mRNA_H-elongata_contig6164.13715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6164.13715.1
Unique NamemRNA_H-elongata_contig6164.13715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA)

HSP 1 Score: 169 bits (428), Expect = 8.770e-53
Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAGVA 303
            ++VEETLERIKVQPGVEGYVICDM+GQVLRR PTMSQETAE YA +M HLA KARGVVRDLNPK E+ Y+RIRAKRHE++ AFD++FLAI+IQRWQPAG +
Sbjct:    2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAGTS 102          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.720e-47
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRD 258
            SEVEETLERIKVQPGVEGYVICDMEGQVLRR PTMSQETAE YAEAMRHLALKARGVVRD+NPKGE+KYMRIRAKRHE+L AF  +
Sbjct:    2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.830e-45
Identity = 72/99 (72.73%), Postives = 86/99 (86.87%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
            SEVEETLER+KVQ GVEGYVIC+ +G VLRR P MSQE AE YA++MRHLA KARGVVRDLNP+ E++Y+RIRAKRHE++ AFD +FL I+IQ+W PAG
Sbjct:    2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPAG 100          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.130e-44
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
            SEVEETLER+KVQPGVEGYVIC+ +GQVLRR P+M Q+ AE YA++MR LA KARGVVRDLNP+ E++Y+RIRA+R E++ A+D +FL I+IQRWQPA 
Sbjct:    2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPAA 100          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN)

HSP 1 Score: 147 bits (371), Expect = 4.170e-44
Identity = 69/99 (69.70%), Postives = 84/99 (84.85%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
            SEVEETLER+K+Q GVEGYVIC  +GQVLRRLP+M+Q  AE YA+ M  L+ KARGVVRDLNPK E++Y+R+RAKRHE+L AFD++FL I+IQRW PA 
Sbjct:    2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.850e-40
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
            SEVEET+ERIKVQ GVEGYVIC+ +GQVLRR PTMS E AE YA  M  L  +ARGVVRDL+PK E+ Y+R+RAKRHEI+ A+D  F+ I+IQRW PA 
Sbjct:    2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPAA 100          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI)

HSP 1 Score: 128 bits (322), Expect = 7.180e-37
Identity = 63/83 (75.90%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAF 249
            SEVEET+ERIKVQPGVEGYVIC+ +GQVLRR PTM+QETAE Y+EAM  L+ +AR VVRDLNPK E+KY+R+RAKRHEI+ AF
Sbjct:    1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.460e-34
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPA 294
            SEVE T+ERIK   GVEGYVIC+  GQVLRR PTMS + A+ YA  M  L  +ARGV+RDL+PK ++KY+R+R+K+HEI+ AFD  F+ II+QRW  A
Sbjct:    8 SEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQFVVIILQRWSAA 105          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.230e-34
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQE--TAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPA 294
            SEVEETLERIK + GVEGYVIC+  G VLRR P   ++   A  YAE+MR LA KAR VVRDL+P+ E++Y+RIRAK HE++ AFD +FL ++IQ+W+PA
Sbjct:    7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106          
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.880e-34
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAGVA 303
            S+VEETLERIK++PGV GYVIC+ +G VLRR P+M+ E A+ YA AM+ LA KA GVVRD+NP   ++Y+RIR KR E++ A D  FL I+IQRW PA  A
Sbjct:    2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPAEQA 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIL5_9STRA8.770e-5379.21Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
D7FWL6_ECTSI1.720e-4789.53Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6T7GUX9_9STRA1.830e-4572.73Dynein light chain roadblock n=1 Tax=Florenciella ... [more]
A0A6U1LT09_9STRA2.130e-4469.70Dynein light chain roadblock n=1 Tax=Fibrocapsa ja... [more]
F0Y2Y8_AURAN4.170e-4469.70Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A7S3H6W3_9STRA5.850e-4067.68Dynein light chain roadblock n=1 Tax=Spumella elon... [more]
A0A812SWU6_SYMMI7.180e-3775.90DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A7S0SZ17_9STRA3.460e-3460.20Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2F8W6_9STRA4.230e-3461.00Dynein light chain roadblock n=1 Tax=Dictyocha spe... [more]
A0A7S1XSI3_9STRA4.880e-3460.40Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6164contigH-elongata_contig6164:3565..5001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog2880.D7FWL6
KEGG koko:K10419
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0045505,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-11_002380.1
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6164.13715.1prot_H-elongata_contig6164.13715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6164 3565..5001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.213755-CDS-H-elongata_contig6164:3564..36451622930994.213755-CDS-H-elongata_contig6164:3564..3645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6164 3565..3645 +
1691679654.365675-CDS-H-elongata_contig6164:3564..36451691679654.365675-CDS-H-elongata_contig6164:3564..3645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6164 3565..3645 +
1622930994.239344-CDS-H-elongata_contig6164:4312..44811622930994.239344-CDS-H-elongata_contig6164:4312..4481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6164 4313..4481 +
1691679654.3799396-CDS-H-elongata_contig6164:4312..44811691679654.3799396-CDS-H-elongata_contig6164:4312..4481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6164 4313..4481 +
1622930994.2554004-CDS-H-elongata_contig6164:4945..50011622930994.2554004-CDS-H-elongata_contig6164:4945..5001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6164 4946..5001 +
1691679654.3905025-CDS-H-elongata_contig6164:4945..50011691679654.3905025-CDS-H-elongata_contig6164:4945..5001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6164 4946..5001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6164.13715.1

>prot_H-elongata_contig6164.13715.1 ID=prot_H-elongata_contig6164.13715.1|Name=mRNA_H-elongata_contig6164.13715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHL
ALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAGV
A*
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mRNA from alignment at H-elongata_contig6164:3565..5001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6164.13715.1 ID=mRNA_H-elongata_contig6164.13715.1|Name=mRNA_H-elongata_contig6164.13715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-elongata_contig6164:3565..5001+ (Himanthalia elongata Himel1 dioecious)
TCGGAGGTGGAAGAGACTCTCGAGCGAATCAAGGTGCAGCCGGGCGTCGA AGGATATGTCATCTGTGACATGGAAGGACAGGTGGGAGCCGTCGCGAAAG AGCTACAGCTCTTCGCCGTTGTATTATCTGCACGGTCTACTTCATATGTG ATCTCTCTTGCCTGGTTCTTCTTGCCTCTAACGGATGTCCCCTACGAAGA ATATTTTTTGGACGGAAGCACGTAATATTTTGTGTGATTTTGTTTTGCTT ATATATATTCACTATTGTTTGTTTATTATTTTATTTTAAAAATATGTTTA CTATTTGGCGAAACACAGGAGATGGGGGATATTTACAAACCGATCCGGCG CCCCCTTACGCGTCTCCACGCGTTACGCCACCTAATACAAATTGATTTTT TTAAAAGGGTATCGACCCCATCGCCACCATCATCATAGTAGTCTGATAAC AACTTTTGTCATTTTCAGCTCACGTCCTCACGCTTGCAATAATATAGATG GTTTTTGTTTCAACTTCTTCAGTTTAGTGTCAAGGCATTAGCAATACGGA CCACCGCCGTCTCCTGTGTGCAGTACGCCTCCTGTTCAGTATCTTCAACC AATCGTCGTCGTCGCGGAAAACGTGGTGAAATATCTATACATCCCTGGGA GTGAAACACTTGGAAAACGGAATAATTTCCCTCCGGGCGATCAAATGTAA CGATATTCTTCACCCTCGCAAAATCATGTCGACCACGCTGATGCTCAGGT TTTGAGGAGGTTGCCAACGATGTCGCAAGAAACGGCCGAGTTCTACGCGG AGGCCATGCGACATCTTGCGCTCAAGGCCCGCGGGGTTGTAAGGGATCTC AACCCCAAGGGCGAGATGAAGTACATGCGTATACGTGCAAAGCGCCACGA GATCCTGGCGGCATTCGGTGAGCATGGCCTCATCACTCAGCGATTGTATA AGCAGTAAACGCTATTTTGAACGCAAATATACGCTTTTTTTTTTGTTTTT TTTTTCGGCGGCGGGGGCTGGAGTGAGGATAGATGTTTCCACGAAACGTC GCGTGGATTGCGGAGTACCGCAAGATGATCTTATTTTCCCATCATTATCC CATGTGATGTGCTGTGCCAGAGCTTACTCTACGTAGGGCGCGGTGGTAAC ATATACTCAAATAACCACGCAAAGCGCTAAACTTGTATTCGGCGTTATGG AGACGCTCCTGAAATGATTACGCCTTGCCATCAAAACAATCGCTCGTATC TACTGCTACAGTTAGGTGCAGTAGACCATGCTGCAATTTTCCGATGCAGC TTCTTCTCTCACTCGCTCTTGCTTGCGCTGTTCTGCCGCACTCGCGCCGA CCGACTGACTGACCCGTGGTCATGCCATCAGACCGAGATTTTCTCGCCAT CATAATCCAGCGCTGGCAGCCTGCTGGGGTGGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig6164:3565..5001+

>mRNA_H-elongata_contig6164.13715.1 ID=mRNA_H-elongata_contig6164.13715.1|Name=mRNA_H-elongata_contig6164.13715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig6164:3565..5001+ (Himanthalia elongata Himel1 dioecious)
TCGGAGGTGGAAGAGACTCTCGAGCGAATCAAGGTGCAGCCGGGCGTCGA
AGGATATGTCATCTGTGACATGGAAGGACAGTCGGAGGTGGAAGAGACTC
TCGAGCGAATCAAGGTGCAGCCGGGCGTCGAAGGATATGTCATCTGTGAC
ATGGAAGGACAGGTTTTGAGGAGGTTGCCAACGATGTCGCAAGAAACGGC
CGAGTTCTACGCGGAGGCCATGCGACATCTTGCGCTCAAGGCCCGCGGGG
TTGTAAGGGATCTCAACCCCAAGGGCGAGATGAAGTACATGCGTATACGT
GCAAAGCGCCACGAGATCCTGGCGGCATTCGGTTTTGAGGAGGTTGCCAA
CGATGTCGCAAGAAACGGCCGAGTTCTACGCGGAGGCCATGCGACATCTT
GCGCTCAAGGCCCGCGGGGTTGTAAGGGATCTCAACCCCAAGGGCGAGAT
GAAGTACATGCGTATACGTGCAAAGCGCCACGAGATCCTGGCGGCATTCG
ACCGAGATTTTCTCGCCATCATAATCCAGCGCTGGCAGCCTGCTGGGGTG
GCATGAACCGAGATTTTCTCGCCATCATAATCCAGCGCTGGCAGCCTGCT
GGGGTGGCATGA
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