mRNA_H-elongata_contig61029.13651.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI) HSP 1 Score: 188 bits (478), Expect = 4.700e-59 Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MRKLKYHEQKLLKKVDFLQWKSD+NIREIQVLRRYLVQNRDDY KYNKIVGLITKLTARLKTLD SDEFRIKMTEQ+L+KLF+MG+IN KKSLAKTE A+VS+FCR
Sbjct: 1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK) HSP 1 Score: 156 bits (394), Expect = 2.660e-46 Identity = 76/106 (71.70%), Postives = 93/106 (87.74%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MRKLK+HEQKLLKKVDFLQWKSD+NIREI+++RRYL+Q+R+DYTKYNKI G + KL A+L+ L P+D+FRIKMTE +L+KLF+MGVIN+KKSL E VSAFCR
Sbjct: 1 MRKLKHHEQKLLKKVDFLQWKSDQNIREIKIIRRYLLQDREDYTKYNKICGHMWKLVAKLRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.820e-44 Identity = 75/106 (70.75%), Postives = 90/106 (84.91%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MRKLKYHEQKLLKKVDFLQWKSD+NIREI+VLRRY +Q+R+DY KYN++VG +T L A+LKTL +D FR+KMT Q+L KL S+GVI+ +KSL K E TVSAFCR
Sbjct: 1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIKVLRRYHIQDREDYVKYNRLVGHVTSLAAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: W7TJ95_9STRA (Ribosomal protein S4/S9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ95_9STRA) HSP 1 Score: 149 bits (377), Expect = 3.000e-44 Identity = 73/106 (68.87%), Postives = 90/106 (84.91%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MR+L++HEQKLLKKVDFLQWKSD+NIREI++LRRY +Q+R+DY KYNKI G ITKLTA+LK L P DEFRIKMT+ +L KL++MG+I KKSL++ E SAFCR
Sbjct: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.010e-43 Identity = 73/106 (68.87%), Postives = 90/106 (84.91%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MR+L++HEQKLLKKVDFLQWKSD+NIREI++LRRY +Q+R+DY KYNKI G ITKLTA+LK L P DEFRIKMT+ +L KL++MG+I KKSL++ E SAFCR
Sbjct: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A060S5L8_PLARE (U3 small nucleolar ribonucleoprotein IMP3, putative n=26 Tax=Plasmodium TaxID=5820 RepID=A0A060S5L8_PLARE) HSP 1 Score: 149 bits (375), Expect = 2.030e-43 Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MRKLKYHEQKLLKKV+F WK N+RE++VLR+Y++QNR+DYTKYNKI G ITKL ++L+ L +DEFRIKMTE++LDKL+ MG+IN K SLA+ E TVS+FCR
Sbjct: 1 MRKLKYHEQKLLKKVNFYDWKRTNNVREVKVLRKYVIQNREDYTKYNKICGYITKLVSKLRLLPENDEFRIKMTEELLDKLYDMGLINYKSSLAECEKITVSSFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A077TNV8_PLACH (U3 small nucleolar ribonucleoprotein protein IMP3, putative n=13 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=A0A077TNV8_PLACH) HSP 1 Score: 148 bits (374), Expect = 2.880e-43 Identity = 70/106 (66.04%), Postives = 90/106 (84.91%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MRKLKYHEQKLLKKV+F WK +N+RE++VLRRY++QNR+DYTKYNKI G ITKL ++L+ L +DEFRIKMT+++LDKL+ MG+IN K SLA+ E +VS+FCR
Sbjct: 1 MRKLKYHEQKLLKKVNFYDWKRTQNVREVKVLRRYVIQNREDYTKYNKICGYITKLVSKLRLLPENDEFRIKMTDELLDKLYEMGLINCKSSLAECEKLSVSSFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A250X5I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5I3_9CHLO) HSP 1 Score: 147 bits (371), Expect = 7.990e-43 Identity = 72/106 (67.92%), Postives = 91/106 (85.85%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MR+LK+HE+KLLKKVDFL+WK++ N+RE+QV+RRY +Q+RDDY KYNKIVGLITKLT+ LK LD D RI++T+Q+L+KLFSMGV+ KKSL +TE VSAFCR
Sbjct: 1 MRQLKFHEKKLLKKVDFLKWKNEDNLRELQVMRRYHIQDRDDYKKYNKIVGLITKLTSVLKQLDAKDTARIELTDQLLEKLFSMGVVPTKKSLVQTEKLAVSAFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A8C9GZ43_9PRIM (Ribosomal_S4 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A8C9GZ43_9PRIM) HSP 1 Score: 147 bits (371), Expect = 8.230e-43 Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MRKLKYHEQKLLKKV+F WK +N+RE++VLRRYL+QNR+DY KYNKI G ITKL ++L+ L +DEFRIKMT ++LDKL+ MG+IN K SLA+ E +VS+FCR
Sbjct: 1 MRKLKYHEQKLLKKVNFYDWKRTKNVREVKVLRRYLIQNREDYAKYNKICGYITKLVSKLRLLPENDEFRIKMTSELLDKLYEMGIINNKSSLAECERISVSSFCR 106
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA) HSP 1 Score: 146 bits (369), Expect = 1.610e-42 Identity = 70/106 (66.04%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 4 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 321
MR+LKYHEQKLLKKVDFL+WKSD N+RE+QVLRRY +Q+RDDY KYNKI G+ITKLT+ LK LDP D RI++T+Q+L+KL++MGV+ KKSL + + +AFCR
Sbjct: 1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCR 106 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61029.13651.1 >prot_H-elongata_contig61029.13651.1 ID=prot_H-elongata_contig61029.13651.1|Name=mRNA_H-elongata_contig61029.13651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVback to top mRNA from alignment at H-elongata_contig61029:716..2081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61029.13651.1 ID=mRNA_H-elongata_contig61029.13651.1|Name=mRNA_H-elongata_contig61029.13651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1366bp|location=Sequence derived from alignment at H-elongata_contig61029:716..2081- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61029:716..2081- >mRNA_H-elongata_contig61029.13651.1 ID=mRNA_H-elongata_contig61029.13651.1|Name=mRNA_H-elongata_contig61029.13651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig61029:716..2081- (Himanthalia elongata Himel1 dioecious)back to top |