mRNA_H-elongata_contig6170.13723.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 349 bits (896), Expect = 7.540e-108 Identity = 174/205 (84.88%), Postives = 182/205 (88.78%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
IE ANY+FS IFT+EAI+KILA R+AYFIDPWNRFDIFIVIGTNLGL +LW GRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATV + +ANFQTFWGSMVLLLRFSTGENWNGFMYDMVA RE C S PVYDPDMCGFT HANCTPLNGCGSWSI+PYM
Sbjct: 1319 IEGANYSFSFIFTVEAIIKILAFRRAYFIDPWNRFDIFIVIGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVGLRGA-----VDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYM 1518
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 345 bits (884), Expect = 4.990e-107 Identity = 174/221 (78.73%), Postives = 184/221 (83.26%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPH----------------EANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
IE ANY+FS IFT+EAI+KILA R+AYFIDPWNRFDIFIV+GTNLGL +LW GRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATV + + H +ANFQTFWGSMVLLLRFSTGENWNGFMYDMVA RE C S PVYDPDMCGFT HANCTPLNGCGSWSI+PYM
Sbjct: 821 IEGANYSFSFIFTVEAIIKILAFRRAYFIDPWNRFDIFIVMGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVSEPGHLFSSLWTHNGYALIMVGLRGAVDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYM 1041
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A812VYI9_SYMMI (Scn4ab protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYI9_SYMMI) HSP 1 Score: 240 bits (613), Expect = 5.500e-73 Identity = 119/205 (58.05%), Postives = 145/205 (70.73%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
+E N F++IFTLEA++KI AL+ YF D WNRFD +V+GTN GL+ LW +G + G TI+RTFRI R+LRL+ G ES++QLFNTLLLTLP LGN+ ALLFL FFIYAVMGVQLFA V + ANF+ F +M+ LLRFSTGENW+GFMYD+ C + P YD CGF CTPLNGCGS++IYPYM
Sbjct: 29 LETMNTMFAMIFTLEAVIKISALKSKYFSDMWNRFDFVVVVGTNAGLIFLWISGSNIGMTVTILRTFRIARLLRLMNGAESISQLFNTLLLTLPGLGNIAALLFLLFFIYAVMGVQLFAKVEYSGDHD-----EHANFRDFGIAMISLLRFSTGENWDGFMYDVGRKSSTCVNDPDYDSAYCGFNDRTGCTPLNGCGSFAIYPYM 228
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A662WJW7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJW7_9STRA) HSP 1 Score: 206 bits (524), Expect = 7.730e-58 Identity = 105/205 (51.22%), Postives = 141/205 (68.78%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
+E +NY FS IF LEAIVKI+ LR+ Y+ D WN FD IV+GT+ G++ + G + G+ A+ +R+FR+GR+ RL+ S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+ T +NFQT G+MV L+R STGE WN M+++ A ++ C + P YDP+MCGF+ +C PLNGCGS + Y+
Sbjct: 1073 LEYSNYFFSTIFALEAIVKIIGLRRNYWKDSWNLFDFVIVLGTSCGMLYHFFGGSTVGTAASAVRSFRVGRLFRLLHSAPSLRQLFNTLLVTLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKLGPLNT-----SSSNFQTIAGAMVTLVRCSTGERWNDLMFEL-ANQDDCVTDPSYDPNMCGFSSDVDCVPLNGCGSPVAFAYL 1271
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A8K1CRX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRX9_PYTOL) HSP 1 Score: 205 bits (522), Expect = 1.460e-57 Identity = 108/205 (52.68%), Postives = 134/205 (65.37%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
IE +NY F+LIFT EA +KI L Y+ D WNRFD IV+G+ +GL+ W G S G++AT R FR+GR+ RL++ S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+ L P NFQT +MV L+R +TGE WN MY++ +T E C P YDP MCGF NC LNGCGS + Y+
Sbjct: 1203 IEFSNYVFALIFTCEAAIKITGLGHYYWKDAWNRFDFVIVLGSFIGLLYQWAGGSSVGALATSFRGFRVGRLFRLIQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFRD----LITP-TTNFQTIERAMVTLIRCATGERWNDVMYELAST-EDCVEDPTYDPTMCGFNNSPNCVALNGCGSPVAFIYL 1401
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A662XYJ8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYJ8_9STRA) HSP 1 Score: 204 bits (519), Expect = 3.610e-57 Identity = 106/205 (51.71%), Postives = 139/205 (67.80%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
+E +NY FS IF LEAIVKI+ LR+ Y+ D WN FD IV+GT+ G + + G + G+ A+ +R+FR+GR+ RL+ S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+ T ANFQT G+MV L+R STGE WN M+++ A ++ C + P YDP+MCGF+ +C PLNGCGS + Y
Sbjct: 502 LEYSNYFFSTIFALEAIVKIIGLRRNYWKDSWNLFDFVIVLGTSCGNLYHFLGGSTVGTSASAVRSFRVGRLFRLLHSAPSLRQLFNTLLVTLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKLGPLNT-----SSANFQTIAGAMVTLVRCSTGERWNDLMFEL-ANQDDCVTDPSYDPNMCGFSSDVDCVPLNGCGSPVAFAYF 700
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A7S4DBN8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBN8_HETAK) HSP 1 Score: 200 bits (509), Expect = 7.710e-56 Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATR--EGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
+E NY F+L+FT+EA++K+ ALR+AYF + WN FD IV+ TNLGL+ W G S GSIA+IIRTFRIGRV RLV E++ QLF TL TL L NV ALLFL FI++V +QLF+TV + T NFQTF S++ L+ FSTGENWNGFM+ VAT + C S Y MCG+T C PL+GCG+ + P+M
Sbjct: 709 LEYINYFFALVFTVEAVIKLFALRKAYFKEGWNCFDFSIVLATNLGLLFYWVFGSSIGSIASIIRTFRIGRVTRLVSRAETLNQLFQTLFSTLVGLSNVAALLFLVLFIHSVTAMQLFSTVALHDDLT-----EHMNFQTFGKSLLTLIAFSTGENWNGFMWS-VATDFDDSCSSSVSYSATMCGYTRSPGCEPLDGCGNPYVVPFM 909
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A2D4C6S1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6S1_PYTIN) HSP 1 Score: 200 bits (509), Expect = 8.170e-56 Identity = 104/205 (50.73%), Postives = 134/205 (65.37%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
IE NY F+L+F LEA +K+ L Y+ D WN FD +V+G+ LG++ W G S G++AT IR+FR+GR+ RLV+ S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+ + + ANFQ+ +MV L+R +TGE WN MY++ AT+ C P YDP MCGF C LNGCGS + YM
Sbjct: 1275 IEFTNYFFALVFALEAAIKVYGLGHYYWKDRWNIFDFVLVLGSFLGMLYQWVGGSSVGTVATSIRSFRVGRLFRLVQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFGE-----LITRTANFQSITRAMVTLVRCATGERWNDMMYEL-ATQSDCTPDPDYDPHMCGFNNTLGCVDLNGCGSPVAFIYM 1473
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: K3WQ22_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ22_GLOUD) HSP 1 Score: 194 bits (494), Expect = 4.460e-55 Identity = 105/205 (51.22%), Postives = 135/205 (65.85%), Query Frame = 1
Query: 1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
IE +NY F+ IFTLEA+VKI L + Y+ D WN FD IV G+ LG++ W G S G++A +R+FR R+ RLV+ S+ QLFNTLL+TLPSL ++G LLFL FFIYA MGVQLFA V+ L P ANFQT +MV L+R +TGE WN MY++ ++++ C P Y+P+MCGF A C LNGCGS Y Y
Sbjct: 425 IEYSNYVFAFIFTLEAVVKIAGLGRYYWKDSWNIFDFLIVSGSLLGMLYTWIGGSSVGTVAGAVRSFRTWRLFRLVQSAPSLRQLFNTLLITLPSLVSIGGLLFLIFFIYAAMGVQLFAKVKFGD----LVTP-TANFQTIARAMVTLVRCATGERWNDLMYEL-SSQDDCVEDPPYNPEMCGFNNTAGCKMLNGCGSPVAYAYF 623
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP) HSP 1 Score: 193 bits (490), Expect = 2.880e-53 Identity = 100/201 (49.75%), Postives = 134/201 (66.67%), Query Frame = 1
Query: 13 NYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
NY FS +F LEA++KI+ L + Y+ D WN FD +V+G G++ G S G+ A+ +R+FR+GR+ RLV S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+ + L P ANFQ+ +M+ L+R +TGE WN MY++ A +E C S P YDP+ CG + A+C PLNGCGS + Y+
Sbjct: 1105 NYFFSAVFALEAVLKIIGLGKYYWKDRWNVFDFIVVLGALFGVIYQMFGGSSVGAAASTVRSFRVGRLFRLVHSAPSLRQLFNTLLITLPSLANIGGLLFLVFFIYAAMGVQLFAKVKFGE----LITP-TANFQSLLKAMITLVRCATGERWNDMMYEL-ANQEDCISDPPYDPNSCGISSDADCIPLNGCGSPVAFVYL 1299 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6170.13723.1 >prot_H-elongata_contig6170.13723.1 ID=prot_H-elongata_contig6170.13723.1|Name=mRNA_H-elongata_contig6170.13723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLback to top mRNA from alignment at H-elongata_contig6170:8132..9837- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6170.13723.1 ID=mRNA_H-elongata_contig6170.13723.1|Name=mRNA_H-elongata_contig6170.13723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1706bp|location=Sequence derived from alignment at H-elongata_contig6170:8132..9837- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6170:8132..9837- >mRNA_H-elongata_contig6170.13723.1 ID=mRNA_H-elongata_contig6170.13723.1|Name=mRNA_H-elongata_contig6170.13723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig6170:8132..9837- (Himanthalia elongata Himel1 dioecious)back to top |