mRNA_H-elongata_contig61485.13704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61485.13704.1
Unique NamemRNA_H-elongata_contig61485.13704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: D8LCW7_ECTSI (Zinc transporter zupT, Zinc transporter ZIP, metal ion transmembrane transporter activity n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCW7_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 7.990e-88
Identity = 192/355 (54.08%), Postives = 224/355 (63.10%), Query Frame = 3
Query:    3 ADAYLYGTLSLFGGIVFYKCLDYVVHLMEGD-AGHHDVDIEMYDLD-------ASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSS-GSTIAPSPDLHTLNLRMADKAQQQHPH---NQTTSGAVQAT-----VEDLESG-GVANAESA--------------------------GGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
            AD+YLY TLSLFGG++ YK +D VVHL+EG     H VDI +YDLD       +SPR    +    K      P    +      +   E        P +HNVV+EL+S GS + PSPDL+TL L MA K Q Q P      T SG   +      V  +E G GV   E A                           G +EKLVRMGL+TA+AIG+HNFPEG+ATFVA LSDP V     XXXXXXXXXXXXCVAIPVYYATGNRWKAFGWA LSGVSEPIGAGL W+ILKD M+++VYG+LFGVV GMM+ I++ ELIPTAVRYDPTD+VTTNSIIAGM IMALSL +F Y
Sbjct:   81 ADSYLYATLSLFGGVLLYKGIDLVVHLLEGGPVRDHHVDISLYDLDGSSGSSESSPRTAPAATADKKKRKKSAPQLGGANSGNNPNDGREP------FPADHNVVVELASRGSAVRPSPDLNTLQLSMAGKVQAQQPSPVSELTPSGGGNSNNKTGVVGFMEEGSGVDQMEEAPSAXXXXXXXAPSGTVQSERGTPAVADGDNEKLVRMGLLTAVAIGIHNFPEGLATFVAALSDPSVXXXXXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDIMSELVYGLLFGVVAGMMVNITIHELIPTAVRYDPTDKVTTNSIIAGMAIMALSLTLFLY 429          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A6V2QEW8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QEW8_HETAK)

HSP 1 Score: 211 bits (538), Expect = 5.360e-59
Identity = 153/322 (47.52%), Postives = 190/322 (59.01%), Query Frame = 3
Query:    3 ADAYLYGTLSLFGGIVFYKCLDYVVHLMEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADK----AQQQHPHNQ-------TTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
            ++AYLY +LS FGGI F K LD +VH ++    H        DL   P          +A +  + DS +S D               + P + N  +  +       SPDL TLNL  A K    A    P  +       TT+G+  AT  D E+       S    D +LVRMG++TALAIGLHNFPEG+ATFVATL DP VGGAL XXXXXXXXXXXXCVAIP+YYATG+R KAFGWA +SG+SEPIGAGL W++L    +DV+YG       GMM+ I L ELIPTA R+DP D + +N ++AGM IMALSLV+F Y
Sbjct:   76 SNAYLYASLSFFGGIAFGKTLDVLVHKLDKSHSH--------DLPDRPE---------EASTTDIEDSQTSYDQTV------------DKPSKTNATLPQA-----VTSPDLTTLNLDKAGKTVAGAGLGSPAGKGSRRGMLTTAGS--ATSLDTEA--TDGTHSKEPKDARLVRMGVLTALAIGLHNFPEGLATFVATLDDPSVGGALXXXXXXXXXXXXXCVAIPIYYATGSRAKAFGWALISGISEPIGAGLGWLVLSAVFSDVLYGXXXXXXAGMMVNICLHELIPTAHRHDPKDTIVSNCLVAGMAIMALSLVLFQY 359          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2RNM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNM0_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.470e-57
Identity = 141/305 (46.23%), Postives = 176/305 (57.70%), Query Frame = 3
Query:   18 YGTLSLFGGIVFYKCLDYVVHLMEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFH 932
            Y T   FGG++    LD+ VH + GDA H+DV +++ +L         + ER  A  G   D                A  SG    +    I   +G   A +  L    L  A K     P  ++T+       ED                ++LVRMGLMTALAIG+HN PEG+ATFV TL DP VG  L XXXXXXXXXXXXCVAIP+YYAT +RW+AF WAF+SG+SEPIGAGL W +L   + D VYGI+FG+VGGMM+ I + EL+PTA RYDP DR TT S IAGM +MALSL++F 
Sbjct:  103 YATACFFGGVIVGNFLDWTVHYINGDANHNDVVLDVDELRRELEEA-EAWERRVAEEGAAKDQ---------------AALSGVELVQGGAPIGSQAGGGAARTDALG--ELETAAK-----PGEESTTPEEDGRTED---------------SQRLVRMGLMTALAIGIHNLPEGLATFVGTLDDPAVGVGLXXXXXXXXXXXXXCVAIPIYYATHDRWQAFKWAFISGISEPIGAGLGWAVLHSIIDDRVYGIVFGLVGGMMVNICIHELLPTAFRYDPGDRFTTKSFIAGMALMALSLILFR 369          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A6H5JKG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG5_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.690e-57
Identity = 143/310 (46.13%), Postives = 182/310 (58.71%), Query Frame = 3
Query:    3 ADAYLYGTLSLFGGIVFYKCLDYVVHLMEGDA-GHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMF 929
            ADAYLY TLSLFGG++ Y+ +++VV L+ G A G H+++ + YDL+                     +SSS+   A GDS                     S  STI           R   +  +Q    +TT GA              NA S  G + KLV MGL+TA+AIG+HNFP+G+ATFV++L+DP V     XXXXXXXXXXX CVA+PVYY TG+R KAFGWA LSG +EPIGA L W+ILKD M+++VYGIL          + + +LIPTAVR+DP D+VTTNSI AGM IMALSLV+F
Sbjct:   81 ADAYLYATLSLFGGMLCYRGIEFVVQLLGGGAFGEHNLEFDQYDLN---------------------NSSSNTVTASGDS---------------------SRNSTIK----------REGPRDVEQPQPQETTGGA--------------NAVS--GDEAKLVHMGLLTAVAIGIHNFPDGLATFVSSLADPSVXXXXXXXXXXXXXXXXMCVAMPVYYGTGSRCKAFGWALLSGATEPIGAALGWLILKDVMSELVYGILXXXXXXXXXXVVIHDLIPTAVRFDPADKVTTNSISAGMAIMALSLVLF 322          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2BFN7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFN7_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.050e-54
Identity = 142/309 (45.95%), Postives = 181/309 (58.58%), Query Frame = 3
Query:    9 AYLYGTLSLFGGIVFYKCLDYVVHLMEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEK--LVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMF 929
            A+    L  F GI     LDYVVH +EG  G      E++   A   G     +  K+H     D+ S  DA  G  +   AVA+ E   E     +  +GS I  S                       TSG+  ++    + G +     A   D +  LV+MG+MTALAIGLHNFPEG+ATFV TL DP VG    XXXXXXXXXXXXCV+IP+YYAT NRW+AF WAF+SG+SEPIGA L WI L + M+D  Y ++FG+V GMM+ I + ELIPTAV+YDP D+VT+ S+IAGM++MALSLV+F
Sbjct:  104 AHALAALCFFSGIAVGNLLDYVVHWLEGKDGAASEGAELF---ADAEGTTEKGQCCKSH-----DTESMFDAIDGIKAKHQAVATNEEVAEAGGAPK-DAGSAITVS-----------------------TSGSPNSSDLSGKEGALPMEVGAKDDDRQKALVKMGMMTALAIGLHNFPEGLATFVGTLDDPTVGXXXXXXXXXXXXXXXXCVSIPIYYATKNRWQAFKWAFISGISEPIGAALGWIFLANCMSDSAYAVIFGLVSGMMVNICIHELIPTAVKYDPEDKVTSKSVIAGMLVMALSLVLF 380          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A6U3SFV9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SFV9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.830e-54
Identity = 139/312 (44.55%), Postives = 181/312 (58.01%), Query Frame = 3
Query:    6 DAYLYGTLSLFGGIVFYKCLDYVVHLMEGDAGHHD---VDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFH 932
            DA++Y TL  FGG++    +D++V L  G+  +H+    ++   DL  +        + ++      P      D   G+       A  EV R+H     ++S  T              AD A           G  +  V+     G    ES+    +KLV+MG+ TA+AIGLHNFPEG+ATFVA L DP VGG L XXXXXXXXXXXXCVA+P+YYATGNR KAFGWA +SG+SEP+ A L W IL +  +D +Y +LFG+VGGMM+IIS +EL+PTA RYDP D V T S I GMVIMALSLV+F 
Sbjct:   79 DAHIYATLCFFGGVIIMLLIDFLVRLFSGEHHNHNHPSSNVPQQDLSKAEAEKNGLEDASEEEQFAAPHCVGCSDDPVGELREWHEKAEAEV-RDHKQNQTVASVETPGDQNAAGDAGSLSADSASDGF--KDEIDGRTKLAVD-----GFKGLESSH-EHKKLVKMGISTAIAIGLHNFPEGLATFVAALDDPRVGGVLXXXXXXXXXXXXXCVALPIYYATGNRTKAFGWALISGLSEPLAALLGWAILANSFSDTLYAVLFGIVGGMMVIISCKELLPTAHRYDPEDTVVTYSFIGGMVIMALSLVLFQ 381          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2E0S1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E0S1_9STRA)

HSP 1 Score: 198 bits (503), Expect = 8.590e-54
Identity = 139/316 (43.99%), Postives = 184/316 (58.23%), Query Frame = 3
Query:    6 DAYLYGTLSLFGGIVFYKCLDYVVHLMEGD---AGHHDVDIEMYDLDASPRGGGTSAERNKAHSG--VVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDE--KLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFH 932
            DAY+Y TL  FGG+V    +D +V    G+      HD+ I  ++ +A P   G   +  K+     + P      D   G+       A  EV   +N  + ++SG  ++   ++      ++D   +    N      V  T                 P+E  KLV+MG+ TA+AIGLHNFPEG+ATFVA L DP VGG L XXXXXXXXXXXXCVA+P+YYATGNR KAF WA +SG+SEPI A L W +L +  +D +Y +LFG+VGGMM++IS +EL+PTA RYDP D V T S I+GMVIMALSLV+F 
Sbjct:   79 DAYIYATLCFFGGVVVMLLIDVLVRCFSGEHHXXXSHDISIP-HESNAGP---GLKNDDKKSEEAEIIAPHCVGCSDDPVGELQEWHEKAEKEVKEHNNKSVTVASGE-LSGDQNVMEEGASLSDVESKADEFNDEDGPVVDDTP----------------PNEHKKLVKMGISTAIAIGLHNFPEGLATFVAALDDPKVGGVLXXXXXXXXXXXXXCVALPIYYATGNRMKAFCWALISGLSEPIAALLGWAVLANSFSDELYAVLFGLVGGMMVMISCKELLPTAHRYDPDDTVVTYSFISGMVIMALSLVLFQ 373          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: F0Y6B2_AURAN (Cilia- and flagella-associated protein 206 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6B2_AURAN)

HSP 1 Score: 209 bits (531), Expect = 1.270e-53
Identity = 146/321 (45.48%), Postives = 186/321 (57.94%), Query Frame = 3
Query:    6 DAYLYGTLSLFGGIVFYKCLDYVVHLMEGD-AGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKGDSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQHPHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY*FYGTARGRK 965
            DAYL  T SLF G++F   LD +VH ++ +  GH   D   Y                      +P S       +GD+ A +  A G+     +V  E+ +    A +          A+            SGA    VE  E+ G          D+ L RMG+MTALAIG+HNFPEG+ATFVATL DP VGGAL XXXXXXXXXXXXCV+IP+Y+ATG+RWKAF WA LSGVSEP+GA L W++LKD   +++YGI+FG+V GMM++I L ELIPTA RYDP D+V T SI AGMV+MA SL +F        RG++
Sbjct:   78 DAYLAATASLFAGMLFMSLLDALVHTLDPNHTGHMSSDPARY----------------------IPKS------VEGDAPAASCCAMGD-----DVFDEIEARKRKARAVADEAGAPSQAEGRPNASEDTDAESGAKALEVEAPEAAG----------DKPLERMGVMTALAIGIHNFPEGLATFVATLDDPAVGGALXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEPVGALLGWLLLKDHFNELLYGIVFGMVAGMMVMICLNELIPTAHRYDPQDKVVTKSITAGMVVMAASLCLFDICQGCAGRGQR 355          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A7S2UPI3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPI3_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.240e-53
Identity = 106/153 (69.28%), Postives = 124/153 (81.05%), Query Frame = 3
Query:  477 DEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
            D+KLVRMG+ TALAIGLHNFPEG+ATFVA L+DP VG  L XXXXXXXXXXXXCVA+P+YYATGNR KAF WA LSG SEP+ A L W +L +  +D +Y +LFG VGGMM+IIS++EL+PTA RYDP D V T S I GM IMALSLV+F +
Sbjct:    8 DKKLVRMGINTALAIGLHNFPEGLATFVAALNDPKVGAVLXXXXXXXXXXXXXCVALPIYYATGNRKKAFLWACLSGASEPLAALLGWAVLANSFSDDLYAVLFGFVGGMMVIISVKELLPTAHRYDPEDTVITYSFIVGMFIMALSLVLFVF 160          
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Match: A0A8J2SXP3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXP3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.870e-53
Identity = 104/153 (67.97%), Postives = 126/153 (82.35%), Query Frame = 3
Query:  477 DEKLVRMGLMTALAIGLHNFPEGIATFVATLSDPVVGGALAXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQELIPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY 935
            D++L  MG+MTALAIG+HNFPEG+ATFVATL DP VG +  XXXXXXXXXXXXCV+IP+Y+ATG+RWKAF WA LSGVSE +GA L W +LKD   +++YGI+FG+V GMM++I L ELIPTA RYDP DRV T SI+AGM +MA SL +F Y
Sbjct:  168 DKRLESMGMMTALAIGIHNFPEGLATFVATLDDPAVGASXXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEIVGALLGWALLKDHFDNLLYGIVFGMVAGMMIMICLNELIPTAHRYDPRDRVVTKSIVAGMAVMAASLCLFVY 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61485.13704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCW7_ECTSI7.990e-8854.08Zinc transporter zupT, Zinc transporter ZIP, metal... [more]
A0A6V2QEW8_HETAK5.360e-5947.52Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2RNM0_9STRA1.470e-5746.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JKG5_9PHAE1.690e-5746.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BFN7_9STRA1.050e-5445.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U3SFV9_9STRA2.830e-5444.55Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2E0S1_9STRA8.590e-5443.99Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
F0Y6B2_AURAN1.270e-5345.48Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A7S2UPI3_9STRA2.240e-5369.28Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8J2SXP3_9STRA2.870e-5367.97Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61485contigH-elongata_contig61485:245..2204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.9
Seed ortholog evalue1.1e-65
Seed eggNOG ortholog2880.D8LCW7
KEGG rclassRC00003,RC00392
KEGG koko:K00545,ko:K07238
KEGG TC2.A.5.5
KEGG ReactionR02534,R02920,R03304,R04301,R04762,R04764,R04881,R04887
KEGG Pathwayko00140,ko00350,ko00965,ko01100,ko04728,map00140,map00350,map00965,map01100,map04728
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
EC2.1.1.6
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size1960
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61485.13704.1prot_H-elongata_contig61485.13704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61485 328..1182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.620784-UTR-H-elongata_contig61485:244..3271622930992.620784-UTR-H-elongata_contig61485:244..327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61485 245..327 +
1691679653.9303257-UTR-H-elongata_contig61485:244..3271691679653.9303257-UTR-H-elongata_contig61485:244..327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61485 245..327 +
1622930992.643718-UTR-H-elongata_contig61485:1182..22041622930992.643718-UTR-H-elongata_contig61485:1182..2204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61485 1183..2204 +
1691679653.9488878-UTR-H-elongata_contig61485:1182..22041691679653.9488878-UTR-H-elongata_contig61485:1182..2204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61485 1183..2204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.6329198-CDS-H-elongata_contig61485:327..11821622930992.6329198-CDS-H-elongata_contig61485:327..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61485 328..1182 +
1691679653.9405773-CDS-H-elongata_contig61485:327..11821691679653.9405773-CDS-H-elongata_contig61485:327..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61485 328..1182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61485.13704.1

>prot_H-elongata_contig61485.13704.1 ID=prot_H-elongata_contig61485.13704.1|Name=mRNA_H-elongata_contig61485.13704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MEGDAGHHDVDIEMYDLDASPRGGGTSAERNKAHSGVVPDSSSSRDAAKG
DSSAEAAVASGEVPREHNVVIELSSGSTIAPSPDLHTLNLRMADKAQQQH
PHNQTTSGAVQATVEDLESGGVANAESAGGPDEKLVRMGLMTALAIGLHN
FPEGIATFVATLSDPVVGGALAVAIAIHNIPEGLCVAIPVYYATGNRWKA
FGWAFLSGVSEPIGAGLAWIILKDKMTDVVYGILFGVVGGMMLIISLQEL
IPTAVRYDPTDRVTTNSIIAGMVIMALSLVMFHY*
back to top

mRNA from alignment at H-elongata_contig61485:245..2204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61485.13704.1 ID=mRNA_H-elongata_contig61485.13704.1|Name=mRNA_H-elongata_contig61485.13704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1960bp|location=Sequence derived from alignment at H-elongata_contig61485:245..2204+ (Himanthalia elongata Himel1 dioecious)
AGGCCGACGCCTACCTGTACGGAACGCTCAGCCTTTTCGGGGGCATCGTT TTCTACAAATGCCTTGATTACGTTGTTCATCTCATGGAGGGAGACGCTGG CCACCACGACGTTGATATCGAAATGTATGATCTCGATGCAAGTCCCCGGG GTGGCGGGACTTCAGCCGAGCGCAACAAGGCTCACAGTGGGGTGGTACCC GACTCATCTTCATCGAGAGATGCTGCGAAGGGTGACTCCTCTGCTGAGGC GGCCGTCGCCTCCGGGGAGGTCCCGCGGGAGCACAATGTAGTGATCGAGC TCAGCTCCGGGTCCACCATTGCGCCATCGCCCGACCTCCACACACTAAAC CTCCGCATGGCCGACAAGGCCCAGCAACAGCATCCGCACAATCAAACGAC TTCGGGAGCAGTTCAGGCAACGGTCGAGGATTTGGAAAGTGGAGGCGTGG CTAATGCGGAATCAGCGGGTGGGCCTGATGAAAAACTCGTGCGTATGGGG CTGATGACCGCGCTTGCGATTGGGCTCCACAACTTCCCGGAAGGGATAGC GACGTTCGTGGCGACGCTTTCCGATCCGGTGGTGGGCGGTGCCCTCGCTG TTGCCATCGCTATCCACAACATCCCCGAAGGTTTGTGCGTGGCTATCCCA GTATACTATGCGACAGGCAACCGCTGGAAGGCGTTCGGATGGGCGTTCCT GTCCGGCGTAAGTGAGCCCATCGGGGCCGGCCTCGCGTGGATAATTCTGA AGGATAAAATGACCGATGTGGTATACGGCATCTTGTTCGGTGTAGTTGGA GGCATGATGTTGATCATCTCACTCCAGGAGCTTATCCCCACCGCCGTCCG GTATGACCCTACCGACAGGGTCACCACGAACTCAATCATTGCTGGAATGG TAATCATGGCCCTGAGCCTCGTCATGTTCCATTACTGATTTTATGGCACC GCGAGAGGTCGGAAGAAGTGATGCGACGGCGGTTGTCAGCTTAGGAATTT AAGCAATGTTTGGATGCCCCTGCCGTCCGCAGCCTAGCTTTTTGGCTAAG CGTCTGGACTCTGGGGAGAGAGGGCAAGGTCAGGGGTGGTAAATTGGTTA GAGTATGGCATGCATGGTGTGCGGGAGCAACATGTTCACGCAAGCGACGA TGTACATAGAGCGAAGTCGTGATTTGGTAACACTCGACTCGAGCTGGCTG GGCGTGGTAACGAAGTAGCCCTGCGAAAACGGGCTGTGATACGTGGCAAG GGGACATGCGTCGTTTGATTTGGAGCGGCTAGCCAGTTTTCACGTAAGTT CGGTGTATTGAAGTCTCTCGCGCGTATATGGGCGCATTAAAAGGCAAAAT CGTCTAATGGCCGTGCTTTGCATCTCGAGTTGCTCTGCTGTTTTTGACAA CTCTCTATAGTGCAAAAGTGGTCGGCTTCACCGTTTGCGATTCTTCTACA CGTAGGATGTACGATAGTTTACTCATCATACGTACATATCTGTTTATATT ACACCATGACATGCTGAGCTCTTCGTAGATCGAACGGGTCGGTAGTTGGA TTCGTCGTCTGATTGGGGCGAGTAATCGGGGTTGACATATTTTCAATTGC TTGAATAAACTATCACTTCTTCAAACCGGTCAAATAATCTAAAGACTGGG GGAACGGGACGTAACATAACTGTCCCCGCTTTTCGGAGGGCAGGTTCCAA ATTCATCCTCATCCGGGGATCCAATCGTCGTATCCCTGGTCGTAGCACTT CAGATGTAATACCTGATTACAATAAAAGCAGGGACGGATATGGTTTATAT CCAGGAGGGGAAGAATTTAACATGTCCCCTCCCCGAACCAGGGGCATTTT AGCAAGTTCTCCCTTCCTCCTATCCTTGGATTACTCTCAAAACCGTTTTG TAGAGACGGTATCTTAAAGGGACTATGTTTCTTGAACTTGCGGGTCTATC GATTGCGACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61485:245..2204+

>mRNA_H-elongata_contig61485.13704.1 ID=mRNA_H-elongata_contig61485.13704.1|Name=mRNA_H-elongata_contig61485.13704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig61485:245..2204+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGAGACGCTGGCCACCACGACGTTGATATCGAAATGTATGATCT
CGATGCAAGTCCCCGGGGTGGCGGGACTTCAGCCGAGCGCAACAAGGCTC
ACAGTGGGGTGGTACCCGACTCATCTTCATCGAGAGATGCTGCGAAGGGT
GACTCCTCTGCTGAGGCGGCCGTCGCCTCCGGGGAGGTCCCGCGGGAGCA
CAATGTAGTGATCGAGCTCAGCTCCGGGTCCACCATTGCGCCATCGCCCG
ACCTCCACACACTAAACCTCCGCATGGCCGACAAGGCCCAGCAACAGCAT
CCGCACAATCAAACGACTTCGGGAGCAGTTCAGGCAACGGTCGAGGATTT
GGAAAGTGGAGGCGTGGCTAATGCGGAATCAGCGGGTGGGCCTGATGAAA
AACTCGTGCGTATGGGGCTGATGACCGCGCTTGCGATTGGGCTCCACAAC
TTCCCGGAAGGGATAGCGACGTTCGTGGCGACGCTTTCCGATCCGGTGGT
GGGCGGTGCCCTCGCTGTTGCCATCGCTATCCACAACATCCCCGAAGGTT
TGTGCGTGGCTATCCCAGTATACTATGCGACAGGCAACCGCTGGAAGGCG
TTCGGATGGGCGTTCCTGTCCGGCGTAAGTGAGCCCATCGGGGCCGGCCT
CGCGTGGATAATTCTGAAGGATAAAATGACCGATGTGGTATACGGCATCT
TGTTCGGTGTAGTTGGAGGCATGATGTTGATCATCTCACTCCAGGAGCTT
ATCCCCACCGCCGTCCGGTATGACCCTACCGACAGGGTCACCACGAACTC
AATCATTGCTGGAATGGTAATCATGGCCCTGAGCCTCGTCATGTTCCATT
ACTGAATGGAGGGAGACGCTGGCCACCACGACGTTGATATCGAAATGTAT
GATCTCGATGCAAGTCCCCGGGGTGGCGGGACTTCAGCCGAGCGCAACAA
GGCTCACAGTGGGGTGGTACCCGACTCATCTTCATCGAGAGATGCTGCGA
AGGGTGACTCCTCTGCTGAGGCGGCCGTCGCCTCCGGGGAGGTCCCGCGG
GAGCACAATGTAGTGATCGAGCTCAGCTCCGGGTCCACCATTGCGCCATC
GCCCGACCTCCACACACTAAACCTCCGCATGGCCGACAAGGCCCAGCAAC
AGCATCCGCACAATCAAACGACTTCGGGAGCAGTTCAGGCAACGGTCGAG
GATTTGGAAAGTGGAGGCGTGGCTAATGCGGAATCAGCGGGTGGGCCTGA
TGAAAAACTCGTGCGTATGGGGCTGATGACCGCGCTTGCGATTGGGCTCC
ACAACTTCCCGGAAGGGATAGCGACGTTCGTGGCGACGCTTTCCGATCCG
GTGGTGGGCGGTGCCCTCGCTGTTGCCATCGCTATCCACAACATCCCCGA
AGGTTTGTGCGTGGCTATCCCAGTATACTATGCGACAGGCAACCGCTGGA
AGGCGTTCGGATGGGCGTTCCTGTCCGGCGTAAGTGAGCCCATCGGGGCC
GGCCTCGCGTGGATAATTCTGAAGGATAAAATGACCGATGTGGTATACGG
CATCTTGTTCGGTGTAGTTGGAGGCATGATGTTGATCATCTCACTCCAGG
AGCTTATCCCCACCGCCGTCCGGTATGACCCTACCGACAGGGTCACCACG
AACTCAATCATTGCTGGAATGGTAATCATGGCCCTGAGCCTCGTCATGTT
CCATTACTGA
back to top