mRNA_H-elongata_contig6164.13715.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA) HSP 1 Score: 169 bits (428), Expect = 8.770e-53 Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAGVA 303
++VEETLERIKVQPGVEGYVICDM+GQVLRR PTMSQETAE YA +M HLA KARGVVRDLNPK E+ Y+RIRAKRHE++ AFD++FLAI+IQRWQPAG +
Sbjct: 2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAGTS 102
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.720e-47 Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRD 258
SEVEETLERIKVQPGVEGYVICDMEGQVLRR PTMSQETAE YAEAMRHLALKARGVVRD+NPKGE+KYMRIRAKRHE+L AF +
Sbjct: 2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.830e-45 Identity = 72/99 (72.73%), Postives = 86/99 (86.87%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
SEVEETLER+KVQ GVEGYVIC+ +G VLRR P MSQE AE YA++MRHLA KARGVVRDLNP+ E++Y+RIRAKRHE++ AFD +FL I+IQ+W PAG
Sbjct: 2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPAG 100
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA) HSP 1 Score: 148 bits (373), Expect = 2.130e-44 Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
SEVEETLER+KVQPGVEGYVIC+ +GQVLRR P+M Q+ AE YA++MR LA KARGVVRDLNP+ E++Y+RIRA+R E++ A+D +FL I+IQRWQPA
Sbjct: 2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPAA 100
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN) HSP 1 Score: 147 bits (371), Expect = 4.170e-44 Identity = 69/99 (69.70%), Postives = 84/99 (84.85%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
SEVEETLER+K+Q GVEGYVIC +GQVLRRLP+M+Q AE YA+ M L+ KARGVVRDLNPK E++Y+R+RAKRHE+L AFD++FL I+IQRW PA
Sbjct: 2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA) HSP 1 Score: 137 bits (345), Expect = 5.850e-40 Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAG 297
SEVEET+ERIKVQ GVEGYVIC+ +GQVLRR PTMS E AE YA M L +ARGVVRDL+PK E+ Y+R+RAKRHEI+ A+D F+ I+IQRW PA
Sbjct: 2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPAA 100
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI) HSP 1 Score: 128 bits (322), Expect = 7.180e-37 Identity = 63/83 (75.90%), Postives = 74/83 (89.16%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAF 249
SEVEET+ERIKVQPGVEGYVIC+ +GQVLRR PTM+QETAE Y+EAM L+ +AR VVRDLNPK E+KY+R+RAKRHEI+ AF
Sbjct: 1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.460e-34 Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPA 294
SEVE T+ERIK GVEGYVIC+ GQVLRR PTMS + A+ YA M L +ARGV+RDL+PK ++KY+R+R+K+HEI+ AFD F+ II+QRW A
Sbjct: 8 SEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQFVVIILQRWSAA 105
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA) HSP 1 Score: 122 bits (306), Expect = 4.230e-34 Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQE--TAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPA 294
SEVEETLERIK + GVEGYVIC+ G VLRR P ++ A YAE+MR LA KAR VVRDL+P+ E++Y+RIRAK HE++ AFD +FL ++IQ+W+PA
Sbjct: 7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA) HSP 1 Score: 122 bits (305), Expect = 4.880e-34 Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEILAAFDRDFLAIIIQRWQPAGVA 303
S+VEETLERIK++PGV GYVIC+ +G VLRR P+M+ E A+ YA AM+ LA KA GVVRD+NP ++Y+RIR KR E++ A D FL I+IQRW PA A
Sbjct: 2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPAEQA 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6164.13715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6164.13715.1 >prot_H-elongata_contig6164.13715.1 ID=prot_H-elongata_contig6164.13715.1|Name=mRNA_H-elongata_contig6164.13715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp SEVEETLERIKVQPGVEGYVICDMEGQVLRRLPTMSQETAEFYAEAMRHLback to top mRNA from alignment at H-elongata_contig6164:3565..5001+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6164.13715.1 ID=mRNA_H-elongata_contig6164.13715.1|Name=mRNA_H-elongata_contig6164.13715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-elongata_contig6164:3565..5001+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6164:3565..5001+ >mRNA_H-elongata_contig6164.13715.1 ID=mRNA_H-elongata_contig6164.13715.1|Name=mRNA_H-elongata_contig6164.13715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig6164:3565..5001+ (Himanthalia elongata Himel1 dioecious)back to top |