATACATCGTC AAGGATCATTAGCGTTTTCTTGTAAGGGCAAGTGTACAACGCAGCCCGTG GGAGTGTTGATTTTATGCGATGGTTTTCACATCAGTTTTTTCCACGGATT GTTTTTAACGGGGGTTTTGACAGCTCCAGAAATTTCGCTGCATGGTTTTT GCGGTCGGCAATGTTCATATATATATATTAATATATACCGGTATTGGTTT TGACAAAATAACCCTTAAAAACGGAACCCTCATGAGCTGCTGATATCTGA ACGGATTTCGCTGCATATTTTTCGTCGGGTCGCCTCTGCTGCGAGATGTT CGAATCCTGCGGCAGCAGCAGCATTGTTTTTTTTTTGCTTTAGACTGAGG AGTCAAGTGCCTTTAAAATTAAATTAAAAACAGTAAATGCATAGCACCTC TGTGACTTTTGCTGTTTCATACAGAAGGGATATTGCCAACAACTGCACAC TTCACACGGTTCAATGTCGTCCCGTTCGGTTCCCCTCCATGCTGCGGTTT TCTTTCTGCCTTTTGCGCGGGGGTGTGGGGGGGGGGGGGGGGTGTTCATC CAAGAAATTGTTTTAATTATTTTTTAACCTTTTTTTTCGCAGCGCACGTC CCGTCGTCTGACTCGCTCCATCTCTTCCCCCTATCTCCGGGGTTTCTATA TTTTTTGTGTGCTTTTTTTCAGGATGCGTTTTCCCCATTCGGGAAGGTAT ACTCGATCAAGATAATGTGGCCGCGGACGGACGAAGAGCGCGCTCGCAAG AGAAACTGTGGCTTCGTAAGCTTCTGGCGGAGGCAGGACGCCGTCAACGC GAAGCGCGCCATGCAGGACACCGATGTCGAGGGTGCGGAGAGAAAGCGTT CGTGGGGGAGGGAGGGATGCCTAGGGAAGGAAAAGTAGGGGGGGTGGATT CCGTTTCGGCGAGTGACGGGCGGGGGAGGGCGAGGGAGTTAAATATGACA TAAATGTGTAATGCCGTAGGTGGCCAATTAATCAGCAGTACCGCTCGTGG TTGACGAATAAACCGCGGGAAATTGATTTTAAATTCCCATATTCGAAGAG TTTTTTTGGATCGTGGAAAGAGTCTTCAGTCAAAATGAAAGCGGGGGTAA ATCGAATATCTTGTCAATCATGTGGATGTTTTTCTCAAAAAACGTATGAA CCAATTTTAACCCTCTAACCAACCACGCCTTCTTAGCCACCGTGAGAGAT GCAGCCCAGGGTAACTTAGTTTTGTGGTGATCCGGATAGGTCCTATCGAT GAATGCTTCACCTGTAAAGATGGTGTAATCAATGCATAGAAGTTCATGGG ACTGTTATCAAAGACTAATTTTAAGAGTATTGCGGGTGTCGATGTGGTTG GAGATCTGTGTCGATTCGTTGTGTTTCAATTGAATCCGTTCAAGTTTATT TTTTCATTTATTCATTTACGAAGTATTTAGTATTTACTCATTTTATGTGT TCGTTGAATCCTTCTGTTTGCCGTTTACTCATTGACTCTTGCCACTATTG ACTCATTTGTTTGTTTGTTTATTCATCCAAATATTGACTTAGTTATTCAG TTACCATTCATTTGTTCATTCAATTATTCATTCAATCATTCATTGATTCG TTCGACAGCTGTTATGGAACACCCACCAACCCCATGCCCACCCCGTGCAC TTCTCTGTCCCCTCTTCCCCCTCGGGCAGGCTACCGTATGACGATCGGGT GGGGCAAGCCCATCAACAAGCTGGCGAACGCTGTCGGCGTCGAGACCAAG GTTGAAACACACGACGACCCCCCGCCAGATGTGCTTGACCCCGGACTGCC AGAACCCCTCCAGAAACTTTCGGCGGAGGCAAAGGCTAGCCTACAGCAGG TT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61909:1072..3223-

>mRNA_H-elongata_contig61909.13755.1 ID=mRNA_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig61909:1072..3223- (Himanthalia elongata Himel1 dioecious)
CAGATCGATACCTTCTTGGAAGAGATCCGAGGCAGAGTCGACACTGGGGC
GAGTCACCAGCTGTACTCGGACCAGACACCTACCTCGGGGTCGATGGATG
ACGGAGACCCGACCTCGACCAACCTCTATCTTGGTAACCTCGCTCCCACG
GTTACGGAGGAGGCTCTGCAGGCAAGCATCCCCATTCCTCAGATCGATAC
CTTCTTGGAAGAGATCCGAGGCAGAGTCGACACTGGGGCGAGTCACCAGC
TGTACTCGGACCAGACACCTACCTCGGGGTCGATGGATGACGGAGACCCG
ACCTCGACCAACCTCTATCTTGGTAACCTCGCTCCCACGGTTACGGAGGA
GGCTCTGCAGGCAAGCATCCCCATTCCTGATGCGTTTTCCCCATTCGGGA
AGGTATACTCGATCAAGATAATGTGGCCGCGGACGGACGAAGAGCGCGCT
CGCAAGAGAAACTGTGGCTTCGTAAGCTTCTGGCGGAGGCAGGACGCCGT
CAACGCGAAGCGCGCCATGCAGGACACCGATGTCGAGGGATGCGTTTTCC
CCATTCGGGAAGGTATACTCGATCAAGATAATGTGGCCGCGGACGGACGA
AGAGCGCGCTCGCAAGAGAAACTGTGGCTTCGTAAGCTTCTGGCGGAGGC
AGGACGCCGTCAACGCGAAGCGCGCCATGCAGGACACCGATGTCGAGGGC
TACCGTATGACGATCGGGTGGGGCAAGCCCATCAACAAGCTGGCGAACGC
TGTCGGCGTCGAGACCAAGGTTGAAACACACGACGACCCCCCGCCAGATG
TGCTTGACCCCGGACTGCCAGAACCCCTCCAGAAACTTTCGGCGGAGGCA
AAGGCTAGCCTACAGCAGGTTGCTACCGTATGACGATCGGGTGGGGCAAG
CCCATCAACAAGCTGGCGAACGCTGTCGGCGTCGAGACCAAGGTTGAAAC
ACACGACGACCCCCCGCCAGATGTGCTTGACCCCGGACTGCCAGAACCCC
TCCAGAAACTTTCGGCGGAGGCAAAGGCTAGCCTACAGCAGGTT
back to top