mRNA_H-elongata_contig61485.13704.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: D8LCW7_ECTSI (Zinc transporter zupT, Zinc transporter ZIP, metal ion transmembrane transporter activity n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCW7_ECTSI) HSP 1 Score: 290 bits (741), Expect = 7.990e-88 Identity = 192/355 (54.08%), Postives = 224/355 (63.10%), Query Frame = 3
Query: 3 ADAYLYGTLSLFGGIVFYKCLDYVVHLMEGD-AGHHDVDIEMYDLD-------ASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSS-GSTIAPSPDLHTLNLRMADKAQQQHPH---NQTTSGAVQAT-----VEDLESG-GVANAESA--------------------------GGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
AD+YLY TLSLFGG++ YK +D VVHL+EG H VDI +YDLD +SPR + K P + + E P +HNVV+EL+S GS + PSPDL+TL L MA K Q Q P T SG + V +E G GV E A G +EKLVRMGL+TA+AIG+HNFPEG+ATFVA LSDP V XXXXXXXXXXXXCVAIPVYYATGNRWKAFGWA LSGVSEPIGAGL W+ILKD M+++VYG+LFGVV GMM+ I++ ELIPTAVRYDPTD+VTTNSIIAGM IMALSL +F Y
Sbjct: 81 ADSYLYATLSLFGGVLLYKGIDLVVHLLEGGPVRDHHVDISLYDLDGSSGSSESSPRTAPAATADKKKRKKSAPQLGGANSGNNPNDGREP------FPADHNVVVELASRGSAVRPSPDLNTLQLSMAGKVQAQQPSPVSELTPSGGGNSNNKTGVVGFMEEGSGVDQMEEAPSAXXXXXXXAPSGTVQSERGTPAVADGDNEKLVRMGLLTAVAIGIHNFPEGLATFVAALSDPSVXXXXXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDIMSELVYGLLFGVVAGMMVNITIHELIPTAVRYDPTDKVTTNSIIAGMAIMALSLTLFLY 429
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A6V2QEW8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QEW8_HETAK) HSP 1 Score: 211 bits (538), Expect = 5.360e-59 Identity = 153/322 (47.52%), Postives = 190/322 (59.01%), Query Frame = 3
Query: 3 ADAYLYGTLSLFGGIVFYKCLDYVVHLMEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADK----AQQQHPHNQ-------TTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
++AYLY +LS FGGI F K LD +VH ++ H DL P +A + + DS +S D + P + N + + SPDL TLNL A K A P + TT+G+ AT D E+ S D +LVRMG++TALAIGLHNFPEG+ATFVATL DP VGGAL XXXXXXXXXXXXCVAIP+YYATG+R KAFGWA +SG+SEPIGAGL W++L +DV+YG GMM+ I L ELIPTA R+DP D + +N ++AGM IMALSLV+F Y
Sbjct: 76 SNAYLYASLSFFGGIAFGKTLDVLVHKLDKSHSH--------DLPDRPE---------EASTTDIEDSQTSYDQTV------------DKPSKTNATLPQA-----VTSPDLTTLNLDKAGKTVAGAGLGSPAGKGSRRGMLTTAGS--ATSLDTEA--TDGTHSKEPKDARLVRMGVLTALAIGLHNFPEGLATFVATLDDPSVGGALXXXXXXXXXXXXXCVAIPIYYATGSRAKAFGWALISGISEPIGAGLGWLVLSAVFSDVLYGXXXXXXAGMMVNICLHELIPTAHRHDPKDTIVSNCLVAGMAIMALSLVLFQY 359
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2RNM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNM0_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.470e-57 Identity = 141/305 (46.23%), Postives = 176/305 (57.70%), Query Frame = 3
Query: 18 YGTLSLFGGIVFYKCLDYVVHLMEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFH 932
Y T FGG++ LD+ VH + GDA H+DV +++ +L + ER A G D A SG + I +G A + L L A K P ++T+ ED ++LVRMGLMTALAIG+HN PEG+ATFV TL DP VG L XXXXXXXXXXXXCVAIP+YYAT +RW+AF WAF+SG+SEPIGAGL W +L + D VYGI+FG+VGGMM+ I + EL+PTA RYDP DR TT S IAGM +MALSL++F
Sbjct: 103 YATACFFGGVIVGNFLDWTVHYINGDANHNDVVLDVDELRRELEEA-EAWERRVAEEGAAKDQ---------------AALSGVELVQGGAPIGSQAGGGAARTDALG--ELETAAK-----PGEESTTPEEDGRTED---------------SQRLVRMGLMTALAIGIHNLPEGLATFVGTLDDPAVGVGLXXXXXXXXXXXXXCVAIPIYYATHDRWQAFKWAFISGISEPIGAGLGWAVLHSIIDDRVYGIVFGLVGGMMVNICIHELLPTAFRYDPGDRFTTKSFIAGMALMALSLILFR 369
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A6H5JKG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG5_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.690e-57 Identity = 143/310 (46.13%), Postives = 182/310 (58.71%), Query Frame = 3
Query: 3 ADAYLYGTLSLFGGIVFYKCLDYVVHLMEGDA-GHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMF 929
ADAYLY TLSLFGG++ Y+ +++VV L+ G A G H+++ + YDL+ +SSS+ A GDS S STI R + +Q +TT GA NA S G + KLV MGL+TA+AIG+HNFP+G+ATFV++L+DP V XXXXXXXXXXX CVA+PVYY TG+R KAFGWA LSG +EPIGA L W+ILKD M+++VYGIL + + +LIPTAVR+DP D+VTTNSI AGM IMALSLV+F
Sbjct: 81 ADAYLYATLSLFGGMLCYRGIEFVVQLLGGGAFGEHNLEFDQYDLN---------------------NSSSNTVTASGDS---------------------SRNSTIK----------REGPRDVEQPQPQETTGGA--------------NAVS--GDEAKLVHMGLLTAVAIGIHNFPDGLATFVSSLADPSVXXXXXXXXXXXXXXXXMCVAMPVYYGTGSRCKAFGWALLSGATEPIGAALGWLILKDVMSELVYGILXXXXXXXXXXVVIHDLIPTAVRFDPADKVTTNSISAGMAIMALSLVLF 322
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2BFN7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFN7_9STRA) HSP 1 Score: 201 bits (510), Expect = 1.050e-54 Identity = 142/309 (45.95%), Postives = 181/309 (58.58%), Query Frame = 3
Query: 9 AYLYGTLSLFGGIVFYKCLDYVVHLMEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEK--LVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMF 929
A+ L F GI LDYVVH +EG G E++ A G + K+H D+ S DA G + AVA+ E E + +GS I S TSG+ ++ + G + A D + LV+MG+MTALAIGLHNFPEG+ATFV TL DP VG XXXXXXXXXXXXCV+IP+YYAT NRW+AF WAF+SG+SEPIGA L WI L + M+D Y ++FG+V GMM+ I + ELIPTAV+YDP D+VT+ S+IAGM++MALSLV+F
Sbjct: 104 AHALAALCFFSGIAVGNLLDYVVHWLEGKDGAASEGAELF---ADAEGTTEKGQCCKSH-----DTESMFDAIDGIKAKHQAVATNEEVAEAGGAPK-DAGSAITVS-----------------------TSGSPNSSDLSGKEGALPMEVGAKDDDRQKALVKMGMMTALAIGLHNFPEGLATFVGTLDDPTVGXXXXXXXXXXXXXXXXCVSIPIYYATKNRWQAFKWAFISGISEPIGAALGWIFLANCMSDSAYAVIFGLVSGMMVNICIHELIPTAVKYDPEDKVTSKSVIAGMLVMALSLVLF 380
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A6U3SFV9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SFV9_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.830e-54 Identity = 139/312 (44.55%), Postives = 181/312 (58.01%), Query Frame = 3
Query: 6 DAYLYGTLSLFGGIVFYKCLDYVVHLMEGDAGHHD---VDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFH 932
DA++Y TL FGG++ +D++V L G+ +H+ ++ DL + + ++ P D G+ A EV R+H ++S T AD A G + V+ G ES+ +KLV+MG+ TA+AIGLHNFPEG+ATFVA L DP VGG L XXXXXXXXXXXXCVA+P+YYATGNR KAFGWA +SG+SEP+ A L W IL + +D +Y +LFG+VGGMM+IIS +EL+PTA RYDP D V T S I GMVIMALSLV+F
Sbjct: 79 DAHIYATLCFFGGVIIMLLIDFLVRLFSGEHHNHNHPSSNVPQQDLSKAEAEKNGLEDASEEEQFAAPHCVGCSDDPVGELREWHEKAEAEV-RDHKQNQTVASVETPGDQNAAGDAGSLSADSASDGF--KDEIDGRTKLAVD-----GFKGLESSH-EHKKLVKMGISTAIAIGLHNFPEGLATFVAALDDPRVGGVLXXXXXXXXXXXXXCVALPIYYATGNRTKAFGWALISGLSEPLAALLGWAILANSFSDTLYAVLFGIVGGMMVIISCKELLPTAHRYDPEDTVVTYSFIGGMVIMALSLVLFQ 381
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2E0S1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E0S1_9STRA) HSP 1 Score: 198 bits (503), Expect = 8.590e-54 Identity = 139/316 (43.99%), Postives = 184/316 (58.23%), Query Frame = 3
Query: 6 DAYLYGTLSLFGGIVFYKCLDYVVHLMEGD---AGHHDVDIEMYDLDASPRGGGTSAERNKAHSG--VVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDE--KLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFH 932
DAY+Y TL FGG+V +D +V G+ HD+ I ++ +A P G + K+ + P D G+ A EV +N + ++SG ++ ++ ++D + N V T P+E KLV+MG+ TA+AIGLHNFPEG+ATFVA L DP VGG L XXXXXXXXXXXXCVA+P+YYATGNR KAF WA +SG+SEPI A L W +L + +D +Y +LFG+VGGMM++IS +EL+PTA RYDP D V T S I+GMVIMALSLV+F
Sbjct: 79 DAYIYATLCFFGGVVVMLLIDVLVRCFSGEHHXXXSHDISIP-HESNAGP---GLKNDDKKSEEAEIIAPHCVGCSDDPVGELQEWHEKAEKEVKEHNNKSVTVASGE-LSGDQNVMEEGASLSDVESKADEFNDEDGPVVDDTP----------------PNEHKKLVKMGISTAIAIGLHNFPEGLATFVAALDDPKVGGVLXXXXXXXXXXXXXCVALPIYYATGNRMKAFCWALISGLSEPIAALLGWAVLANSFSDELYAVLFGLVGGMMVMISCKELLPTAHRYDPDDTVVTYSFISGMVIMALSLVLFQ 373
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: F0Y6B2_AURAN (Cilia- and flagella-associated protein 206 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6B2_AURAN) HSP 1 Score: 209 bits (531), Expect = 1.270e-53 Identity = 146/321 (45.48%), Postives = 186/321 (57.94%), Query Frame = 3
Query: 6 DAYLYGTLSLFGGIVFYKCLDYVVHLMEGD-AGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY*FYGTARGRK 965
DAYL T SLF G++F LD +VH ++ + GH D Y +P S +GD+ A + A G+ +V E+ + A + A+ SGA VE E+ G D+ L RMG+MTALAIG+HNFPEG+ATFVATL DP VGGAL XXXXXXXXXXXXCV+IP+Y+ATG+RWKAF WA LSGVSEP+GA L W++LKD +++YGI+FG+V GMM++I L ELIPTA RYDP D+V T SI AGMV+MA SL +F RG++
Sbjct: 78 DAYLAATASLFAGMLFMSLLDALVHTLDPNHTGHMSSDPARY----------------------IPKS------VEGDAPAASCCAMGD-----DVFDEIEARKRKARAVADEAGAPSQAEGRPNASEDTDAESGAKALEVEAPEAAG----------DKPLERMGVMTALAIGIHNFPEGLATFVATLDDPAVGGALXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEPVGALLGWLLLKDHFNELLYGIVFGMVAGMMVMICLNELIPTAHRYDPQDKVVTKSITAGMVVMAASLCLFDICQGCAGRGQR 355
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2UPI3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPI3_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.240e-53 Identity = 106/153 (69.28%), Postives = 124/153 (81.05%), Query Frame = 3
Query: 477 DEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
D+KLVRMG+ TALAIGLHNFPEG+ATFVA L+DP VG L XXXXXXXXXXXXCVA+P+YYATGNR KAF WA LSG SEP+ A L W +L + +D +Y +LFG VGGMM+IIS++EL+PTA RYDP D V T S I GM IMALSLV+F +
Sbjct: 8 DKKLVRMGINTALAIGLHNFPEGLATFVAALNDPKVGAVLXXXXXXXXXXXXXCVALPIYYATGNRKKAFLWACLSGASEPLAALLGWAVLANSFSDDLYAVLFGFVGGMMVIISVKELLPTAHRYDPEDTVITYSFIVGMFIMALSLVLFVF 160
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A8J2SXP3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXP3_9STRA) HSP 1 Score: 195 bits (495), Expect = 2.870e-53 Identity = 104/153 (67.97%), Postives = 126/153 (82.35%), Query Frame = 3
Query: 477 DEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
D++L MG+MTALAIG+HNFPEG+ATFVATL DP VG + XXXXXXXXXXXXCV+IP+Y+ATG+RWKAF WA LSGVSE +GA L W +LKD +++YGI+FG+V GMM++I L ELIPTA RYDP DRV T SI+AGM +MA SL +F Y
Sbjct: 168 DKRLESMGMMTALAIGIHNFPEGLATFVATLDDPAVGASXXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEIVGALLGWALLKDHFDNLLYGIVFGMVAGMMIMICLNELIPTAHRYDPRDRVVTKSIVAGMAVMAASLCLFVY 320 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61485.13704.1 >prot_H-elongata_contig61485.13704.1 ID=prot_H-elongata_contig61485.13704.1|Name=mRNA_H-elongata_contig61485.13704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp MEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGback to top mRNA from alignment at H-elongata_contig61485:245..2204+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61485.13704.1 ID=mRNA_H-elongata_contig61485.13704.1|Name=mRNA_H-elongata_contig61485.13704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1960bp|location=Sequence derived from alignment at H-elongata_contig61485:245..2204+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61485:245..2204+ >mRNA_H-elongata_contig61485.13704.1 ID=mRNA_H-elongata_contig61485.13704.1|Name=mRNA_H-elongata_contig61485.13704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig61485:245..2204+ (Himanthalia elongata Himel1 dioecious)back to top |