prot_H-elongata_contig60729.13611.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60729.13611.1
Unique Nameprot_H-elongata_contig60729.13611.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length158
Homology
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.850e-29
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 0
Query:    1 NIQLWHRQLGHLNRTSLEPMQRHQING-----TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            N   WHR L HLN  S+E +++ + NG     ++  CD+CAI K +QLAHP+K    + T P +L Y D MG  TP A GGF YVSK TD ++    +YLL+     + + H +    A   G R+   R + GG+  +  F ++F++  IT ++ ATNTPQ
Sbjct:  307 NANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTN-RETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQ 467          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.820e-26
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 0
Query:    4 LWHRQLGHLNRTSLEPMQRHQINGT-----IADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            LWHR+L H ++  +E   R +  G      +  C+ C ++K  Q  HPK A+++ + +P +  Y DL+GP +P A GGFNYVSK TD+++R   VYL+  K  A+ +   FI       G R+ R R+D GG+YT++ + +F     I ++F A  TPQ
Sbjct:  470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAV-QPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQ 627          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.820e-25
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 0
Query:    6 HRQLGHLNRTSLEPMQRHQIN-----GTIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            HR+LGHLN  S++ +++ + N      ++  CD+CAI K  QLAHPKK    + T P  L Y D+MG  TP A GGF YVS   D ++R   +YLL+ K   + + H +    A   G  +   R D+G +  +  F  + ++  IT ++ ATNTPQ
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTS-RETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQ 265          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.450e-25
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 0
Query:   24 QINGTIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            ++   +A C+ C I+K  Q  HPK AQ++ + +P +  Y DL+GP +P A GG+NYVSK TD+++R   VYL+  K  A+ +   FI       G R+ R R+D GG+YTS+ ++ F     I ++F A  TPQ
Sbjct:   13 KLKDKMAPCETCIIQKSTQKKHPKTAQHTAV-QPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQ 145          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.370e-25
Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 0
Query:    5 WHRQLGHLNRTSLEPMQRHQING-----TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            WH++LGH N   LE + R   +G     + + C  C I K  Q  HPK A    IT   +L   DL+GP +P A GG+NY++K TD  TR  AVY + +KG AL S   ++   A   G RV    +D GG+Y +  F+ +     I ++F + +TPQ
Sbjct:  240 WHQRLGHPNVQVLEQLARIDGSGVHLRDSFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQ 397          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS)

HSP 1 Score: 101 bits (252), Expect = 4.850e-22
Identity = 57/163 (34.97%), Postives = 86/163 (52.76%), Query Frame = 0
Query:    4 LWHRQLGHLNRTSLEPMQ-RHQING--------TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            LWHR+ GHLN   L  +  +  +NG        T A CD+C   K  + + PKK+ +   T P +L + D+ GP +P ++ G  Y+    D F+R    +LL EK  A   F  F  +     G +++  RTD+GG+Y+SKAF++F  E  I ++  A  TPQ
Sbjct:  413 LWHRRFGHLNYGGLRILAAKKMVNGLPITGLEETEAACDICFRGKQNRHSIPKKSDWKSTT-PLQLVHSDICGPISPISESGKRYIINFIDDFSRKCWTFLLTEKSEAFQVFKEFKAAAERESGQQLVCLRTDRGGEYSSKAFEEFCRENGIKRQLTAAYTPQ 574          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 100 bits (249), Expect = 1.270e-21
Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 0
Query:    4 LWHRQLGHLNRTSLEPMQRHQINGTIAD-------CDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            LWH +LGH+N   +E M R  +   I         C+ C + K  + + P +AQ+     P EL Y DL GP TP+  GG  Y   I D F R+  VY+++ K  A   F  F T        ++   RTD+GG++TS+AF  F  E  I ++  A  TPQ
Sbjct:  481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWR-AKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQ 640          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: UPI001929FDC5 (uncharacterized protein LOC120272535 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929FDC5)

HSP 1 Score: 97.1 bits (240), Expect = 1.660e-20
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 0
Query:    4 LWHRQLGHLNRTSLEPMQRHQ-INGT-----IADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            LWHR+ GHLN+ SL  +  H+ ++G      I  C+ CA+ K    A PK   Y   T P EL +GDL+GP    + GG  Y   + D F+R + VY L+ K  AL  F +F  +        V  +R+D+G ++TS AF+ F  E  I  +  A  TP+
Sbjct:  369 LWHRRYGHLNKRSLNYLNEHKLVDGLPTITHIQPCEACALGKQAHRAFPKGQAYR-ATTPLELVHGDLVGPMQTPSYGGNLYFFLLIDDFSRHSWVYFLQYKNEALQKFKVFKLAVEKQYSTPVKAFRSDRGREFTSGAFRAFCEETGIKHQLTAPRTPR 527          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.590e-20
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 0
Query:   29 IADCDVCAIEK---PQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            +A C+ C I+K   P++    K AQ++ + +P +  Y DL+GP +P A GG+NYVSK TD+++R   VYL+  K  A+ +   FI       G R+ R R D GG+Y+S+ ++ F     I ++F    TPQ
Sbjct:    1 MAPCETCKIQKSTLPKRNTLTKTAQHTAV-QPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQ 131          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A2K3MWU3_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWU3_TRIPR)

HSP 1 Score: 95.1 bits (235), Expect = 9.600e-20
Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 0
Query:    3 QLWHRQLGHLNRTSLEPM-QRHQINGTIA------DCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 157
            QLWH++ GHL+   L  + ++  + G  A       C  C   K  +   PKK  +   T   EL + D+ GP  P ++ G  Y    TD FTR T VY+L++K  A  SF  F        G +++  RTD+GG++ S+AF ++  E+ I ++     TPQ
Sbjct:  428 QLWHKRYGHLSYKGLNTLVKKEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWR-ATHKLELIHSDICGPINPASNSGNKYFITFTDDFTRKTWVYILQDKASAFESFKRFKAVAEKESGCQILSLRTDRGGEFMSEAFNKYCTEQGIKRQLTTAYTPQ 588          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE4.850e-2938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE1.820e-2637.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JT61_9PHAE3.820e-2537.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE6.450e-2539.55Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAG6_9PHAE7.370e-2537.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HN99_9BRAS4.850e-2234.97Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI0016531AD11.270e-2135.40uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
UPI001929FDC51.660e-2036.25uncharacterized protein LOC120272535 n=1 Tax=Diosc... [more]
A0A6H5KFB1_9PHAE3.590e-2037.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3MWU3_TRIPR9.600e-2032.72Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 48..157
e-value: 4.6E-13
score: 50.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..157
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..157
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 53..157
score: 11.554
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 54..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60729contigH-elongata_contig60729:48..521 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60729.13611.1mRNA_H-elongata_contig60729.13611.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60729 48..521 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60729.13611.1 ID=prot_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
NIQLWHRQLGHLNRTSLEPMQRHQINGTIADCDVCAIEKPQQLAHPKKAQ
YSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKG
CALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKF
VATNTPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf