mRNA_H-elongata_contig6105.13652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6105.13652.1
Unique NamemRNA_H-elongata_contig6105.13652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 6.020e-71
Identity = 104/172 (60.47%), Postives = 132/172 (76.74%), Query Frame = 1
Query:    1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
            L+LAKGAKVM+++N++Q+ G++NGI+GEV E+V  +    P+ P YVVVK +GY+G +WS ++RYR C  I+PV+T+W       +GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEEVRL
Sbjct:  101 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.620e-69
Identity = 104/172 (60.47%), Postives = 132/172 (76.74%), Query Frame = 1
Query:    1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
            L+LAKGAKVM+++N++Q+ G++NGI+GEV E+V  +    P+ P YVVVK +GY+G +WS ++RYR C  I+PV+T+W       +GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEEVRL
Sbjct:  275 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 2.880e-63
Identity = 105/181 (58.01%), Postives = 133/181 (73.48%), Query Frame = 1
Query:    1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEV-----RLKAIF 528
            L+LAKGAKVM+++N++Q+ G++NGI+GEV E+V  +    P+ P YVVVK +GY+G +WS ++RYR C  I+PV+T+W       +GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEE      R  AIF
Sbjct: 1406 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEASDALDRQNAIF 1580          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 7.910e-63
Identity = 96/163 (58.90%), Postives = 123/163 (75.46%), Query Frame = 1
Query:   28 MITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
            M+++N++Q+ G++NGI+GEV E+V  +    P+ P YVVVK +GY+G +WS ++RYR C  I+PV+T+W       +GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEEVRL
Sbjct:    1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: UPI00106B9E63 (uncharacterized protein LOC114530406 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B9E63)

HSP 1 Score: 144 bits (362), Expect = 3.400e-39
Identity = 74/173 (42.77%), Postives = 104/173 (60.12%), Query Frame = 1
Query:    1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRLK 519
            L +AK A+VM+T N+W  AG+ NG+ G +++I+Y + +  P  P  VVVK D Y GP +S       C  I+P+  S +L    HE     R QLPL L W +T+HKSQG  + K  +D  +KE   G+++V LSR +KL+ ++IEPMPFDRLS +        RL EE RL+
Sbjct:  113 LLIAKKARVMLTMNLWPSAGLCNGVTGYIEDIIYAQSQEPPLLPTAVVVKFDNYIGPSFSTTPC---CVPISPITVSVNLNNVIHE-----RQQLPLTLAWALTIHKSQGMTIDKLWVDIGKKEHSLGMSYVALSRVRKLSSMVIEPMPFDRLSSIKKSDTLHYRLIEEKRLE 277          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT)

HSP 1 Score: 139 bits (349), Expect = 2.610e-38
Identity = 72/175 (41.14%), Postives = 101/175 (57.71%), Query Frame = 1
Query:    1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRLKAI 525
            +FL KGA+VM+T N+W   G+ NG  G + +IV+   +  P+ P  V+V  + Y GP +S+E     C  I P+  S        EGG   R QLPL+L W +T+HKSQG  LSKA ID  + E   G+++V +SR K L   +IEPM ++RL+ L      + RLQEE RL  +
Sbjct:   13 VFLPKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQL 180          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.110e-38
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  256 EGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
            +GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEEVRL
Sbjct:    9 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 7.190e-38
Identity = 68/107 (63.55%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  196 RDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
            +DC      +  WS   +D  GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEEVRL
Sbjct:   56 KDCRQACGGDR-WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.980e-37
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  256 EGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
            +GGT  RTQLPL+LCW ITMHKSQGQ L+KAVID   KE CTGLTFVCLSRAK+L DL++EPM FDR+  L   P  KARLQEEVRL
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93          
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A015JB11_RHIIW (Pif1p n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015JB11_RHIIW)

HSP 1 Score: 137 bits (345), Expect = 5.590e-37
Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRLKAI 525
            L LA+GA+VM+  N+W E G++NG  G VQEI+++E ++ P  P  V+++ D Y GP    E+  R    ++P+  SW     + +  T +R Q+P+ L W IT+HKSQG  L KAVID  +KE   G +FV +SR   L D+L  P  F+RL R+      + R++EE RL  +
Sbjct:   85 LLLARGARVMLRINLWTEVGLVNGSLGTVQEIIFEENQSPPSLPIAVLIEFDNYYGPAIVTEEGKR-LVPVSPIRYSW-----EGKKVTCSRLQVPICLAWAITIHKSQGLTLQKAVIDIGKKEYAAGQSFVAISRVCALKDILFSPFSFERLQRIKSLKRLEERIEEESRLMTL 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE6.020e-7160.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE7.620e-6960.47Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L976_9PHAE2.880e-6358.01ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5K4U7_9PHAE7.910e-6358.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00106B9E633.400e-3942.77uncharacterized protein LOC114530406 n=1 Tax=Dendr... [more]
A0A6S7KC61_PARCT2.610e-3841.14ATP-dependent DNA helicase PIF1 n=1 Tax=Paramurice... [more]
A0A6H5KSF1_9PHAE3.110e-3872.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE7.190e-3863.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.980e-3772.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A015JB11_RHIIW5.590e-3740.00Pif1p n=1 Tax=Rhizophagus irregularis (strain DAOM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6105contigH-elongata_contig6105:10247..10777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score125.6
Seed ortholog evalue2.3e-26
Seed eggNOG ortholog400682.PAC_15726636
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGs3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.5899124-UTR-H-elongata_contig6105:10246..102731622930985.5899124-UTR-H-elongata_contig6105:10246..10273Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6105 10247..10273 +
1691679651.2854137-UTR-H-elongata_contig6105:10246..102731691679651.2854137-UTR-H-elongata_contig6105:10246..10273Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6105 10247..10273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.6053655-CDS-H-elongata_contig6105:10273..107771622930985.6053655-CDS-H-elongata_contig6105:10273..10777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6105 10274..10777 +
1691679651.2959156-CDS-H-elongata_contig6105:10273..107771691679651.2959156-CDS-H-elongata_contig6105:10273..10777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6105 10274..10777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6105.13652.1prot_H-elongata_contig6105.13652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6105 10274..10777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6105.13652.1

>prot_H-elongata_contig6105.13652.1 ID=prot_H-elongata_contig6105.13652.1|Name=mRNA_H-elongata_contig6105.13652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
MITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQW
SDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQ
GQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGK
PVFKARLQEEVRLKAIF*
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mRNA from alignment at H-elongata_contig6105:10247..10777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6105.13652.1 ID=mRNA_H-elongata_contig6105.13652.1|Name=mRNA_H-elongata_contig6105.13652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig6105:10247..10777+ (Himanthalia elongata Himel1 dioecious)
TTGTTCCTGGCAAAGGGGGCTAAGGTTATGATTACGCGTAACATGTGGCA GGAAGCAGGGATCATCAACGGAATACAGGGAGAGGTTCAAGAGATAGTAT ACGACGAGGGCAAGGCAGCACCTGAGCAGCCGCGTTACGTGGTAGTGAAA CTGGACGGCTATACAGGACCACAGTGGTCGGACGAGGATCGGTATCGAGA TTGTGCTCTAATCGCTCCGGTTGAGACCTCCTGGTCTTTACCAGGTCAAG ATCATGAAGGTGGTACCATGACCAGAACTCAGCTCCCACTCAAGTTATGC TGGGATATTACCATGCACAAGAGTCAAGGCCAGGCGTTGTCAAAGGCCGT GATCGATTTTTGGGAAAAGGAAGTGTGTACTGGATTGACTTTCGTCTGTT TAAGTCGTGCTAAGAAGTTGACTGATTTGCTGATAGAACCAATGCCGTTC GATCGTCTCTCAAGGTTAAGCGGCAAGCCTGTTTTCAAGGCACGTTTGCA GGAAGAAGTCCGTCTCAAGGCAATCTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6105:10247..10777+

>mRNA_H-elongata_contig6105.13652.1 ID=mRNA_H-elongata_contig6105.13652.1|Name=mRNA_H-elongata_contig6105.13652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig6105:10247..10777+ (Himanthalia elongata Himel1 dioecious)
ATGATTACGCGTAACATGTGGCAGGAAGCAGGGATCATCAACGGAATACA
GGGAGAGGTTCAAGAGATAGTATACGACGAGGGCAAGGCAGCACCTGAGC
AGCCGCGTTACGTGGTAGTGAAACTGGACGGCTATACAGGACCACAGTGG
TCGGACGAGGATCGGTATCGAGATTGTGCTCTAATCGCTCCGGTTGAGAC
CTCCTGGTCTTTACCAGGTCAAGATCATGAAGGTGGTACCATGACCAGAA
CTCAGCTCCCACTCAAGTTATGCTGGGATATTACCATGCACAAGAGTCAA
GGCCAGGCGTTGTCAAAGGCCGTGATCGATTTTTGGGAAAAGGAAGTGTG
TACTGGATTGACTTTCGTCTGTTTAAGTCGTGCTAAGAAGTTGACTGATT
TGCTGATAGAACCAATGCCGTTCGATCGTCTCTCAAGGTTAAGCGGCAAG
CCTGTTTTCAAGGCACGTTTGCAGGAAGAAGTCCGTCTCAAGGCAATCTT
CTGAATGATTACGCGTAACATGTGGCAGGAAGCAGGGATCATCAACGGAA
TACAGGGAGAGGTTCAAGAGATAGTATACGACGAGGGCAAGGCAGCACCT
GAGCAGCCGCGTTACGTGGTAGTGAAACTGGACGGCTATACAGGACCACA
GTGGTCGGACGAGGATCGGTATCGAGATTGTGCTCTAATCGCTCCGGTTG
AGACCTCCTGGTCTTTACCAGGTCAAGATCATGAAGGTGGTACCATGACC
AGAACTCAGCTCCCACTCAAGTTATGCTGGGATATTACCATGCACAAGAG
TCAAGGCCAGGCGTTGTCAAAGGCCGTGATCGATTTTTGGGAAAAGGAAG
TGTGTACTGGATTGACTTTCGTCTGTTTAAGTCGTGCTAAGAAGTTGACT
GATTTGCTGATAGAACCAATGCCGTTCGATCGTCTCTCAAGGTTAAGCGG
CAAGCCTGTTTTCAAGGCACGTTTGCAGGAAGAAGTCCGTCTCAAGGCAA
TCTTCTGA
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