prot_H-elongata_contig61280.13676.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61280.13676.1
Unique Nameprot_H-elongata_contig61280.13676.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A2P6RES3_ROSCH (Putative transcription factor WD40-like family n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RES3_ROSCH)

HSP 1 Score: 89.0 bits (219), Expect = 6.300e-20
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 65
            R+A++W+ E G  + T  GH  RLARI FHPSG+YLGT SFD TWRLWD+E GEELLLQ  +  S
Sbjct:   90 RTARLWNSE-GAHLMTFGGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRS 153          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.840e-20
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    4 KVWDC--ESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 59
            KV  C   +G+C+QTL GHA RLAR+ FHP GRY+GTAS+DHTWRLWD+E G +LLLQ
Sbjct:  294 KVGACVVHAGKCLQTLTGHADRLARVEFHPCGRYVGTASYDHTWRLWDVETGAQLLLQ 351          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: UPI00053B0164 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B0164)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 59
            R+AK+W  + G  VQT +GH  RLAR+ FHPSGRYLGT SFD TWRLWDI  G ELLLQ
Sbjct:  211 RTAKLWKTD-GTLVQTFEGHLDRLARVAFHPSGRYLGTTSFDKTWRLWDINTGAELLLQ 268          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A6A4LZK8_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LZK8_9ERIC)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-18
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    3 AKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 59
            A++W+ E G  + T +GH  RLARI FHPSG+YLGT S+D TWRLWDI+ GEELLLQ
Sbjct:  142 ARLWNTE-GSLLNTFEGHLDRLARIAFHPSGKYLGTTSYDKTWRLWDIDTGEELLLQ 197          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A1Y1HKQ5_KLENI (U4/U6 small nuclear ribonucleoprotein PRP4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKQ5_KLENI)

HSP 1 Score: 86.7 bits (213), Expect = 3.060e-18
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 59
            R+AK+W+ +  E V+T  GH  RLARI FHPSGRYLGTASFD TWRLW +E G E+LLQ
Sbjct:  338 RTAKLWNLKGKE-VRTFSGHLDRLARIAFHPSGRYLGTASFDKTWRLWHLETGVEMLLQ 395          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: D7L994_ARALL (Uncharacterized protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7L994_ARALL)

HSP 1 Score: 85.5 bits (210), Expect = 3.500e-18
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 65
            R+AK+W+ + G  +QT +GH  RLARI FHPSG+YLGT SFD TWRLWDI  G E+L Q  +  S
Sbjct:  105 RTAKLWNID-GTLLQTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDINTGIEILSQGGHSRS 168          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: UPI000A29D665 (LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29D665)

HSP 1 Score: 85.5 bits (210), Expect = 4.210e-18
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 65
            R+AK+W+ + G  +QT +GH  RLARI FHPSG+YLGT SFD TWRLWDI  G E+L Q  +  S
Sbjct:  126 RTAKLWNID-GTLLQTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDINTGIEILSQGGHSRS 189          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A072V5R5_MEDTR (U4/U6 small nuclear ribonucleoprotein PRP4 n=6 Tax=IRL clade TaxID=2233839 RepID=A0A072V5R5_MEDTR)

HSP 1 Score: 85.9 bits (211), Expect = 5.560e-18
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQ 59
            R+AK W+ + G  + T +GH  RLARI FHPSG+YLGTAS+D TWRLWD+E  EELLLQ
Sbjct:  337 RTAKYWN-DQGALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQ 394          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: B9SVT1_RICCO (U4/U6 small nuclear ribonucleoprotein Prp4, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9SVT1_RICCO)

HSP 1 Score: 85.5 bits (210), Expect = 7.720e-18
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0
Query:    1 RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASNRDS 65
            R+AK+W+ + G  + T  GH  RLARI FHPSG+YLGT SFD TWRLWD++ G ELLLQ  +  S
Sbjct:  314 RTAKLWNTD-GLVLGTFHGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVDTGAELLLQEGHSRS 377          
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Match: A0A438DKL7_VITVI (U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DKL7_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 1.910e-17
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0
Query:   14 VQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDIERGEELLLQASN 62
            ++T +GH  RLARI FHPSG+YLGTASFD TWRLWD+E GEELLLQ  +
Sbjct:  331 LKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGS 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61280.13676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6RES3_ROSCH6.300e-2061.54Putative transcription factor WD40-like family n=1... [more]
A0A835YL38_9STRA9.840e-2067.24Quinon protein alcohol dehydrogenase-like superfam... [more]
UPI00053B01641.920e-1967.80U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
A0A6A4LZK8_9ERIC1.030e-1864.91Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
A0A1Y1HKQ5_KLENI3.060e-1866.10U4/U6 small nuclear ribonucleoprotein PRP4 n=1 Tax... [more]
D7L994_ARALL3.500e-1858.46Uncharacterized protein n=1 Tax=Arabidopsis lyrata... [more]
UPI000A29D6654.210e-1858.46LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucle... [more]
A0A072V5R5_MEDTR5.560e-1864.41U4/U6 small nuclear ribonucleoprotein PRP4 n=6 Tax... [more]
B9SVT1_RICCO7.720e-1858.46U4/U6 small nuclear ribonucleoprotein Prp4, putati... [more]
A0A438DKL7_VITVI1.910e-1771.43U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 10..49
e-value: 1.7E-8
score: 44.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 11..49
e-value: 5.4E-6
score: 27.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 17..58
score: 14.151
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..68
e-value: 3.9E-18
score: 67.3
NoneNo IPR availablePANTHERPTHR19846WD40 REPEAT PROTEINcoord: 1..61
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 36..50
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..58
score: 17.772
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61280contigH-elongata_contig61280:1601..1810 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61280.13676.1mRNA_H-elongata_contig61280.13676.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61280 1601..1810 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61280.13676.1 ID=prot_H-elongata_contig61280.13676.1|Name=mRNA_H-elongata_contig61280.13676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
RSAKVWDCESGECVQTLQGHAGRLARIGFHPSGRYLGTASFDHTWRLWDI
ERGEELLLQASNRDSKGGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf