mRNA_H-elongata_contig60.13533.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: D8LD12_ECTSI (Argininosuccinate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD12_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 5.570e-19 Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEPV 268
VRFEM QALDS ++ I P D++FL+ FK R D AYA E + SST AS +D N+YHTSY GI+E P+ PE+ K TV+P+
Sbjct: 138 VRFEMCAQALDSKITTIAPWRDAEFLEKFKGRGDLLAYATEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPL 226
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A7R9YC46_9STRA (Argininosuccinate synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC46_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.740e-16 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFEM QALD+ + I P D++FL+ FK R D AYA EH + +T A VD N+YHTSY G++E P+ +PE+ K T +P
Sbjct: 131 VRFEMCAQALDANLVTIAPWRDAEFLEKFKGRQDLLAYAAEHGIPVDATPKAPYSVDENLYHTSYESGMLEDPMTPPTPEMFKMTRDP 218
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A067D2C0_SAPPC (Argininosuccinate synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2C0_SAPPC) HSP 1 Score: 80.9 bits (198), Expect = 5.990e-16 Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFE+ QAL++++ I P D +F++ FK R D AYA+ H++ +T A VD N+YHTSY G++E P+ PE+ K TV+P
Sbjct: 131 VRFELCAQALNASLKTIAPWRDPEFIEAFKGRQDLLAYAKAHNIPVDATPKAPYSVDENLYHTSYESGMLEDPMTGPLPEMFKMTVDP 218
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A7S1UIZ0_9STRA (Argininosuccinate synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIZ0_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.330e-16 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFEM QALD+++S I P D++FL+ FK R D YA EH + +T A VD N+YHTSY G++E + PE+ K TV+P
Sbjct: 136 VRFEMCAQALDASLSTIAPWRDAEFLEKFKGRTDLLNYAAEHGIPVDATPKAPYSVDENLYHTSYESGMLEDTMVGPLPEMFKMTVDP 223
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A836CG55_9STRA (Argininosuccinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG55_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.370e-16 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFEM QALD+T++ I P + +F++ FK R+D AYA +H++ SST A+ +D N+YHTSY G++E P + K TV P
Sbjct: 134 VRFEMCAQALDATITTIAPWREPEFIERFKGRSDLLAYAAQHNIPVSSTPKANYSIDENLYHTSYESGMLEDPACAYPESMFKMTVSP 221
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A7S2B2G5_9STRA (Argininosuccinate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2G5_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.590e-15 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFEM QALD+T++ I P D +FL FK R D AYA EH++ +T A VD NI+HTS+ G++E P+ E+ K TV+P
Sbjct: 138 VRFEMNAQALDATITTIAPWRDPEFLTRFKGRTDLLAYAAEHNIPVDATPKAPYSVDENIFHTSFESGMLEDPMVSPLKEMWKMTVDP 225
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A024T7I8_9STRA (Argininosuccinate synthase (Fragment) n=13 Tax=Aphanomyces TaxID=100860 RepID=A0A024T7I8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.070e-15 Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFE+ QAL++ + I P D++F++ FK R D AYA+E ++ +T A VD N+YHTSY G++E P+ PE+ K TV+P
Sbjct: 144 VRFELCTQALNANLKTIAPWRDTEFIEKFKGRQDLIAYAKEQNIPIDATPKAPYSVDENLYHTSYESGMLEDPMTAPMPEMFKMTVDP 231
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A1V9YYF7_9STRA (Argininosuccinate synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYF7_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.910e-15 Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFE+ QAL++++ I P D++F++ FK R D AYA+E + +T A VD N+YHTSY G++E P+ PE+ K TV+P
Sbjct: 131 VRFELCAQALNASLKTIAPWRDTEFIEKFKGRQDLIAYAQEQGIPIDATPKAPYSVDENLYHTSYESGMLEDPMTGPMPEMFKMTVDP 218
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A0P1ABP3_PLAHL (Argininosuccinate synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABP3_PLAHL) HSP 1 Score: 78.2 bits (191), Expect = 5.140e-15 Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFE+ QALD+ + I P D++F++ FK RAD YA+E ++ +T A VD N+YHTSY G++E P+ E+ K TV+P
Sbjct: 131 VRFELCAQALDAQLKTIAPWRDTEFIEMFKGRADLIQYAKEQNIPIDATPKAPYSVDENLYHTSYEAGMLEDPMTAPMVEMFKMTVDP 218
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Match: A0A024FZ42_9STRA (Argininosuccinate synthase n=2 Tax=Albugo TaxID=65356 RepID=A0A024FZ42_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 5.500e-15 Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query: 2 VRFEMYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNWVDRNIYHTSYNMGIIEGPVRRSSPEILKTTVEP 265
VRFE+ QALD+ + I P D++F+ FK RAD YA E + +T AS +D N+YHTSY G++E P+ + E+ K TV+P
Sbjct: 131 VRFELCAQALDAKLQTIAPWRDAEFINQFKGRADLLKYAAEQKIPVDATPKASYSMDENLYHTSYEAGMLEDPLTAPTSEMFKMTVDP 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60.13533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60.13533.1 >prot_H-elongata_contig60.13533.1 ID=prot_H-elongata_contig60.13533.1|Name=mRNA_H-elongata_contig60.13533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp MYVQALDSTMSVITPSTDSDFLKCFKDRADFQAYAEEHDLITSSTQTASNback to top mRNA from alignment at H-elongata_contig60:28022..28982- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60.13533.1 ID=mRNA_H-elongata_contig60.13533.1|Name=mRNA_H-elongata_contig60.13533.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=961bp|location=Sequence derived from alignment at H-elongata_contig60:28022..28982- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60:28022..28982- >mRNA_H-elongata_contig60.13533.1 ID=mRNA_H-elongata_contig60.13533.1|Name=mRNA_H-elongata_contig60.13533.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig60:28022..28982- (Himanthalia elongata Himel1 dioecious)back to top |