mRNA_H-elongata_contig61208.13667.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61208.13667.1
Unique NamemRNA_H-elongata_contig61208.13667.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.550e-30
Identity = 61/93 (65.59%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:   22 YLPTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            Y PT Q++S+K+++ AG  DR+RLVLSDGQHF+QSMLATQQNE+I+SG+L+EL +ITL+DYIVN VQNKRLII+L+L++ +GP P K+G+P+N
Sbjct:   23 YNPTVQVVSLKKMTNAGT-DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAP-KIGDPIN 113
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.910e-27
Identity = 53/74 (71.62%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:   79 DRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            DR+RLVLSDGQHF+QSMLATQQNE+I+SG+L+EL +ITL+DYIVN VQNKRLII+L+L++ +GP P K+G+P+N
Sbjct:    7 DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPIN 79
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 102 bits (254), Expect = 2.920e-23
Identity = 51/91 (56.04%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   28 PTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            PT Q+I++K+V GAGA DRFRL++SDGQ+++Q MLATQ N L++S  LQEL ++ LT+Y+VN VQ +R++I L +E+ +GP P KVG+P N
Sbjct:   22 PTLQVINVKKVQGAGA-DRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVP-KVGDPQN 110
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: J6EY43_TRIAS (Replication protein A subunit n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6EY43_TRIAS)

HSP 1 Score: 92.0 bits (227), Expect = 6.690e-20
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:   28 PTSQLISIKRV----SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            P  Q++S+KR+    SGA A DR+R++LSDG++F QSMLATQ N L+ +  L++ +VI LT +++NTVQN++LII+L LE Q      KVGNPVN
Sbjct:   25 PVLQVLSVKRINSPASGAQATDRYRVILSDGEYFIQSMLATQLNHLVENDELEKNTVIKLTSFVINTVQNRKLIIILALERQNW-NGQKVGNPVN 118
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S3FDD9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FDD9_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 8.150e-20
Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   31 TSQLISIKRV--SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNP 294
            T QL+ IK++  SG GA+DR+RLV+SDGQ + Q+MLATQ N L+ SG +Q+ SV+ L +Y+ N VQN+++II+L + +  G    ++G+P
Sbjct:   21 TLQLLDIKKINASGPGAMDRYRLVISDGQFYMQAMLATQLNSLVESGQVQQFSVVMLEEYLCNMVQNRKIIIILNMRVM-GAHGTQIGSP 109
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: K1VBR7_TRIAC (Replication protein A subunit n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1VBR7_TRIAC)

HSP 1 Score: 92.0 bits (227), Expect = 1.300e-19
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:   28 PTSQLISIKRV----SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            P  Q++S+KR+    SGA A DR+R++LSDG++F QSMLATQ N L+ +  L++ +VI LT +++NTVQN++LII+L LE Q      KVGNPVN
Sbjct:   25 PVLQVLSVKRINSPASGAQATDRYRVILSDGEYFIQSMLATQLNHLVENDELEKNTVIKLTSFVINTVQNRKLIIILALERQNW-NGQKVGNPVN 118
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S0RMN9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RMN9_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 5.020e-19
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:   28 PTSQLISIKRV-SGA-GAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNP 294
            P  Q I  KR+ +GA GAV+R+RL++SDG H+SQ+MLATQ N+LIT+  +Q  SV+ L +YIVN VQN+R+II L +E   G  P K+GNP
Sbjct:   64 PIVQCIDSKRIGNGAQGAVERYRLIISDGVHWSQAMLATQLNDLITTNQIQLHSVLRLNEYIVNNVQNRRIIIALGIE-PIGMSPVKLGNP 153
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A317XXN4_9BASI (Replication protein A subunit n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XXN4_9BASI)

HSP 1 Score: 87.8 bits (216), Expect = 4.030e-18
Identity = 38/96 (39.58%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   28 PTSQLISIKRV-----SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            P  Q++SIK++     + A   DR+R++LSDG H++Q+MLA+Q+  ++ SG L++  ++ +  Y  N+VQN+R++I+L L++ +GP P ++GNP+N
Sbjct:   27 PVCQILSIKKIQATSTTAANVGDRYRIILSDGVHYAQAMLASQKRTMVESGELEKNCIVKVLQYAANSVQNRRILILLDLQVLSGPAPDRLGNPIN 122
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S3LLC6_9STRA (Replication protein A subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLC6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.510e-18
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   25 LPTSQLISIKRV---SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 300
            +P  Q+I IK++   + AGA +RFRL++SDGQHF ++ML+TQ N+L+ +  L   S++TL +YI N VQ +R++I+L L+I      AK+GNPVN
Sbjct:   19 VPVVQVIDIKKIESSTAAGAKERFRLIVSDGQHFQKAMLSTQLNDLVKTQQLVTNSIVTLQEYICNEVQGRRIVIILGLQINQ-TNSAKIGNPVN 112
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BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A8H7QB53_9FUNG (Replication protein A subunit n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7QB53_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 2.730e-17
Identity = 42/98 (42.86%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:   10 SLVHYLPTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQA-GPQPAKVGNPVN 300
            S ++  P  Q+I+IK+V  +  V+R+R+++SDG +F Q+MLA+Q   L+ +  LQ+ S+I L DY+ NT+QN+++II L +E+   GP   ++GNPVN
Sbjct:   19 SALYKNPVVQVINIKKVPTSNNVNRYRVIISDGTYFMQAMLASQHTALVENETLQKYSLIVLKDYVCNTLQNRKIIIALNIEVLPNGPDMHRIGNPVN 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE2.550e-3065.59Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU2_ECTSI1.910e-2771.62Rep-A_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XQ94_HETAK2.920e-2356.04Replication protein A subunit n=1 Tax=Heterosigma ... [more]
J6EY43_TRIAS6.690e-2052.63Replication protein A subunit n=1 Tax=Trichosporon... [more]
A0A7S3FDD9_9EUKA8.150e-2047.78Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
K1VBR7_TRIAC1.300e-1952.63Replication protein A subunit n=1 Tax=Trichosporon... [more]
A0A7S0RMN9_9CHLO5.020e-1954.95Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A317XXN4_9BASI4.030e-1839.58Replication protein A subunit n=1 Tax=Testicularia... [more]
A0A7S3LLC6_9STRA7.510e-1847.37Replication protein A subunit n=1 Tax=Aplanochytri... [more]
A0A8H7QB53_9FUNG2.730e-1742.86Replication protein A subunit n=1 Tax=Umbelopsis v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61208contigH-elongata_contig61208:215..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog2880.D7FUU2
Preferred nameRFA1
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006278,GO:0006279,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007063,GO:0007088,GO:0007127,GO:0007129,GO:0007131,GO:0007140,GO:0007141,GO:0007275,GO:0007276,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010833,GO:0010948,GO:0016043,GO:0016567,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030491,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032392,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045132,GO:0045143,GO:0045184,GO:0045786,GO:0045839,GO:0045875,GO:0045930,GO:0045935,GO:0046483,GO:0048229,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051026,GO:0051052,GO:0051054,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070192,GO:0070647,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0071922,GO:0071923,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0098813,GO:0098847,GO:0106111,GO:0106112,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902969,GO:1903046,GO:1903047,GO:1903827,GO:1903828,GO:1904356,GO:1904358,GO:1905405,GO:1905412,GO:1905634,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.DNA recombination
EggNOG OGsCOG1599@1,KOG0851@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_001110.1
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.578052-CDS-H-elongata_contig61208:214..2841622930987.578052-CDS-H-elongata_contig61208:214..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61208 215..284 -
1691679652.0341787-CDS-H-elongata_contig61208:214..2841691679652.0341787-CDS-H-elongata_contig61208:214..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61208 215..284 -
1622930987.5908744-CDS-H-elongata_contig61208:714..9441622930987.5908744-CDS-H-elongata_contig61208:714..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61208 715..944 -
1691679652.0470455-CDS-H-elongata_contig61208:714..9441691679652.0470455-CDS-H-elongata_contig61208:714..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61208 715..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61208.13667.1prot_H-elongata_contig61208.13667.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61208 215..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61208.13667.1

>prot_H-elongata_contig61208.13667.1 ID=prot_H-elongata_contig61208.13667.1|Name=mRNA_H-elongata_contig61208.13667.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MGFSLVHYLPTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNE
LITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN
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mRNA from alignment at H-elongata_contig61208:215..944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61208.13667.1 ID=mRNA_H-elongata_contig61208.13667.1|Name=mRNA_H-elongata_contig61208.13667.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=730bp|location=Sequence derived from alignment at H-elongata_contig61208:215..944- (Himanthalia elongata Himel1 dioecious)
ATGGGTTTCTCTCTGGTACATTATCTGCCTACCTCACAGCTGATCAGCAT
CAAGAGAGTGAGCGGCGCCGGTGCCGTCGACCGGTTTCGACTGGTGCTCT
CGGACGGACAACACTTTTCACAGTCCATGCTCGCGACGCAGCAAAACGAG
CTGATTACCAGCGGGAACCTGCAGGAGCTCAGCGTAATCACGCTGACAGA
CTACATCGTCAACACCGTGCAGAACAAGAGGTGTGGTCAGAAAAACGCTT
TTTATTTTTAAACAGGGATTCAAGATAGAAGTACGCGGCAGCCGCAAGGT
ATAAAATCGCCTGTCTTAACAACCAACGTCGGTATTGGCTTGAGGGGTCA
TTTCGTAACGCGCCCCGCCTTTTTGCATGTACCGAGGATATAATATATTA
TAATTAAAAACACTGCAAAATCGTCTATGACTATGCGTAAACATCGTATG
GCAAGGCTAACTCATGGAGGCGTCCTTTGCAAAAGCATCCACCGCCGTGA
TTCTACTTATCCCGCGTTACGCCAGGGCCACATATTGGTCGCATGTCACG
TCACCCTGTGCTGTTTGTTCTATGTGAACCACTTGAGATGATAGCGCCAT
CCATCCGCCTTCGCTGGAAAATGACGTTTTCATGCCCACGGGACCCTGAA
TCTCCTCTAGGCTCATCATCGTGCTTCAGCTTGAGATCCAGGCGGGGCCG
CAGCCGGCCAAGGTAGGAAACCCCGTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig61208:215..944-

>mRNA_H-elongata_contig61208.13667.1 ID=mRNA_H-elongata_contig61208.13667.1|Name=mRNA_H-elongata_contig61208.13667.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig61208:215..944- (Himanthalia elongata Himel1 dioecious)
ATGGGTTTCTCTCTGGTACATTATCTGCCTACCTCACAGCTGATCAGCAT
CAAGAGAGTGAGCGGCGCCGGTGCCGTCGACCGGTTTCGACTGGTGCTCT
CGGACGGACAACACTTTTCACAGTCCATGCTCGCGACGCAGCAAAACGAG
CTGATTACCAGCGGGAACCTGCAGGAGCTCAGCGTAATCACGCTGACAGA
CTACATCGTCAACACCGTGCAGAACAAGAGATGGGTTTCTCTCTGGTACA
TTATCTGCCTACCTCACAGCTGATCAGCATCAAGAGAGTGAGCGGCGCCG
GTGCCGTCGACCGGTTTCGACTGGTGCTCTCGGACGGACAACACTTTTCA
CAGTCCATGCTCGCGACGCAGCAAAACGAGCTGATTACCAGCGGGAACCT
GCAGGAGCTCAGCGTAATCACGCTGACAGACTACATCGTCAACACCGTGC
AGAACAAGAGGCTCATCATCGTGCTTCAGCTTGAGATCCAGGCGGGGCCG
CAGCCGGCCAAGGTAGGAAACCCCGTCAACGCTCATCATCGTGCTTCAGC
TTGAGATCCAGGCGGGGCCGCAGCCGGCCAAGGTAGGAAACCCCGTCAAC
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