prot_H-elongata_contig117455.1365.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117455.1365.1
Unique Nameprot_H-elongata_contig117455.1365.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
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BLAST of mRNA_H-elongata_contig117455.1365.1 vs. uniprot
Match: D7FND8_ECTSI (Drug/Metabolite transporter superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.280e-29
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0 
Query:    9 RYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGALFGVGACIILIGAATASMVTILPHTEVFDATEAVKMTNE 81
            +YISPLVVSLASLTVPLL VVEGLMLGVVSPPG LFG+GA +IL GA TASMVT+LPHTEVFDAT+AVK TNE
Sbjct:   87 KYISPLVVSLASLTVPLLTVVEGLMLGVVSPPGILFGIGAFLILTGAGTASMVTLLPHTEVFDATDAVKTTNE 159
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BLAST of mRNA_H-elongata_contig117455.1365.1 vs. uniprot
Match: A0A6H5JIJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.230e-27
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0 
Query:    9 RYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGALFGVGACIILIGAATASMVTILPHTEVFDATEAVKMTNE 81
            +YISPLVVSLASLTVPLLAVVEGLMLGVVSPPG LFG+GA +IL GA TASMVT+LPHTEVFDATEAVK T E
Sbjct:  596 KYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGILFGIGASLILTGAGTASMVTLLPHTEVFDATEAVKTTQE 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117455.1365.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FND8_ECTSI2.280e-2984.93Drug/Metabolite transporter superfamily n=1 Tax=Ec... [more]
A0A6H5JIJ2_9PHAE1.230e-2786.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..81
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 42..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117455contigH-elongata_contig117455:1536..1778 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117455.1365.1mRNA_H-elongata_contig117455.1365.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117455 1536..1778 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117455.1365.1 ID=prot_H-elongata_contig117455.1365.1|Name=mRNA_H-elongata_contig117455.1365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MWVKWVKYRYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGALFGVGACI
ILIGAATASMVTILPHTEVFDATEAVKMTNE
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