mRNA_H-elongata_contig117455.1365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117455.1365.1
Unique NamemRNA_H-elongata_contig117455.1365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117455.1365.1 vs. uniprot
Match: D7FND8_ECTSI (Drug/Metabolite transporter superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.280e-29
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   25 RYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGALFGVGACIILIGAATASMVTILPHTEVFDATEAVKMTNE 243
            +YISPLVVSLASLTVPLL VVEGLMLGVVSPPG LFG+GA +IL GA TASMVT+LPHTEVFDAT+AVK TNE
Sbjct:   87 KYISPLVVSLASLTVPLLTVVEGLMLGVVSPPGILFGIGAFLILTGAGTASMVTLLPHTEVFDATDAVKTTNE 159
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BLAST of mRNA_H-elongata_contig117455.1365.1 vs. uniprot
Match: A0A6H5JIJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.230e-27
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   25 RYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGALFGVGACIILIGAATASMVTILPHTEVFDATEAVKMTNE 243
            +YISPLVVSLASLTVPLLAVVEGLMLGVVSPPG LFG+GA +IL GA TASMVT+LPHTEVFDATEAVK T E
Sbjct:  596 KYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGILFGIGASLILTGAGTASMVTLLPHTEVFDATEAVKTTQE 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117455.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FND8_ECTSI2.280e-2984.93Drug/Metabolite transporter superfamily n=1 Tax=Ec... [more]
A0A6H5JIJ2_9PHAE1.230e-2786.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117455contigH-elongata_contig117455:1536..1778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-22_001320.1
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.547001-CDS-H-elongata_contig117455:1535..17781622929684.547001-CDS-H-elongata_contig117455:1535..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117455 1536..1778 +
1691679118.4916322-CDS-H-elongata_contig117455:1535..17781691679118.4916322-CDS-H-elongata_contig117455:1535..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117455 1536..1778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117455.1365.1prot_H-elongata_contig117455.1365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117455 1536..1778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117455.1365.1

>prot_H-elongata_contig117455.1365.1 ID=prot_H-elongata_contig117455.1365.1|Name=mRNA_H-elongata_contig117455.1365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MWVKWVKYRYISPLVVSLASLTVPLLAVVEGLMLGVVSPPGALFGVGACI
ILIGAATASMVTILPHTEVFDATEAVKMTNE
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mRNA from alignment at H-elongata_contig117455:1536..1778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117455.1365.1 ID=mRNA_H-elongata_contig117455.1365.1|Name=mRNA_H-elongata_contig117455.1365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig117455:1536..1778+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGTTAAATGGGTCAAGTACAGGTATATCTCTCCTTTGGTGGTTTC
CCTGGCGAGCCTGACGGTGCCGTTGCTAGCCGTCGTGGAGGGCCTTATGC
TCGGAGTGGTTAGCCCCCCTGGCGCCCTGTTTGGCGTCGGCGCGTGCATC
ATCCTCATCGGCGCAGCCACGGCCTCGATGGTAACCATCCTGCCACACAC
GGAAGTTTTCGACGCTACCGAGGCGGTGAAGATGACCAACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig117455:1536..1778+

>mRNA_H-elongata_contig117455.1365.1 ID=mRNA_H-elongata_contig117455.1365.1|Name=mRNA_H-elongata_contig117455.1365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig117455:1536..1778+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGTTAAATGGGTCAAGTACAGGTATATCTCTCCTTTGGTGGTTTC
CCTGGCGAGCCTGACGGTGCCGTTGCTAGCCGTCGTGGAGGGCCTTATGC
TCGGAGTGGTTAGCCCCCCTGGCGCCCTGTTTGGCGTCGGCGCGTGCATC
ATCCTCATCGGCGCAGCCACGGCCTCGATGGTAACCATCCTGCCACACAC
GGAAGTTTTCGACGCTACCGAGGCGGTGAAGATGACCAACGAGATGTGGG
TTAAATGGGTCAAGTACAGGTATATCTCTCCTTTGGTGGTTTCCCTGGCG
AGCCTGACGGTGCCGTTGCTAGCCGTCGTGGAGGGCCTTATGCTCGGAGT
GGTTAGCCCCCCTGGCGCCCTGTTTGGCGTCGGCGCGTGCATCATCCTCA
TCGGCGCAGCCACGGCCTCGATGGTAACCATCCTGCCACACACGGAAGTT
TTCGACGCTACCGAGGCGGTGAAGATGACCAACGAG
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