prot_H-elongata_contig6135.13688.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6135.13688.1
Unique Nameprot_H-elongata_contig6135.13688.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length573
Homology
BLAST of mRNA_H-elongata_contig6135.13688.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 9.760e-125
Identity = 201/325 (61.85%), Postives = 244/325 (75.08%), Query Frame = 0
Query:  141 GTTRLEGLSADEVEERLIAAGVLHRDGAV--FDADSLSDEGVYNTVDVPDGYEACRILVDSLGFEKAEIDYLRNRYAPLRGEPWYRREPTPG-SKVGKKVLDVFFLEETLPELLELLLGNE-ENDGVGLSAEQVRGMILRTPAVAGVEALDAGDVVSYLRDELGLNEAGQLASALAGCPPILMYNAQSNLQKK-----------VQYYVDALSWTIEDIRFLLAEYPNLLSIKMENDVIEVVEYLRYEIGLQPAMVRDMIRKHPQILEVRPKRLRAVVKYLWKVLEIPWNDVVDILSQNPRMCSLEAEANLAPLRHFFERELFVE 450
            G   LEGLSADEVE+RLIAAG+L  DGA   F+ D     GVYN ++V DG EAC+IL + LGF++  I +LR++Y PLRGE WYRREP  G SK GKK LDV+F+EETLP+LL+LLLG E E  GVGL  +QVR M+  TP++ G++  DA DV  YLR ELGL+  GQLASALAGCPP+LMY+   NL+ K           V YY ++L+WT ED+  +LAEYPNLLSIKMENDVIEV++YLR E+GLQP  V  M+R+ PQ+LEVRPKRL+AVV+Y WKVLEIP + +  +LSQ+PR C LEAEANLAPLR FFERELFVE
Sbjct:  149 GVGSLEGLSADEVEQRLIAAGILRGDGAEIDFEEDDGGGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGVGLDRKQVREMLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVE 473          
BLAST of mRNA_H-elongata_contig6135.13688.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 3.930e-105
Identity = 204/400 (51.00%), Postives = 237/400 (59.25%), Query Frame = 0
Query:  145 LEGLSADEVEERLIAAGVLHRDGAV--FDADSLSDEGVYNTVDVPDGYEACRILVDSLGFEKAEIDYLRNRYAPLRGEPWYRREPTPG-SKVGKKVLDVFFLEETLPELLELLLGNE-ENDGVGLSAEQVRGMILRTPAVAGVEALDAGDVVSYLRDELGLNEAGQLASALAGCPPILMYNAQSNLQKKVQYYVDALSWTIEDIRFLLAEYPNLLSIKMENDVIEVVEYLRYEIGLQPAMVRDMIRKHPQILEVRPKRLRAVVKY------------------LWKVLEIPWNDVVDILSQNPRMCSLEAEANLAPLRHFFERELFVEDTARIGRLVCKFPRLLFQDVETQLTPRAEEFREAMGFVGVEPLPRRVRHRPKLDS------CRVGDVGFDYG 516
            LEGLSADEVE RLIAAG+L  DGA   FD D   + GVYN ++V DG EACRIL + LGF++  I YLR++Y PLRGE WYRREP  G SK GKK LDV+F+EETLP+LL+LLLG E E  G+GL  +Q RG     PA +       GDV                                      V YY +AL+WT ED+  +LAEYPNLLSIKMENDVIEV++                        EVRPKRL+AVV+                   L  VLEIP + +  +LSQ+PR C LEAEANLAPLR FFERELFVEDT+RIG LV KFPRLLFQDV+TQL PRAEEFR+AMG  G+EPLP RVR RPK          R  + GF  G
Sbjct:  229 LEGLSADEVERRLIAAGILRGDGAEIDFDEDDDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGIGLDRKQARG-----PADSSHSEQFWGDV-----------------------------------DADVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVIDXXXXXXXXXXXXXXXXXXXXXXXXEVRPKRLKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPKRSKFSGAGRARGANSGFREG 588          
BLAST of mRNA_H-elongata_contig6135.13688.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.080e-51
Identity = 133/410 (32.44%), Postives = 197/410 (48.05%), Query Frame = 0
Query:  154 EERLIAAGVLHRDGAVFDADSLSDEGVYNTVDVPDGYEACRILVDSLGFEKAEIDYLRNRYAPLRGEPWYRREPTPGSKVGKKVLDVFFLEETLPELLELLLGNEENDGVGLSAEQVRGMILRTPAVAGVEALDAGDVVSYLRDELGLNEAGQLASALAGCPPILMYNAQSNLQKKVQYYVDALSWTIEDIRFLLAEYPNLLSIKMENDVIEVVEYLRY--EIGLQPAMVRDMIRKHPQIL-EVRPKRLRAVVKYLWK------------------------------------VLEIPWNDVVDILSQNPRMCSLEAEANLAPLRHFFERELFVEDTARIGRLVCKFPRLLFQDVETQLTPRAEEFREAMGFVGVEPLPRRVRHRPKLDSCRVGDVGFDYGSRGRTSAS 524
            EE LIA  V            L D       D   G EA R L++ +G   A +  L  R+APLRGE WYRR      + GKKVLDV+FLE+TLP+L+ELL   EE   +G S E++       P++ G EA +    + Y+R E    E G+L  AL+ CP +L+Y+A++NL+ K  Y    L  T   +R L+ +YP +  +    +    +  L    + G+   M   ++   P+++ E + KR++A++ YL K                                    VL++       ++  +PR+  +EAE +LAPLRHFFE +L + DT RIG +V K P++LF D+ET+L P+A + R  +G       PR    RP     R        G R  TSA+
Sbjct:   38 EEELIAEDV-----------ELIDAEAGELADFDGGAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR------RNGKKVLDVYFLEDTLPDLVELLEAPEE---LGWSQEEMAAAFAVVPSLLGREAAEVAASLRYVR-EXXXXEGGELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGEGKSSIASLDVLLDSGMTTHMACQLVVAEPELVAEAKGKRVKALMHYLQKWRRLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGIPDDAAPPRPRAPRPTRAEQRA------MGPRRPTSAA 420          
BLAST of mRNA_H-elongata_contig6135.13688.1 vs. uniprot
Match: A0A7S1FZA0_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZA0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.540e-7
Identity = 39/172 (22.67%), Postives = 84/172 (48.84%), Query Frame = 0
Query:  320 YNAQSNLQKKVQYYVDALSWTIEDIRFLLAEYPNLLSIKMENDVIEVVEYLRYEIGLQPAMVRDMIRKHPQILEVRPKRLRAVVKYLWKVLEIPWNDVVDILSQNPRMCSLEAEANLAPLRHFFERELFVEDTARIGRLVCKFPRLLFQDVETQLTPRAEEFREAMGFVGVE 491
            Y+   N+ + +Q  V       ED   ++  YP+ L +     V+ V+ +L +E+GL  + +R +++  P +L +    ++  +++L   L I  +++  I+   P + +L+ E  + P+  F  + + +E+   +GR V + P +L   VE +L P+     +  G+   E
Sbjct:  455 YSKMGNVAQTLQKVVSQ-----EDFHKIIVSYPDALMLDPSTQVLPVINFLHFEVGLVASDIRRVLQSFPTVLGIPVLNMKERIQFL-DSLGIHGDNLCKIIRAFPHIMTLDVETRMMPVVEFL-KSIGIEN---VGRFVSRLPPVLGYSVENELLPKWTYLTKTCGYANFE 616          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6135.13688.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVI5_ECTSI9.760e-12561.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV1_9PHAE3.930e-10551.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN67_9STRA3.080e-5132.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1FZA0_9STRA2.540e-722.67Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 382..413
e-value: 0.7
score: 18.9
coord: 345..377
e-value: 0.046
score: 22.9
coord: 418..449
e-value: 740.0
score: 4.9
coord: 456..488
e-value: 0.0062
score: 25.8
coord: 271..302
e-value: 2700.0
score: 0.5
coord: 308..340
e-value: 6.3
score: 15.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 264..487
e-value: 1.4E-15
score: 57.0
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 258..419
e-value: 1.3E-19
score: 72.4
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 366..438
coord: 272..363

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6135contigH-elongata_contig6135:2622..7987 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6135.13688.1mRNA_H-elongata_contig6135.13688.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6135 2607..8821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6135.13688.1 ID=prot_H-elongata_contig6135.13688.1|Name=mRNA_H-elongata_contig6135.13688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=573bp
MAFTFEADRIDEECAYKRDSANRFSAEGPFRVHNGNKERGDGDKSVEARD
LGVTSDGVTIEAPPIPPHTQPRGECTGTGMESSVSENQELADYYFSRVSA
TNESTQERGYSESPARKDSDADISRVAVNSGLTEMAARGQGTTRLEGLSA
DEVEERLIAAGVLHRDGAVFDADSLSDEGVYNTVDVPDGYEACRILVDSL
GFEKAEIDYLRNRYAPLRGEPWYRREPTPGSKVGKKVLDVFFLEETLPEL
LELLLGNEENDGVGLSAEQVRGMILRTPAVAGVEALDAGDVVSYLRDELG
LNEAGQLASALAGCPPILMYNAQSNLQKKVQYYVDALSWTIEDIRFLLAE
YPNLLSIKMENDVIEVVEYLRYEIGLQPAMVRDMIRKHPQILEVRPKRLR
AVVKYLWKVLEIPWNDVVDILSQNPRMCSLEAEANLAPLRHFFERELFVE
DTARIGRLVCKFPRLLFQDVETQLTPRAEEFREAMGFVGVEPLPRRVRHR
PKLDSCRVGDVGFDYGSRGRTSASETKTKGQHKGGFVEGKDGSRIGVDYR
GQSDGIRRRSRGRGRGRGGRSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf