prot_H-elongata_contig61208.13667.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61208.13667.1
Unique Nameprot_H-elongata_contig61208.13667.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.550e-30
Identity = 61/93 (65.59%), Postives = 83/93 (89.25%), Query Frame = 0
Query:    8 YLPTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            Y PT Q++S+K+++ AG  DR+RLVLSDGQHF+QSMLATQQNE+I+SG+L+EL +ITL+DYIVN VQNKRLII+L+L++ +GP P K+G+P+N
Sbjct:   23 YNPTVQVVSLKKMTNAGT-DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAP-KIGDPIN 113          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.910e-27
Identity = 53/74 (71.62%), Postives = 69/74 (93.24%), Query Frame = 0
Query:   27 DRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            DR+RLVLSDGQHF+QSMLATQQNE+I+SG+L+EL +ITL+DYIVN VQNKRLII+L+L++ +GP P K+G+P+N
Sbjct:    7 DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPIN 79          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 102 bits (254), Expect = 2.920e-23
Identity = 51/91 (56.04%), Postives = 73/91 (80.22%), Query Frame = 0
Query:   10 PTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            PT Q+I++K+V GAGA DRFRL++SDGQ+++Q MLATQ N L++S  LQEL ++ LT+Y+VN VQ +R++I L +E+ +GP P KVG+P N
Sbjct:   22 PTLQVINVKKVQGAGA-DRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVP-KVGDPQN 110          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: J6EY43_TRIAS (Replication protein A subunit n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6EY43_TRIAS)

HSP 1 Score: 92.0 bits (227), Expect = 6.690e-20
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   10 PTSQLISIKRV----SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            P  Q++S+KR+    SGA A DR+R++LSDG++F QSMLATQ N L+ +  L++ +VI LT +++NTVQN++LII+L LE Q      KVGNPVN
Sbjct:   25 PVLQVLSVKRINSPASGAQATDRYRVILSDGEYFIQSMLATQLNHLVENDELEKNTVIKLTSFVINTVQNRKLIIILALERQNW-NGQKVGNPVN 118          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S3FDD9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FDD9_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 8.150e-20
Identity = 43/90 (47.78%), Postives = 66/90 (73.33%), Query Frame = 0
Query:   11 TSQLISIKRV--SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNP 98
            T QL+ IK++  SG GA+DR+RLV+SDGQ + Q+MLATQ N L+ SG +Q+ SV+ L +Y+ N VQN+++II+L + +  G    ++G+P
Sbjct:   21 TLQLLDIKKINASGPGAMDRYRLVISDGQFYMQAMLATQLNSLVESGQVQQFSVVMLEEYLCNMVQNRKIIIILNMRVM-GAHGTQIGSP 109          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: K1VBR7_TRIAC (Replication protein A subunit n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1VBR7_TRIAC)

HSP 1 Score: 92.0 bits (227), Expect = 1.300e-19
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   10 PTSQLISIKRV----SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            P  Q++S+KR+    SGA A DR+R++LSDG++F QSMLATQ N L+ +  L++ +VI LT +++NTVQN++LII+L LE Q      KVGNPVN
Sbjct:   25 PVLQVLSVKRINSPASGAQATDRYRVILSDGEYFIQSMLATQLNHLVENDELEKNTVIKLTSFVINTVQNRKLIIILALERQNW-NGQKVGNPVN 118          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S0RMN9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RMN9_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 5.020e-19
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   10 PTSQLISIKRV-SGA-GAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNP 98
            P  Q I  KR+ +GA GAV+R+RL++SDG H+SQ+MLATQ N+LIT+  +Q  SV+ L +YIVN VQN+R+II L +E   G  P K+GNP
Sbjct:   64 PIVQCIDSKRIGNGAQGAVERYRLIISDGVHWSQAMLATQLNDLITTNQIQLHSVLRLNEYIVNNVQNRRIIIALGIE-PIGMSPVKLGNP 153          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A317XXN4_9BASI (Replication protein A subunit n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XXN4_9BASI)

HSP 1 Score: 87.8 bits (216), Expect = 4.030e-18
Identity = 38/96 (39.58%), Postives = 69/96 (71.88%), Query Frame = 0
Query:   10 PTSQLISIKRV-----SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            P  Q++SIK++     + A   DR+R++LSDG H++Q+MLA+Q+  ++ SG L++  ++ +  Y  N+VQN+R++I+L L++ +GP P ++GNP+N
Sbjct:   27 PVCQILSIKKIQATSTTAANVGDRYRIILSDGVHYAQAMLASQKRTMVESGELEKNCIVKVLQYAANSVQNRRILILLDLQVLSGPAPDRLGNPIN 122          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A7S3LLC6_9STRA (Replication protein A subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLC6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.510e-18
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 0
Query:    9 LPTSQLISIKRV---SGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN 100
            +P  Q+I IK++   + AGA +RFRL++SDGQHF ++ML+TQ N+L+ +  L   S++TL +YI N VQ +R++I+L L+I      AK+GNPVN
Sbjct:   19 VPVVQVIDIKKIESSTAAGAKERFRLIVSDGQHFQKAMLSTQLNDLVKTQQLVTNSIVTLQEYICNEVQGRRIVIILGLQINQ-TNSAKIGNPVN 112          
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Match: A0A8H7QB53_9FUNG (Replication protein A subunit n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7QB53_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 2.730e-17
Identity = 42/98 (42.86%), Postives = 69/98 (70.41%), Query Frame = 0
Query:    4 SLVHYLPTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNELITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQA-GPQPAKVGNPVN 100
            S ++  P  Q+I+IK+V  +  V+R+R+++SDG +F Q+MLA+Q   L+ +  LQ+ S+I L DY+ NT+QN+++II L +E+   GP   ++GNPVN
Sbjct:   19 SALYKNPVVQVINIKKVPTSNNVNRYRVIISDGTYFMQAMLASQHTALVENETLQKYSLIVLKDYVCNTLQNRKIIIALNIEVLPNGPDMHRIGNPVN 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61208.13667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE2.550e-3065.59Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU2_ECTSI1.910e-2771.62Rep-A_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XQ94_HETAK2.920e-2356.04Replication protein A subunit n=1 Tax=Heterosigma ... [more]
J6EY43_TRIAS6.690e-2052.63Replication protein A subunit n=1 Tax=Trichosporon... [more]
A0A7S3FDD9_9EUKA8.150e-2047.78Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
K1VBR7_TRIAC1.300e-1952.63Replication protein A subunit n=1 Tax=Trichosporon... [more]
A0A7S0RMN9_9CHLO5.020e-1954.95Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A317XXN4_9BASI4.030e-1839.58Replication protein A subunit n=1 Tax=Testicularia... [more]
A0A7S3LLC6_9STRA7.510e-1847.37Replication protein A subunit n=1 Tax=Aplanochytri... [more]
A0A8H7QB53_9FUNG2.730e-1742.86Replication protein A subunit n=1 Tax=Umbelopsis v... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 5..100
e-value: 2.8E-29
score: 103.3
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 10..97
NoneNo IPR availablePANTHERPTHR23273:SF33coord: 10..97
IPR007199Replication factor-A protein 1, N-terminalPFAMPF04057Rep-A_Ncoord: 10..86
e-value: 9.1E-22
score: 77.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61208contigH-elongata_contig61208:215..944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61208.13667.1mRNA_H-elongata_contig61208.13667.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61208 215..944 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61208.13667.1 ID=prot_H-elongata_contig61208.13667.1|Name=mRNA_H-elongata_contig61208.13667.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MGFSLVHYLPTSQLISIKRVSGAGAVDRFRLVLSDGQHFSQSMLATQQNE
LITSGNLQELSVITLTDYIVNTVQNKRLIIVLQLEIQAGPQPAKVGNPVN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007199Rep_factor-A_N
IPR012340NA-bd_OB-fold