prot_H-elongata_contig59962.13528.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59962.13528.1
Unique Nameprot_H-elongata_contig59962.13528.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length171
Homology
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.940e-29
Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 0
Query:    2 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQNKIPAIWG---VPILSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGV 169
            G + +L ++++GL Q  R W+      + A+GFEQ  +D CVFR + DG   +++VVHVDDI   V  +   ++  A+L  NK+  + G   VP+ S V  P    +E E   +P+R+ VG+LMW+AT TRPDIA+AVR VAR+C +P   H  + + I+ Y   T ++G+
Sbjct: 1000 GMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKLGADL--NKVYGVVGGENVPMSSGVKLPDFDADEMET-DYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGI 1166          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5JHS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.990e-27
Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 0
Query:    2 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPAIWGVPILSKVDEPRNPEEE------EEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGV 169
            G +  L ++++GL Q  R W+ T    +  +GF Q  +D CVFR + DG   +++VVHVDD    +  + + ++F A+L ++  +  +  +   S     RN E E      E    FP+RE VG+LMW+AT TRPDIA+AVR VAR+C +P   H ++ M  + Y   T ++G+
Sbjct:  212 GMIVELGKSLYGLRQTSRQWHATLKRCLVELGFAQCMADACVFRLIEDGCVVLILVVHVDDTFA-MGERESCDKFGADLNKSVPVKNLGDLRCYSGCFYERNKETEYGVVGVEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWKAAMDTLGYARRTSHFGI 385          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5JKW0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.640e-25
Identity = 66/194 (34.02%), Postives = 100/194 (51.55%), Query Frame = 0
Query:    2 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPAIWGVPILSKVDEPRNPEEE-----------------------EEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            G + +L ++++GL Q  R W+      + A+GF+Q  +D CVF  + DG   +++VVHV DI   V  +   ++F A+L ++  +  +  + + S     RN E E                       EE   FP+RE VG+LMW+AT TRPDIA+AVR VAR+C +P   H  + M I  Y+  T   GV +
Sbjct:  962 GMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFKQCMADACVFGLIEDGCVVLILVVHVADIFA-VGERERCDKFGADLNKSVPVKNLGELKLYSGCFYERNKETEYGVVGGKSVPMSSGVKLSDFDADEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKQVHWDAAMGIKGYVKRTSYMGVSF 1154          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A8H7C4J5_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7C4J5_AGABI)

HSP 1 Score: 97.4 bits (241), Expect = 1.050e-21
Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 0
Query:    1 PGTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN---------------KIPAIWGVPI---LSKVDEPRNP----EEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            P  V RL ++++GL Q  R WN      +  IG+ + +SD  ++     G+ +++V + +DDI    K  A M    +EL ++               +I +IW + I   L+   E  N     EE+ E++  PY  AV AL ++ATMTRPDIA AV  + RF  NP P H  +V  + +YL+ T ++ + Y
Sbjct:   32 PNMVFRLRKSLYGLKQAARQWNKKLQSVLEGIGYSRLRSDSSIYI-YSKGDIKVIVPIFIDDITLVSKSDAAMTSAVSELSKHFKLRDLGSTTLLLGIQITSIWMMLIHFPLAPGSELSNIIPSLEEQAEMKSVPYLNAVDALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYLIGTMHYKLVY 223          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.540e-21
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 0
Query:    2 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQNKIPAIWGVPILSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            G + +L ++++GL Q  R W+      +  +GF Q  +D CVFR + DG   +++VVHV    G + + AT                   P+  K+ +    +E E     P+RE VG+LMW+AT TRPDIA+AVR VAR+C +P   H ++ + I+ Y+  T   G+ +
Sbjct:   66 GLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHV----GFLMWLATX------------------PVSVKLTDF---DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITF 210          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A8J6HDY0_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HDY0_TENMO)

HSP 1 Score: 97.4 bits (241), Expect = 2.280e-20
Identity = 63/190 (33.16%), Postives = 100/190 (52.63%), Query Frame = 0
Query:    2 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPA-----IWGVPI--------------LSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            G V RL ++++GL Q   CWN  F + +  +GF ++++DPC+F     G  ++  V++VDD L     +  + +F  +LG+  KIPA       G+ I               + + +  + EE     +FPYR+AVGALM++   TRPDIA A+  V+R  +NP       V +I++YL  T N G+ Y
Sbjct:  631 GRVCRLKKSLYGLKQAPCCWNEKFSNYIIKLGFRRSEADPCLFVRQ-KGSTKMFFVLYVDDGLIAGNDEQELQQFIDDLGRKFKIPAKPASLFLGLEINQEERFNMSNCKAVTTPIVKDNDTEESSRNSEFPYRQAVGALMFLMCGTRPDIAYALSVVSRNLENPTDRDIVRVKRILRYLRGTTNCGLLY 819          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A4S4KGQ1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KGQ1_9APHY)

HSP 1 Score: 95.5 bits (236), Expect = 5.710e-20
Identity = 61/189 (32.28%), Postives = 99/189 (52.38%), Query Frame = 0
Query:    6 RLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVV-VHVDDILGHVKYKATMNRFAAELGQN---------------------------KIPAIWGVPILSKVDEPRNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKN 166
            RL +A++GL Q G+ W    C  +A +GF  A++D  VF   V  E +++V+ +HVDD +      AT++ +  ++G+                             IP    +P LSK   P    +   ++K PY+EA+G+LM++A  TRPDI  AV T+A+F +NPG  H  +V ++ +YLL T++
Sbjct:   78 RLWKALYGLKQGGQKWYEHLCVALADLGFRHAEADYGVF--FVQNEPDLMVLAIHVDDCIITGSSTATLSDYKLKIGEKYQMTDLGPHAYIDTILTHFNFTNLRPISIPMDLNIP-LSKSQCPTALTDIARMKKIPYQEAIGSLMYVAVCTRPDIVFAVSTLAQFSENPGWVHWEAVKRVFRYLLGTRD 263          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: H3GJA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA9_PHYRM)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-19
Identity = 59/187 (31.55%), Postives = 96/187 (51.34%), Query Frame = 0
Query:    7 LSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDIL---------GHVKYKATMNRFAAELGQNKIPAIWGVPILSKVDEP-------------RNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            L +A++G  Q  R WN+     +   GF ++ +DPCV+    D +  I++V +VDD++         G +K          ELG+ K     G+ I    D+              +  E+E+ + ++PYRE VGALM++AT TRPDIA AV  VA+FC+     H  +  +I++YL  T++ G+ +
Sbjct:  930 LVQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFSIIIV-YVDDLMIFSRTKAEIGEIKKPLKREFSIKELGELKY--CLGIEIHRNRDDKTIVMNQRANSKLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHWVAAKRILKYLKTTQDLGLVF 1113          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A6H5K1X1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.570e-19
Identity = 59/189 (31.22%), Postives = 95/189 (50.26%), Query Frame = 0
Query:    2 GTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQ-----NKIPAIWGVPILSKVDEPRN----PEEEEEIRKF---------PYREAVGALM-WMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            G + +L ++++GL Q  R W+      +  +G  Q  +D CVFR + +G   +++VVHVDDI      K   ++F  +L +     N     W      + D  R      ++  ++  F         P+RE VG+LM W+AT TRPDIA+AVR VAR+C +P   H  + + I+ Y+  T   G+ +
Sbjct:   66 GLILKLCKSLYGLKQASRHWHAHLTRCLLLLGLLQCLADACVFRLMEEGNVVMIIVVHVDDIFA-AGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERDVERGLLKISQQSVKLSDFDVNEASADVPFRELVGSLMMWLATQTRPDIANAVRAVARYCASPKMVHWTAALGILGYVRRTSWMGITF 253          
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Match: A0A7D9EW89_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EW89_PARCT)

HSP 1 Score: 94.0 bits (232), Expect = 3.640e-19
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 0
Query:    4 VGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDGEAEIVVVVHVDDILGHVKYKATMNRFAAELGQN-KIPAIWGVPILSKVDEPRNPEEEEEIRK----FPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGHKRSVMKIMQYLLHTKNWGVEY 171
            V  L ++++GL Q  RCWN +F + M + GFEQ+ +DPCVF   V+ +  IV V HVDD++   + +  M    A L    K+  +   P+ + +D      +++   K      Y+  VG+ ++ A  TRPDIA AV T+A+F  +P   H  +V +I +YL  T    ++Y
Sbjct:  692 VCHLKKSLYGLKQSPRCWNKSFKEFMISQGFEQSAADPCVFIRKVNDQLAIVAV-HVDDLILLTETEQEMIDLKASLAARFKMKDMDCKPVSTPMDMNVKLVKDDGYSKAVDPVEYQSMVGSFIYAAITTRPDIAHAVGTLAKFNSSPNEAHLTAVKRIFRYLKGTVKLHLQY 863          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59962.13528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6V8_9PHAE5.940e-2939.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHS1_9PHAE4.990e-2736.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKW0_9PHAE4.640e-2534.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7C4J5_AGABI1.050e-2132.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJP2_9PHAE3.540e-2133.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6HDY0_TENMO2.280e-2033.16Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A4S4KGQ1_9APHY5.710e-2032.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GJA9_PHYRM1.080e-1931.55Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6H5K1X1_9PHAE1.570e-1931.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9EW89_PARCT3.640e-1933.53Retrovirus-related Pol poly from transposon TNT 1-... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..81
e-value: 1.2E-8
score: 35.0
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 6..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59962contigH-elongata_contig59962:1875..2528 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59962.13528.1mRNA_H-elongata_contig59962.13528.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59962 1875..2528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59962.13528.1 ID=prot_H-elongata_contig59962.13528.1|Name=mRNA_H-elongata_contig59962.13528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
PGTVGRLSEAIFGLVQVGRCWNNTFCDDMAAIGFEQAKSDPCVFRNVVDG
EAEIVVVVHVDDILGHVKYKATMNRFAAELGQNKIPAIWGVPILSKVDEP
RNPEEEEEIRKFPYREAVGALMWMATMTRPDIASAVRTVARFCKNPGPGH
KRSVMKIMQYLLHTKNWGVEY
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2