prot_H-elongata_contig6024.13560.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6024.13560.1
Unique Nameprot_H-elongata_contig6024.13560.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1086
Homology
BLAST of mRNA_H-elongata_contig6024.13560.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 3.940e-49
Identity = 341/1214 (28.09%), Postives = 471/1214 (38.80%), Query Frame = 0
Query:   10 AKEPKTEFQADIQMAKALSKSLVV-SARGVGNRTEEELQDEEELARDPAAFQAKEKRLVATLKDLDQKLERLQKDREMALKKLATHRALGARTSADSKHCSM---------APKTATEVVDLLFAEEQDR--------------------RVCVPGKEPRRGEKRKTLSPIAVDSLEAMSAGRSIAPEQDG-TDLSS----VLLPQATK---------PMCGRNEDGSD-------------------GSSSVGGG---DGDIDGHGDSA--------GVPKLTRRRSGSGRIRRDGQGHVSSS--------RDKTMWSIARDADWLSQSSFVTGAFADIRVEAAAKKEARARESQEARSAVGQGA----------QTSSVTASAYGDPSLYNRRPAGSDAGTAGAPRRSTPGSIDIGRRGPCSDSEDAD----------STRRQRPRLWRGNDDCGVELDSEFDERDAMADDAVLLLTQILSEGHA--VPRRPNKGVTNVSLEKAAASLASNSTAEKIAERHIARAPVAVVSQLFHDWEENVRYVFRQGADELRGALESINAALSEEEMAVIAAVASRNSESLDGEIAEGKCPTLEAGPTHEGAGGEKAKALLFFKGVILDALEMKAALEVDLGSENDFSEVKDIRADVIERGTDVRDEG------DLASVRGRRIAGRALGFADDKLPGEISGGDVSCRNGSNS--QSSWSRNIPNV-GMAKEDGDADKEG-------GDAGDILGQAKGEAQNVEDGSYALGKNN---------------STSLAAPSPTSSTKSITTIILSGDSSRDAIVTFDLTTS------------------------------GEREATVATEAGSDALTPSSTVESQHCD--------------------------------------GVKVE-----------------------------GGKMSAAADGGNISADAGD--DGVAVRFDSFWDD----------PLAF-PSPPYDDGGVADDWH-----------------------------APLPSSSPATAENGPSILETARWRLIQSP-IAEMNEPREQGACSFGL-------TGTLSDAPTRPPHATAPSEPPTKSLRPMRSCSQPVSPRPEPEPETGTLLSAGGSSRGPD--EAVPLFNKMTQQELTGMMSVYGLKKKSKKEMVTRLEQIWSALHPVASSADVAAAG 939
            AK PKTE+Q  +QMA+ALSKSLV   A  V +   EE+  +E LAR+PAAF+AKE+RLV  LKDLD KLERL+KDR+ AL+KLA HR LGAR SA +              APKTA EVVD++FA+E                       R+   G+  +RG    + SP +   +  +S G ++A    G +D +S      +P+ ++         P+    EDG+                    G+   G     DGD    GD          GV +L RRRSG G    +G G  S+         R +T+W+IA+ AD LSQS FVTG FADIR  +                 VG GA          + ++VTA+AYGD  LYNRR   S A +  A   +            CSD  D D          S R Q       +D+ G    S  D  DA+ DD + LL+Q LS+                               AE+ A RHIARAPV+ +S LF +W+ENV +VFRQGA EL+ AL+ I  ALSEEE                                      ++A+AL+FF+GVIL+ALE +             + + + R          RD+G      ++ S +  R     +G   +       G D   R G+NS   S ++   P   G  + DG   + G       G++GD L  A  EA  +E+      +NN               + + +   P     S+  I+LSGDS+  A+VTFDLT+S                              G  E  V  + G        T  +++                                        GV                                     +  + G  S D+ D  D  A+  +  +DD           L+F PSP  D  GVAD+                               A    S  +T+  G  +L+  +   + SP +    E  +  A +  +        G  S A  R  H   PS PP +                  E    +  + GG+    +  E +P F +MT QEL GMM+VYGLKKKSK+EM  RLE IW  LHP A+   ++AAG
Sbjct:  302 AKTPKTEYQEHMQMARALSKSLVAPKATAVQDEASEEVCTKE-LARNPAAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKLAAHRTLGARLSAGAGGVPSESSGXXXXGAPKTAEEVVDIIFADEHGAAAAAAGIGSGARTPLRVSTSRLSEEGRAQQRGATLLSSSPSSSSPVSLLSKGTAVADAAGGGSDAASGERPTTVPRRSRRERAKGTPAPLPAPEEDGASXXXXXXXXXXXXXFVAGARGTPPSGDNPRYDGDKGCWGDDXXXXXXXXXGVGRLIRRRSGGGA---NGNGQRSTPGGDGSRARRGRTLWAIAQGADELSQSDFVTGVFADIRANSTG--------------GVGGGAGGKPHAAKPGRRAAVTAAAYGDARLYNRRVVSSAAASPSALSSTL-----------CSDQGDTDEGMGGGRPGKSEREQSASQLNPSDENGG---SGXDGDDAV-DDVIQLLSQTLSQASVSGXXXXXXXXXXXXXXXXXXXXXXXXXXAERFAARHIARAPVSSLSGLFPNWKENVGFVFRQGAAELQEALQGIVTALSEEEE-------------------------------------KEAEALVFFEGVILEALEARGP-----ACSRQLAFLGEERR---------RDDGSHSPGFEVGSPQTWRRGSEGVGIGRNGGGAVTPGSDSPPRGGANSVQDSGFALEGPEERGSERYDGGGSENGEGQARVDGESGDHLSVAD-EATGLEETHATTAENNGHDAEPAAVGTDDGDAGTQSVGHPHHGDSSVEAIVLSGDSTASAVVTFDLTSSESSKRCSSAGDIXXXXXXXXXXXXXXXXAAGLAEFPVGADGGGRNSGRGVTARARNGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRKSHRGVTASVRNCQRKXXXXXXVXXXXXXXXXXXXXXGANGPDSTDERGEASGDSDDVVDEYALEDEYGFDDHDYCAWGDENDLSFVPSPDID--GVADERQPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAADKVSHDSTSAMGAELLDLTQVAPLPSPSLRRCRESLDAAAATSPIGRGRSQHRGLESPATARRRHHCTPSSPPVEG-----------------EEGASSPTAVGGNEDIAELREVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPAAAEEGMSAAG 1411          
BLAST of mRNA_H-elongata_contig6024.13560.1 vs. uniprot
Match: D8LCH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.400e-29
Identity = 220/762 (28.87%), Postives = 294/762 (38.58%), Query Frame = 0
Query:   10 AKEPKTEFQADIQMAKALSKSLVV-SARGVGNRTEEELQDEEELARDPAAFQAKEKRLVATLKDLDQKLERLQKDREMALKKLATHRALGARTSADSKHCSMAPKTATEVVDLLFAEEQDRRVCVPGKEPRRGEKRKTLSPIAVDSLEAMSAGRSIAPEQDGTDLSSVLLPQATKPMC---------------------------------GRNEDGSDGSSSVGGGDGDIDGHGDSAGVPKLTRRRSGSGRIRRDGQGHVSSSRDKTMWSIARDADWLSQSSFVTGAFADIRVEAAAKKEARARESQEARSAVGQGAQTSSVTASAYGDPSLYNRRPAGSDAGTAGAPRR---STPGSIDIGRRGPCSDSEDAD----------STRRQRPRLWRGNDDCGVELDSEFDERDAMADDAVLLLTQILSEGHAVPRRPNKGVTNVSLEKAAASLASNSTAEKIAERHIARAPVAVVSQLFHDWEENVRYVFRQGADELRGALESINAALSEEEMAVIAAVASRNSESLDGEIAEGKCPTLEAGPTHEGAG----GEKAKALLFFKGVILDALEMKAAL----EVDLGSENDFSEVKDIRADVIERGTDVRDEGDLASVRGRRIAGRALGFADDKLPGEIS---GG--------------DVSCRNGSNSQSSWSRNIPNVGMAKEDGD----ADKEGGDAGDILGQAKGEAQNVEDGSYALGKNNSTSLAAPSPTSSTKSITTIILSGDSSRDAIVTFDLTTS 695
            AK PKTE+Q  +QMA+ALSKSLV   A  V +        EEELAR+PAAF+AKE+RLV  LKDLD KLERL+KDR+ AL+K  T R                                                                                                                            G N++G     S  GGDG                      R+RR           +T+W+IA+ AD LSQS+FVTG FADI+  +       A    +A     +  + ++VTA+AYGD  LYNRR   S A +A A      S  G ID   R   +D+ D D          S R Q       +D+ G       D  DA+ DDA+ LL+Q LS+     R       +   E +         AE+ A RHIARAPV+ +S LF +W+ENV +VFRQGA ELR AL+ I AALSE                              AGP    +G      KA+AL+FF+GV+L+ALE++          LG E+   +    R+   E G+           RG    G  +   D   PG  S   GG              + S R   +   +    +   G   EDGD    AD+  G        A+ +  + E  +      ++   +   P     S+  I+LSGDS+  A+VTFDLT+S
Sbjct:   39 AKTPKTEYQEHMQMARALSKSLVAPKATAVQDEA-----SEEELARNPAAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKRGTQRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLXXXXXXGGANDNG---QRSTPGGDGS---------------------RVRRG----------RTLWAIAQGADELSQSNFVTGVFADIKANSIGSVGGGAGGKPQA----AKPGRRAAVTAAAYGDARLYNRRVGSSAAASASALSSTLCSNRGGIDAATR--SADAADTDKGMGGGRPGKSEREQSVSQLNPSDENGG---GGGDGNDAV-DDAIQLLSQTLSQASVSGRGGTASAQDGGQENSGKK--QEEEAERSAARHIARAPVSALSGLFPNWKENVIFVFRQGAAELRLALQGIVAALSEXXXXXX----------XXXXXXXXXXXXXXAGPEGRPSGVRRRSRKAEALVFFEGVVLEALELRGPACSRRSASLGEESGREDGS--RSPGFEAGSR------QTLHRGSEGVGDGITSGDAATPGSDSPPRGGASSVQDNVFALEEQEESARKRDDGAGASEGGVGQAGGDGEDGDHLSVADEAMGFEETHAATAENDGHDAEPAAVGADDGDAGMRSVGHPHHGDSSVEAIVLSGDSTASAVVTFDLTSS 731          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6024.13560.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H1_9PHAE3.940e-4928.09Structure-specific endonuclease subunit SLX4 n=1 T... [more]
D8LCH0_ECTSI3.400e-2928.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 456..476
NoneNo IPR availableCOILSCoilCoilcoord: 63..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6024contigH-elongata_contig6024:3052..10791 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6024.13560.1mRNA_H-elongata_contig6024.13560.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6024 2201..10791 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6024.13560.1 ID=prot_H-elongata_contig6024.13560.1|Name=mRNA_H-elongata_contig6024.13560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1086bp
MRRWTKQKEAKEPKTEFQADIQMAKALSKSLVVSARGVGNRTEEELQDEE
ELARDPAAFQAKEKRLVATLKDLDQKLERLQKDREMALKKLATHRALGAR
TSADSKHCSMAPKTATEVVDLLFAEEQDRRVCVPGKEPRRGEKRKTLSPI
AVDSLEAMSAGRSIAPEQDGTDLSSVLLPQATKPMCGRNEDGSDGSSSVG
GGDGDIDGHGDSAGVPKLTRRRSGSGRIRRDGQGHVSSSRDKTMWSIARD
ADWLSQSSFVTGAFADIRVEAAAKKEARARESQEARSAVGQGAQTSSVTA
SAYGDPSLYNRRPAGSDAGTAGAPRRSTPGSIDIGRRGPCSDSEDADSTR
RQRPRLWRGNDDCGVELDSEFDERDAMADDAVLLLTQILSEGHAVPRRPN
KGVTNVSLEKAAASLASNSTAEKIAERHIARAPVAVVSQLFHDWEENVRY
VFRQGADELRGALESINAALSEEEMAVIAAVASRNSESLDGEIAEGKCPT
LEAGPTHEGAGGEKAKALLFFKGVILDALEMKAALEVDLGSENDFSEVKD
IRADVIERGTDVRDEGDLASVRGRRIAGRALGFADDKLPGEISGGDVSCR
NGSNSQSSWSRNIPNVGMAKEDGDADKEGGDAGDILGQAKGEAQNVEDGS
YALGKNNSTSLAAPSPTSSTKSITTIILSGDSSRDAIVTFDLTTSGEREA
TVATEAGSDALTPSSTVESQHCDGVKVEGGKMSAAADGGNISADAGDDGV
AVRFDSFWDDPLAFPSPPYDDGGVADDWHAPLPSSSPATAENGPSILETA
RWRLIQSPIAEMNEPREQGACSFGLTGTLSDAPTRPPHATAPSEPPTKSL
RPMRSCSQPVSPRPEPEPETGTLLSAGGSSRGPDEAVPLFNKMTQQELTG
MMSVYGLKKKSKKEMVTRLEQIWSALHPVASSADVAAAGVKSGSITPTPV
APDSALTLAAGRCNDVISRGRTSGLVTTDTARAAVRERAASRGYLAIQDG
GANGYTAPVEGRRGEVLEARPRFFSGRQGRHVRGPWLGRQDLRGWEREEE
TCYGSGEGGRGITLGDVVHPTEMRPRGSNVISARIR
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