mRNA_H-elongata_contig60729.13611.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 121 bits (304), Expect = 4.850e-29 Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 1 NIQLWHRQLGHLNRTSLEPMQRHQING-----TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
N WHR L HLN S+E +++ + NG ++ CD+CAI K +QLAHP+K + T P +L Y D MG TP A GGF YVSK TD ++ +YLL+ + + H + A G R+ R + GG+ + F ++F++ IT ++ ATNTPQ
Sbjct: 307 NANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTN-RETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQ 467
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.820e-26 Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 1
Query: 10 LWHRQLGHLNRTSLEPMQRHQINGT-----IADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
LWHR+L H ++ +E R + G + C+ C ++K Q HPK A+++ + +P + Y DL+GP +P A GGFNYVSK TD+++R VYL+ K A+ + FI G R+ R R+D GG+YT++ + +F I ++F A TPQ
Sbjct: 470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAV-QPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQ 627
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE) HSP 1 Score: 110 bits (275), Expect = 3.820e-25 Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 1
Query: 16 HRQLGHLNRTSLEPMQRHQIN-----GTIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
HR+LGHLN S++ +++ + N ++ CD+CAI K QLAHPKK + T P L Y D+MG TP A GGF YVS D ++R +YLL+ K + + H + A G + R D+G + + F + ++ IT ++ ATNTPQ
Sbjct: 110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTS-RETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQ 265
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 109 bits (273), Expect = 6.450e-25 Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 70 QINGTIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
++ +A C+ C I+K Q HPK AQ++ + +P + Y DL+GP +P A GG+NYVSK TD+++R VYL+ K A+ + FI G R+ R R+D GG+YTS+ ++ F I ++F A TPQ
Sbjct: 13 KLKDKMAPCETCIIQKSTQKKHPKTAQHTAV-QPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQ 145
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 109 bits (273), Expect = 7.370e-25 Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 1
Query: 13 WHRQLGHLNRTSLEPMQRHQING-----TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
WH++LGH N LE + R +G + + C C I K Q HPK A IT +L DL+GP +P A GG+NY++K TD TR AVY + +KG AL S ++ A G RV +D GG+Y + F+ + I ++F + +TPQ
Sbjct: 240 WHQRLGHPNVQVLEQLARIDGSGVHLRDSFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQ 397
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS) HSP 1 Score: 101 bits (252), Expect = 4.850e-22 Identity = 57/163 (34.97%), Postives = 86/163 (52.76%), Query Frame = 1
Query: 10 LWHRQLGHLNRTSLEPMQ-RHQING--------TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
LWHR+ GHLN L + + +NG T A CD+C K + + PKK+ + T P +L + D+ GP +P ++ G Y+ D F+R +LL EK A F F + G +++ RTD+GG+Y+SKAF++F E I ++ A TPQ
Sbjct: 413 LWHRRFGHLNYGGLRILAAKKMVNGLPITGLEETEAACDICFRGKQNRHSIPKKSDWKSTT-PLQLVHSDICGPISPISESGKRYIINFIDDFSRKCWTFLLTEKSEAFQVFKEFKAAAERESGQQLVCLRTDRGGEYSSKAFEEFCRENGIKRQLTAAYTPQ 574
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1) HSP 1 Score: 100 bits (249), Expect = 1.270e-21 Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 10 LWHRQLGHLNRTSLEPMQRHQINGTIAD-------CDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
LWH +LGH+N +E M R + I C+ C + K + + P +AQ+ P EL Y DL GP TP+ GG Y I D F R+ VY+++ K A F F T ++ RTD+GG++TS+AF F E I ++ A TPQ
Sbjct: 481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWR-AKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQ 640
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: UPI001929FDC5 (uncharacterized protein LOC120272535 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929FDC5) HSP 1 Score: 97.1 bits (240), Expect = 1.660e-20 Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query: 10 LWHRQLGHLNRTSLEPMQRHQ-INGT-----IADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
LWHR+ GHLN+ SL + H+ ++G I C+ CA+ K A PK Y T P EL +GDL+GP + GG Y + D F+R + VY L+ K AL F +F + V +R+D+G ++TS AF+ F E I + A TP+
Sbjct: 369 LWHRRYGHLNKRSLNYLNEHKLVDGLPTITHIQPCEACALGKQAHRAFPKGQAYR-ATTPLELVHGDLVGPMQTPSYGGNLYFFLLIDDFSRHSWVYFLQYKNEALQKFKVFKLAVEKQYSTPVKAFRSDRGREFTSGAFRAFCEETGIKHQLTAPRTPR 527
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 3.590e-20 Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 85 IADCDVCAIEK---PQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
+A C+ C I+K P++ K AQ++ + +P + Y DL+GP +P A GG+NYVSK TD+++R VYL+ K A+ + FI G R+ R R D GG+Y+S+ ++ F I ++F TPQ
Sbjct: 1 MAPCETCKIQKSTLPKRNTLTKTAQHTAV-QPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQ 131
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A2K3MWU3_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWU3_TRIPR) HSP 1 Score: 95.1 bits (235), Expect = 9.600e-20 Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 1
Query: 7 QLWHRQLGHLNRTSLEPM-QRHQINGTIA------DCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
QLWH++ GHL+ L + ++ + G A C C K + PKK + T EL + D+ GP P ++ G Y TD FTR T VY+L++K A SF F G +++ RTD+GG++ S+AF ++ E+ I ++ TPQ
Sbjct: 428 QLWHKRYGHLSYKGLNTLVKKEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWR-ATHKLELIHSDICGPINPASNSGNKYFITFTDDFTRKTWVYILQDKASAFESFKRFKAVAEKESGCQILSLRTDRGGEFMSEAFNKYCTEQGIKRQLTTAYTPQ 588 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60729.13611.1 >prot_H-elongata_contig60729.13611.1 ID=prot_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp NIQLWHRQLGHLNRTSLEPMQRHQINGTIADCDVCAIEKPQQLAHPKKAQback to top mRNA from alignment at H-elongata_contig60729:48..521- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60729.13611.1 ID=mRNA_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig60729:48..521- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60729:48..521- >mRNA_H-elongata_contig60729.13611.1 ID=mRNA_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig60729:48..521- (Himanthalia elongata Himel1 dioecious)back to top |