mRNA_H-elongata_contig6113.13659.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: D7FQ04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ04_ECTSI) HSP 1 Score: 387 bits (995), Expect = 5.050e-121 Identity = 202/365 (55.34%), Postives = 224/365 (61.37%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTG----------------------------------------------------------------------------------------------GSAGAGV-------------RERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
+QRGPAEYDLFLRPDLHTHGHTQWFYFA+RGTHPPGVVG+S I+FN+VNLTKPDSLFAMGMRPV+YSH +A +GLGWRRCGH I+YRSNGY+W+KPDGS SFYTLS SVTF + GDTYRLAHAHPYSYSDHKRHLA LL +ER +RYL + C TLGGN+CDLLT+TD + PI TG GS G G R K CVVIS+RVHPGETPASWMMRGMLDF+ G+SAEARLLRSLFVFKIVPMLNPDGVA+GNNRC A
Sbjct: 377 VQRGPAEYDLFLRPDLHTHGHTQWFYFAVRGTHPPGVVGDSVIKFNVVNLTKPDSLFAMGMRPVMYSHKDAEEKGLGWRRCGHGIDYRSNGYSWYKPDGSHASFYTLSLSVTFPNSGDTYRLAHAHPYSYSDHKRHLAGLLENERTSRYLNHTILCKTLGGNDCDLLTVTDPHDTPITATGVVSSRSSSYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTKTNLEKSETTTEPIAAAAPVAGGASQAGAMNGSGGIGGEDVGNGSLGVGAGLGGRYGLGSMVGRRGMNKRCVVISARVHPGETPASWMMRGMLDFLMGDSAEARLLRSLFVFKIVPMLNPDGVAFGNNRCSLA 741
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: A0A6H5KD86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD86_9PHAE) HSP 1 Score: 387 bits (994), Expect = 9.510e-121 Identity = 203/363 (55.92%), Postives = 223/363 (61.43%), Query Frame = 1
Query: 4 QRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTG---------------------------------------------------------------------------------------------GSAGAGV-------------RERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
QRGPAEYDLFLRPDLHTHGHTQWFYFA+RGTHPPGVVG+S I+FN+VNLTKPDSLFAMGMRPV+YSH +A +GLGWRRCGH I+YRSNGY+W+KPDGS SFYTLS SVTF + GDTYRLAHAHPYSYSDHKRHLA LL +E +RYL V C TLGGN+CDLLT+TD + PI TG GS G G R K CVVIS+RVHPGETPASWMMRGMLDF+TG+SAEARLLRSLFVFKIVPMLNPDGVA+GNNRC A
Sbjct: 593 QRGPAEYDLFLRPDLHTHGHTQWFYFAVRGTHPPGVVGDSVIKFNVVNLTKPDSLFAMGMRPVMYSHKDAEEKGLGWRRCGHGIDYRSNGYSWYKPDGSHASFYTLSLSVTFPNSGDTYRLAHAHPYSYSDHKRHLAGLLENEGTSRYLNHTVLCKTLGGNDCDLLTVTDPHDTPITATGIVSSRSSSYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAGGAAQAGAMNGSGGIGGEDVGSGSLGVGAGLGGRYXXXXXXXRRGMNKRCVVISARVHPGETPASWMMRGMLDFLTGDSAEARLLRSLFVFKIVPMLNPDGVAFGNNRCSLA 955
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: A0A835YLX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX9_9STRA) HSP 1 Score: 311 bits (797), Expect = 2.000e-101 Identity = 154/261 (59.00%), Postives = 185/261 (70.88%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGL---GWRRCGHEINYRSNGYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
+QRGPAEYDLFLRPDLHTHGHTQWFYFAL ++ FNIVNLTKPDSLF+ GMRPVLYSH+E + L GWRRCG + YRSN PDGS G+FYTLSF+VTF GDTYRLAH +PY+ +DH RH+A+++AD RAR++ + C TLGG C+LLTIT+ + G KC V +S+RVHPGETPASWM+RG+LD++TG A A LLR LFVF++VP LNPDGVA+GNNRC A
Sbjct: 18 VQRGPAEYDLFLRPDLHTHGHTQWFYFALSNRCCALARRPVSVTFNIVNLTKPDSLFSSGMRPVLYSHYERSGDALAAPGWRRCGENVAYRSNA-----PDGSVGAFYTLSFTVTFPWVGDTYRLAHCYPYTLADHARHMARIMADPERARHVARATLCHTLGGTACELLTITEDAAAFLAAADGEENLKCSREEIKC-VTVSARVHPGETPASWMLRGILDYLTGAEAGAALLRRLFVFRVVPFLNPDGVAHGNNRCSLA 272
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: F0YI27_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI27_AURAN) HSP 1 Score: 279 bits (713), Expect = 6.970e-89 Identity = 138/255 (54.12%), Postives = 175/255 (68.63%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRC 765
+QRGP EYDLFLR DLHT G TQWFYFA+ TH + + FNIVNLTKPDSLF +GM+PV+YS EA G+GW R G + Y++N H D ++YTLSF++ F P D Y +AH++PY+YSDHK H+A LL R+ R C TL +ECDL+TIT +E + + R K +++S+RVHPGETPASWMMRG+L+F+TGES +A++LRSLF+FKIVPMLNPDGV YGNNRC
Sbjct: 18 VQRGPKEYDLFLRADLHTEGFTQWFYFAVTNTHTHAAL----VTFNIVNLTKPDSLFNLGMQPVMYSCAEAVENGIGWVRTGTSVQYQAN----HPVDAGM-TYYTLSFTLAFYRPDDIYLIAHSYPYTYSDHKAHIANLLRSSRKRRVTRHSALCRTLDSHECDLMTITSNENDLRSNECNTTSMPYLTRRKKL-IILSARVHPGETPASWMMRGILEFLTGESNDAKILRSLFIFKIVPMLNPDGVIYGNNRC 262
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: F0YGU2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGU2_AURAN) HSP 1 Score: 273 bits (698), Expect = 1.420e-86 Identity = 141/264 (53.41%), Postives = 181/264 (68.56%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQG---SFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTIT-DSEERP--IVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
+QRGPAEYDLFLR DLHT G QWFYF + T P + +NLTKP+SLF GM+PV+YS +A G+GW R G + YRSN Y + + S ++YTLSF++ F D Y +AH++PY+YSDHK HLA +L R+ R + + CTTL G +CDL+TIT D++E P IV+ S + +R + T V++S+RVHPGETPASWMMRG+LDF+ G+S EAR+LR+LFVFKIVPMLNPDGV YGNNRC A
Sbjct: 22 VQRGPAEYDLFLRADLHTDGFMQWFYFGITNTCP-----RDHLDSRHMNLTKPESLFNTGMQPVIYSCADAAEHGIGWIRSGSHVEYRSNQYVRNGLNSSTADGATYYTLSFTLAFDRSDDVYLIAHSYPYTYSDHKAHLASMLRSLRKRRIVQHALLCTTLDGQDCDLITITGDADELPPGIVELSSSVPSFLRRKKT---VILSARVHPGETPASWMMRGILDFLVGDSHEARILRALFVFKIVPMLNPDGVLYGNNRCSLA 277
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: K3WJX9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJX9_GLOUD) HSP 1 Score: 239 bits (611), Expect = 4.260e-73 Identity = 129/275 (46.91%), Postives = 166/275 (60.36%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSN------------------GYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLL--ADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRC 765
+Q G EYDLFLR D +T+GH QWFYFA+ +S RFNIVNL KPDSLF G++P++YS +A + GW R G EI Y N G P S G +YTL+F++ F DTY +AH++PY++SDH++HLAQ+L + R L V C TL G CDLL+I+D GV+E + +VISSRVHPGE ASWMMRG++DF+ GES AR+LR LF+F+I+PMLNPDGV YGN+RC
Sbjct: 76 VQIGEYEYDLFLRRDFNTNGHMQWFYFAISNIQIIPGARKSKYRFNIVNLCKPDSLFNQGLQPIVYSVKDAKLKRTGWLRSGSEIYYFENPFPRSPKCTGKVPRNNNDGALEAAPQNSAGKYYTLTFTLEFADAEDTYLIAHSYPYTFSDHQQHLAQILHQSSRRIQTILRHSVLCKTLSGKNCDLLSISDFS------------TGVQELKARKAIVISSRVHPGEPQASWMMRGVIDFLLGESDVARVLRRLFLFQIIPMLNPDGVYYGNSRC 338
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: A0A482S0V5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0V5_9ARCH) HSP 1 Score: 236 bits (602), Expect = 2.570e-71 Identity = 132/322 (40.99%), Postives = 175/322 (54.35%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPG---------VVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQ-GSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEER----PIVDTGGSAGAGV--------------------------------------------------RERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
+Q A+YDL LR D+HT GHTQWFYF + THPP V+ ++FNI+N TKPDSLF +GMRPV+YS E+ RG+GW R G EI+Y N YT + G G +YTLSF++ F H DT +A+++PY+ +D+K H+ +++ + + + CTTLGG +CDLL ITD +E+ PI S G+ R+ A K + IS RVHPGETPASWMM+G+LDF+ S A +LR L+V IVP+LNPDGV GNNRC A
Sbjct: 26 IQVSDAQYDLVLRADVHTVGHTQWFYFGVSNTHPPELVKLYDQGVVIPPVRVKFNIINFTKPDSLFNLGMRPVVYSVRESVERGVGWVRSGSEISYYVNNYTRNNNAGEGVGYYYTLSFTMEFTHAKDTVLIAYSYPYTMTDYKAHIEEIMDNHANTHLIKRLKLCTTLGGEDCDLLVITDFKEKEKVGPISLPSMSEWGGLDDSAQNNNFTSATLSAPSSSFIPSNMSTNSNLMSVTGSNKMKTKDKQEKYRQGAYKPALFISGRVHPGETPASWMMKGILDFLVSSSPSATMLRKLYVIFIVPVLNPDGVICGNNRCSLA 347
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: A0A418DPF1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DPF1_9STRA) HSP 1 Score: 235 bits (599), Expect = 7.300e-70 Identity = 129/266 (48.50%), Postives = 165/266 (62.03%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWH----KPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITD----SEERPIVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
+Q EYDL LRPDLHT G+TQWFYFA+ T P + A F+IVNL KPDSLF G++PV+YS +AT R +GW G + Y +N Y +P Q +F+TLSF++TF H DT +AH++PY+ DH+ HLA+ R + Q V CTTLG CDLLTITD RP+V V+++RVHPGE ASW+MRG+LDF+ ++ +A+LLR LFVFK+VPMLNPDGV YGNNRC A
Sbjct: 68 VQIADTEYDLILRPDLHTQGYTQWFYFAVANTEP-----DVAYTFHIVNLHKPDSLFRTGLQPVVYSVQDATCRAVGWTHAGSNVCYFANPYKQPSPVPRPCTDQLTFFTLSFTLTFPHAHDTTLVAHSYPYTMHDHRWHLARPAL--RCPDVVRQSVLCTTLGQQACDLLTITDFGHVDGRRPVV-------------------VLTARVHPGEPQASWIMRGVLDFLVSDAPDAKLLRRLFVFKVVPMLNPDGVMYGNNRCGLA 307
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: A0A7S0TYR6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TYR6_HEMAN) HSP 1 Score: 234 bits (598), Expect = 4.220e-69 Identity = 120/255 (47.06%), Postives = 164/255 (64.31%), Query Frame = 1
Query: 1 LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRC 765
+Q P+EYDL LRPD++T GHTQW+YF++ V +FN++NL KPDS++ G+RP++YS E + GLGW R G +I Y N K G G++YTL+F+VTF H DT LAH +PY+Y+D + +LA L AD R A + +RV C TL GN CDLLT+T P ++ ++I++RVHPGET ASWM++G +D++TG + +A++LR FVFKIVPMLNPDGV GN RC
Sbjct: 240 IQIYPSEYDLILRPDINTRGHTQWYYFSVSN-----VRRGRKYKFNLINLVKPDSVYNQGLRPLIYSEAEQSASGLGWHRTGVDIAYYQNNI---KRKG--GAYYTLTFTVTFPHDNDTCYLAHCYPYTYTDLQNYLASLEADPRVASRIRRRVLCKTLAGNNCDLLTVTSFSSDP------------EAMKSRKGILITARVHPGETQASWMLKGFVDYLTGPTLDAKILRDNFVFKIVPMLNPDGVINGNYRC 472
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Match: A0A8B9CCC1_9AVES (ATP/GTP binding protein like 2 n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9CCC1_9AVES) HSP 1 Score: 231 bits (589), Expect = 1.210e-68 Identity = 124/255 (48.63%), Postives = 158/255 (61.96%), Query Frame = 1
Query: 10 GPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLTKPDSLFAMGMRPVLYSHHEATTRGLGWRRCGHEINYRSNGYTWHKPDGSQGSFYTLSFSVTFLHPGDTYRLAHAHPYSYSDHKRHLAQLLADERRARYLTQRVSCTTLGGNECDLLTITDSEERPIVDTGGSAGAGVRERATKCCVVISSRVHPGETPASWMMRGMLDFITGESAEARLLRSLFVFKIVPMLNPDGVAYGNNRCRQA 774
GP EY L LRPDL+T HTQWFYF ++ T ++ RF I NL KP SL+ GMRP+LYS +A +RG+GWRR G E+ Y G G + + + LS+S+ F H GDT LAH++PY+YSD +R+L ++ D R+RY R C +L GN LLTIT G + GAG R VV+S+R HPGE+ SW MRG LDF+ + +ARLLR LFVFK+VPMLNPDGV GN+RC A
Sbjct: 105 GPYEYVLTLRPDLYTAKHTQWFYFRVQNTRR-----DAVYRFTIANLAKPKSLYGEGMRPLLYSQQDARSRGIGWRRVGAEVRYYRGG------GGEEPATFCLSWSMRFPHDGDTCYLAHSYPYTYSDLQRYLRAVVGDPVRSRYCAVRALCRSLAGNTVYLLTIT----------GPAGGAGKR------AVVLSARAHPGESGGSWAMRGFLDFVLSAAPDARLLRRLFVFKVVPMLNPDGVVVGNSRCSLA 332 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6113.13659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6113.13659.1 >prot_H-elongata_contig6113.13659.1 ID=prot_H-elongata_contig6113.13659.1|Name=mRNA_H-elongata_contig6113.13659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp LQRGPAEYDLFLRPDLHTHGHTQWFYFALRGTHPPGVVGESAIRFNIVNLback to top mRNA from alignment at H-elongata_contig6113:8996..10883+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6113.13659.1 ID=mRNA_H-elongata_contig6113.13659.1|Name=mRNA_H-elongata_contig6113.13659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1888bp|location=Sequence derived from alignment at H-elongata_contig6113:8996..10883+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6113:8996..10883+ >mRNA_H-elongata_contig6113.13659.1 ID=mRNA_H-elongata_contig6113.13659.1|Name=mRNA_H-elongata_contig6113.13659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig6113:8996..10883+ (Himanthalia elongata Himel1 dioecious)back to top |