mRNA_H-elongata_contig6105.13652.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 225 bits (573), Expect = 6.020e-71 Identity = 104/172 (60.47%), Postives = 132/172 (76.74%), Query Frame = 1
Query: 1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
L+LAKGAKVM+++N++Q+ G++NGI+GEV E+V + P+ P YVVVK +GY+G +WS ++RYR C I+PV+T+W +GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEEVRL
Sbjct: 101 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 225 bits (573), Expect = 7.620e-69 Identity = 104/172 (60.47%), Postives = 132/172 (76.74%), Query Frame = 1
Query: 1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
L+LAKGAKVM+++N++Q+ G++NGI+GEV E+V + P+ P YVVVK +GY+G +WS ++RYR C I+PV+T+W +GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEEVRL
Sbjct: 275 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 220 bits (561), Expect = 2.880e-63 Identity = 105/181 (58.01%), Postives = 133/181 (73.48%), Query Frame = 1
Query: 1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEV-----RLKAIF 528
L+LAKGAKVM+++N++Q+ G++NGI+GEV E+V + P+ P YVVVK +GY+G +WS ++RYR C I+PV+T+W +GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEE R AIF
Sbjct: 1406 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEASDALDRQNAIF 1580
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 210 bits (534), Expect = 7.910e-63 Identity = 96/163 (58.90%), Postives = 123/163 (75.46%), Query Frame = 1
Query: 28 MITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
M+++N++Q+ G++NGI+GEV E+V + P+ P YVVVK +GY+G +WS ++RYR C I+PV+T+W +GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEEVRL
Sbjct: 1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: UPI00106B9E63 (uncharacterized protein LOC114530406 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B9E63) HSP 1 Score: 144 bits (362), Expect = 3.400e-39 Identity = 74/173 (42.77%), Postives = 104/173 (60.12%), Query Frame = 1
Query: 1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRLK 519
L +AK A+VM+T N+W AG+ NG+ G +++I+Y + + P P VVVK D Y GP +S C I+P+ S +L HE R QLPL L W +T+HKSQG + K +D +KE G+++V LSR +KL+ ++IEPMPFDRLS + RL EE RL+
Sbjct: 113 LLIAKKARVMLTMNLWPSAGLCNGVTGYIEDIIYAQSQEPPLLPTAVVVKFDNYIGPSFSTTPC---CVPISPITVSVNLNNVIHE-----RQQLPLTLAWALTIHKSQGMTIDKLWVDIGKKEHSLGMSYVALSRVRKLSSMVIEPMPFDRLSSIKKSDTLHYRLIEEKRLE 277
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT) HSP 1 Score: 139 bits (349), Expect = 2.610e-38 Identity = 72/175 (41.14%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRLKAI 525
+FL KGA+VM+T N+W G+ NG G + +IV+ + P+ P V+V + Y GP +S+E C I P+ S EGG R QLPL+L W +T+HKSQG LSKA ID + E G+++V +SR K L +IEPM ++RL+ L + RLQEE RL +
Sbjct: 13 VFLPKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQL 180
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 136 bits (342), Expect = 3.110e-38 Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 256 EGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
+GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEEVRL
Sbjct: 9 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE) HSP 1 Score: 137 bits (345), Expect = 7.190e-38 Identity = 68/107 (63.55%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 196 RDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
+DC + WS +D GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEEVRL
Sbjct: 56 KDCRQACGGDR-WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.980e-37 Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 256 EGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRL 516
+GGT RTQLPL+LCW ITMHKSQGQ L+KAVID KE CTGLTFVCLSRAK+L DL++EPM FDR+ L P KARLQEEVRL
Sbjct: 7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Match: A0A015JB11_RHIIW (Pif1p n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015JB11_RHIIW) HSP 1 Score: 137 bits (345), Expect = 5.590e-37 Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 1 LFLAKGAKVMITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWSDEDRYRDCALIAPVETSWSLPGQDHEGGTMTRTQLPLKLCWDITMHKSQGQALSKAVIDFWEKEVCTGLTFVCLSRAKKLTDLLIEPMPFDRLSRLSGKPVFKARLQEEVRLKAI 525
L LA+GA+VM+ N+W E G++NG G VQEI+++E ++ P P V+++ D Y GP E+ R ++P+ SW + + T +R Q+P+ L W IT+HKSQG L KAVID +KE G +FV +SR L D+L P F+RL R+ + R++EE RL +
Sbjct: 85 LLLARGARVMLRINLWTEVGLVNGSLGTVQEIIFEENQSPPSLPIAVLIEFDNYYGPAIVTEEGKR-LVPVSPIRYSW-----EGKKVTCSRLQVPICLAWAITIHKSQGLTLQKAVIDIGKKEYAAGQSFVAISRVCALKDILFSPFSFERLQRIKSLKRLEERIEEESRLMTL 253 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6105.13652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6105.13652.1 >prot_H-elongata_contig6105.13652.1 ID=prot_H-elongata_contig6105.13652.1|Name=mRNA_H-elongata_contig6105.13652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp MITRNMWQEAGIINGIQGEVQEIVYDEGKAAPEQPRYVVVKLDGYTGPQWback to top mRNA from alignment at H-elongata_contig6105:10247..10777+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6105.13652.1 ID=mRNA_H-elongata_contig6105.13652.1|Name=mRNA_H-elongata_contig6105.13652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig6105:10247..10777+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6105:10247..10777+ >mRNA_H-elongata_contig6105.13652.1 ID=mRNA_H-elongata_contig6105.13652.1|Name=mRNA_H-elongata_contig6105.13652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig6105:10247..10777+ (Himanthalia elongata Himel1 dioecious)back to top |