prot_H-elongata_contig61029.13651.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61029.13651.1
Unique Nameprot_H-elongata_contig61029.13651.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 6.410e-59
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MRKLKYHEQKLLKKVDFLQWKSD+NIREIQVLRRYLVQNRDDY KYNKIVGLITKLTARLKTLD SDEFRIKMTEQ+L+KLF+MG+IN KKSLAKTE A+VS+FCR
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 155 bits (393), Expect = 3.630e-46
Identity = 76/106 (71.70%), Postives = 93/106 (87.74%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MRKLK+HEQKLLKKVDFLQWKSD+NIREI+++RRYL+Q+R+DYTKYNKI G + KL A+L+ L P+D+FRIKMTE +L+KLF+MGVIN+KKSL   E   VSAFCR
Sbjct:    1 MRKLKHHEQKLLKKVDFLQWKSDQNIREIKIIRRYLLQDREDYTKYNKICGHMWKLVAKLRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.480e-44
Identity = 75/106 (70.75%), Postives = 90/106 (84.91%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MRKLKYHEQKLLKKVDFLQWKSD+NIREI+VLRRY +Q+R+DY KYN++VG +T L A+LKTL  +D FR+KMT Q+L KL S+GVI+ +KSL K E  TVSAFCR
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIKVLRRYHIQDREDYVKYNRLVGHVTSLAAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: W7TJ95_9STRA (Ribosomal protein S4/S9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ95_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.090e-44
Identity = 73/106 (68.87%), Postives = 90/106 (84.91%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MR+L++HEQKLLKKVDFLQWKSD+NIREI++LRRY +Q+R+DY KYNKI G ITKLTA+LK L P DEFRIKMT+ +L KL++MG+I  KKSL++ E    SAFCR
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.380e-43
Identity = 73/106 (68.87%), Postives = 90/106 (84.91%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MR+L++HEQKLLKKVDFLQWKSD+NIREI++LRRY +Q+R+DY KYNKI G ITKLTA+LK L P DEFRIKMT+ +L KL++MG+I  KKSL++ E    SAFCR
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A060S5L8_PLARE (U3 small nucleolar ribonucleoprotein IMP3, putative n=26 Tax=Plasmodium TaxID=5820 RepID=A0A060S5L8_PLARE)

HSP 1 Score: 148 bits (374), Expect = 2.770e-43
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MRKLKYHEQKLLKKV+F  WK   N+RE++VLR+Y++QNR+DYTKYNKI G ITKL ++L+ L  +DEFRIKMTE++LDKL+ MG+IN K SLA+ E  TVS+FCR
Sbjct:    1 MRKLKYHEQKLLKKVNFYDWKRTNNVREVKVLRKYVIQNREDYTKYNKICGYITKLVSKLRLLPENDEFRIKMTEELLDKLYDMGLINYKSSLAECEKITVSSFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A077TNV8_PLACH (U3 small nucleolar ribonucleoprotein protein IMP3, putative n=13 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=A0A077TNV8_PLACH)

HSP 1 Score: 148 bits (373), Expect = 3.930e-43
Identity = 70/106 (66.04%), Postives = 90/106 (84.91%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MRKLKYHEQKLLKKV+F  WK  +N+RE++VLRRY++QNR+DYTKYNKI G ITKL ++L+ L  +DEFRIKMT+++LDKL+ MG+IN K SLA+ E  +VS+FCR
Sbjct:    1 MRKLKYHEQKLLKKVNFYDWKRTQNVREVKVLRRYVIQNREDYTKYNKICGYITKLVSKLRLLPENDEFRIKMTDELLDKLYEMGLINCKSSLAECEKLSVSSFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A250X5I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5I3_9CHLO)

HSP 1 Score: 147 bits (370), Expect = 1.090e-42
Identity = 72/106 (67.92%), Postives = 91/106 (85.85%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MR+LK+HE+KLLKKVDFL+WK++ N+RE+QV+RRY +Q+RDDY KYNKIVGLITKLT+ LK LD  D  RI++T+Q+L+KLFSMGV+  KKSL +TE   VSAFCR
Sbjct:    1 MRQLKFHEKKLLKKVDFLKWKNEDNLRELQVMRRYHIQDRDDYKKYNKIVGLITKLTSVLKQLDAKDTARIELTDQLLEKLFSMGVVPTKKSLVQTEKLAVSAFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: A0A8C9GZ43_9PRIM (Ribosomal_S4 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A8C9GZ43_9PRIM)

HSP 1 Score: 147 bits (370), Expect = 1.120e-42
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MRKLKYHEQKLLKKV+F  WK  +N+RE++VLRRYL+QNR+DY KYNKI G ITKL ++L+ L  +DEFRIKMT ++LDKL+ MG+IN K SLA+ E  +VS+FCR
Sbjct:    1 MRKLKYHEQKLLKKVNFYDWKRTKNVREVKVLRRYLIQNREDYAKYNKICGYITKLVSKLRLLPENDEFRIKMTSELLDKLYEMGIINNKSSLAECERISVSSFCR 106          
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA)

HSP 1 Score: 146 bits (368), Expect = 2.190e-42
Identity = 70/106 (66.04%), Postives = 89/106 (83.96%), Query Frame = 0
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIVGLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENATVSAFCR 106
            MR+LKYHEQKLLKKVDFL+WKSD N+RE+QVLRRY +Q+RDDY KYNKI G+ITKLT+ LK LDP D  RI++T+Q+L+KL++MGV+  KKSL + +    +AFCR
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCR 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61029.13651.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI6.410e-5989.62Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A6S9JYI8_HETAK3.630e-4671.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CN51_9STRA2.480e-4470.75Small nucleolar ribonucleoprotein U3 component n=1... [more]
W7TJ95_9STRA4.090e-4468.87Ribosomal protein S4/S9 n=1 Tax=Nannochloropsis ga... [more]
W7TBD6_9STRA1.380e-4368.87Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
A0A060S5L8_PLARE2.770e-4366.98U3 small nucleolar ribonucleoprotein IMP3, putativ... [more]
A0A077TNV8_PLACH3.930e-4366.04U3 small nucleolar ribonucleoprotein protein IMP3,... [more]
A0A250X5I3_9CHLO1.090e-4267.92Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A8C9GZ43_9PRIM1.120e-4266.04Ribosomal_S4 domain-containing protein n=3 Tax=Euk... [more]
D8UBE0_VOLCA2.190e-4266.04Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 1.7E-26
score: 104.0
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
e-value: 1.3E-8
score: 35.6
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..106
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61029contigH-elongata_contig61029:716..2078 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61029.13651.1mRNA_H-elongata_contig61029.13651.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61029 716..2081 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61029.13651.1 ID=prot_H-elongata_contig61029.13651.1|Name=mRNA_H-elongata_contig61029.13651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MRKLKYHEQKLLKKVDFLQWKSDRNIREIQVLRRYLVQNRDDYTKYNKIV
GLITKLTARLKTLDPSDEFRIKMTEQMLDKLFSMGVINAKKSLAKTENAT
VSAFCRCVLLIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR022801Ribosomal_S4/S9