mRNA_H-elongata_contig59962.13528.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 5.940e-29 Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 1
Query: 4 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQNKIPAIWG---VPILSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGV 507
G + +L ++++GL Q R W+ + A+GFEQ +D CVFR + DG +++VVHVDDI V + ++ A+L NK+ + G VP+ S V P +E E +P+R+ VG+LMW+AT TRPDIA+AVR VAR+C +P H + + I+ Y T ++G+
Sbjct: 1000 GMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKLGADL--NKVYGVVGGENVPMSSGVKLPDFDADEMET-DYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGI 1166
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5JHS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS1_9PHAE) HSP 1 Score: 115 bits (289), Expect = 4.990e-27 Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 4 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPAIWGVPILSKVDEPRNPEEE------EEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGV 507
G + L ++++GL Q R W+ T + +GF Q +D CVFR + DG +++VVHVDD + + + ++F A+L ++ + + + S RN E E E FP+RE VG+LMW+AT TRPDIA+AVR VAR+C +P H ++ M + Y T ++G+
Sbjct: 212 GMIVELGKSLYGLRQTSRQWHATLKRCLVELGFAQCMADACVFRLIEDGCVVLILVVHVDDTFA-MGERESCDKFGADLNKSVPVKNLGDLRCYSGCFYERNKETEYGVVGVEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWKAAMDTLGYARRTSHFGI 385
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5JKW0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 4.640e-25 Identity = 66/194 (34.02%), Postives = 100/194 (51.55%), Query Frame = 1
Query: 4 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPAIWGVPILSKVDEPRNPEEE-----------------------EEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
G + +L ++++GL Q R W+ + A+GF+Q +D CVF + DG +++VVHV DI V + ++F A+L ++ + + + + S RN E E EE FP+RE VG+LMW+AT TRPDIA+AVR VAR+C +P H + M I Y+ T GV +
Sbjct: 962 GMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFKQCMADACVFGLIEDGCVVLILVVHVADIFA-VGERERCDKFGADLNKSVPVKNLGELKLYSGCFYERNKETEYGVVGGKSVPMSSGVKLSDFDADEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKQVHWDAAMGIKGYVKRTSYMGVSF 1154
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A8H7C4J5_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7C4J5_AGABI) HSP 1 Score: 97.4 bits (241), Expect = 1.050e-21 Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 1
Query: 1 PGTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN---------------KIPAIWGVPI---LSKVDEPRNP----EEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
P V RL ++++GL Q R WN + IG+ + +SD ++ G+ +++V + +DDI K A M +EL ++ +I +IW + I L+ E N EE+ E++ PY AV AL ++ATMTRPDIA AV + RF NP P H +V + +YL+ T ++ + Y
Sbjct: 32 PNMVFRLRKSLYGLKQAARQWNKKLQSVLEGIGYSRLRSDSSIYI-YSKGDIKVIVPIFIDDITLVSKSDAAMTSAVSELSKHFKLRDLGSTTLLLGIQITSIWMMLIHFPLAPGSELSNIIPSLEEQAEMKSVPYLNAVDALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYLIGTMHYKLVY 223
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 3.540e-21 Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 1
Query: 4 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQNKIPAIWGVPILSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
G + +L ++++GL Q R W+ + +GF Q +D CVFR + DG +++VVHV G + + AT P+ K+ + +E E P+RE VG+LMW+AT TRPDIA+AVR VAR+C +P H ++ + I+ Y+ T G+ +
Sbjct: 66 GLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHV----GFLMWLATX------------------PVSVKLTDF---DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITF 210
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A8J6HDY0_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HDY0_TENMO) HSP 1 Score: 97.4 bits (241), Expect = 2.280e-20 Identity = 63/190 (33.16%), Postives = 100/190 (52.63%), Query Frame = 1
Query: 4 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPA-----IWGVPI--------------LSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
G V RL ++++GL Q CWN F + + +GF ++++DPC+F G ++ V++VDD L + + +F +LG+ KIPA G+ I + + + + EE +FPYR+AVGALM++ TRPDIA A+ V+R +NP V +I++YL T N G+ Y
Sbjct: 631 GRVCRLKKSLYGLKQAPCCWNEKFSNYIIKLGFRRSEADPCLFVRQ-KGSTKMFFVLYVDDGLIAGNDEQELQQFIDDLGRKFKIPAKPASLFLGLEINQEERFNMSNCKAVTTPIVKDNDTEESSRNSEFPYRQAVGALMFLMCGTRPDIAYALSVVSRNLENPTDRDIVRVKRILRYLRGTTNCGLLY 819
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A4S4KGQ1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KGQ1_9APHY) HSP 1 Score: 95.5 bits (236), Expect = 5.710e-20 Identity = 61/189 (32.28%), Postives = 99/189 (52.38%), Query Frame = 1
Query: 16 RLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVV-VHVDDILGHVKYKATMNRFAAELGQN---------------------------KIPAIWGVPILSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKN 498
RL +A++GL Q G+ W C +A +GF A++D VF V E +++V+ +HVDD + AT++ + ++G+ IP +P LSK P + ++K PY+EA+G+LM++A TRPDI AV T+A+F +NPG H +V ++ +YLL T++
Sbjct: 78 RLWKALYGLKQGGQKWYEHLCVALADLGFRHAEADYGVF--FVQNEPDLMVLAIHVDDCIITGSSTATLSDYKLKIGEKYQMTDLGPHAYIDTILTHFNFTNLRPISIPMDLNIP-LSKSQCPTALTDIARMKKIPYQEAIGSLMYVAVCTRPDIVFAVSTLAQFSENPGWVHWEAVKRVFRYLLGTRD 263
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: H3GJA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA9_PHYRM) HSP 1 Score: 95.5 bits (236), Expect = 1.080e-19 Identity = 59/187 (31.55%), Postives = 96/187 (51.34%), Query Frame = 1
Query: 19 LSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDIL---------GHVKYKATMNRFAAELGQNKIPAIWGVPILSKVDEP-------------RNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
L +A++G Q R WN+ + GF ++ +DPCV+ D + I++V +VDD++ G +K ELG+ K G+ I D+ + E+E+ + ++PYRE VGALM++AT TRPDIA AV VA+FC+ H + +I++YL T++ G+ +
Sbjct: 930 LVQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFSIIIV-YVDDLMIFSRTKAEIGEIKKPLKREFSIKELGELKY--CLGIEIHRNRDDKTIVMNQRANSKLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHWVAAKRILKYLKTTQDLGLVF 1113
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5K1X1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.570e-19 Identity = 59/189 (31.22%), Postives = 95/189 (50.26%), Query Frame = 1
Query: 4 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQ-----NKIPAIWGVPILSKVDEPRN----PEEEEEIRKF---------PYREAVGALM-WMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
G + +L ++++GL Q R W+ + +G Q +D CVFR + +G +++VVHVDDI K ++F +L + N W + D R ++ ++ F P+RE VG+LM W+AT TRPDIA+AVR VAR+C +P H + + I+ Y+ T G+ +
Sbjct: 66 GLILKLCKSLYGLKQASRHWHAHLTRCLLLLGLLQCLADACVFRLMEEGNVVMIIVVHVDDIFA-AGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERDVERGLLKISQQSVKLSDFDVNEASADVPFRELVGSLMMWLATQTRPDIANAVRAVARYCASPKMVHWTAALGILGYVRRTSWMGITF 253
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A7D9EW89_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EW89_PARCT) HSP 1 Score: 94.0 bits (232), Expect = 3.640e-19 Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 1
Query: 10 VGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPAIWGVPILSKVDEPRNPEEEEEIRK----FPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 513
V L ++++GL Q RCWN +F + M + GFEQ+ +DPCVF V+ + IV V HVDD++ + + M A L K+ + P+ + +D +++ K Y+ VG+ ++ A TRPDIA AV T+A+F +P H +V +I +YL T ++Y
Sbjct: 692 VCHLKKSLYGLKQSPRCWNKSFKEFMISQGFEQSAADPCVFIRKVNDQLAIVAV-HVDDLILLTETEQEMIDLKASLAARFKMKDMDCKPVSTPMDMNVKLVKDDGYSKAVDPVEYQSMVGSFIYAAITTRPDIAHAVGTLAKFNSSPNEAHLTAVKRIFRYLKGTVKLHLQY 863 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59962.13528.1 >prot_H-elongata_contig59962.13528.1 ID=prot_H-elongata_contig59962.13528.1|Name=mRNA_H-elongata_contig59962.13528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp PGTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGback to top mRNA from alignment at H-elongata_contig59962:1875..2528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59962.13528.1 ID=mRNA_H-elongata_contig59962.13528.1|Name=mRNA_H-elongata_contig59962.13528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig59962:1875..2528- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59962:1875..2528- >mRNA_H-elongata_contig59962.13528.1 ID=mRNA_H-elongata_contig59962.13528.1|Name=mRNA_H-elongata_contig59962.13528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig59962:1875..2528- (Himanthalia elongata Himel1 dioecious)back to top |