mRNA_H-elongata_contig59886.13518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59886.13518.1
Unique NamemRNA_H-elongata_contig59886.13518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A6H5JFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.860e-36
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    1 MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQ 243
            MSE + L N +LRQV+VVIGK LIRDQVTVEYASRIRRLVQG+KSGRL+PDLVCFTGG VRDN+VA ASAGY+FFRHLCEQ
Sbjct:  369 MSEDDQLLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQ 449          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.600e-35
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
            MSE + L N +LRQV+VVIGK LIRDQVTVEYASRIRRLVQG+KSGRL+PDLVCFTGG VRDN+VA ASAGYVFFRHLCEQ  V
Sbjct:  356 MSEDDQLLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYVFFRHLCEQHEV 439          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: M1UUY3_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUY3_CYAM1)

HSP 1 Score: 87.0 bits (214), Expect = 4.230e-18
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVR-DNKVAIASAGYVFFRHLCEQQGVS 255
            +S   ++ N   R+V+V+ GK L+RDQ+T EYA RI  LV+ M +GR++P  VCFTGG+   D+ V+ A AGY+FFRH+CE+  +S
Sbjct:  200 LSGSVVVQNSPFREVVVIFGKRLVRDQITYEYAVRILTLVRHMVTGRIKPSAVCFTGGRDHPDSLVSEAVAGYLFFRHVCEEFSIS 285          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7J7IM92_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM92_9RHOD)

HSP 1 Score: 85.1 bits (209), Expect = 2.000e-17
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   37 RQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVR-DNKVAIASAGYVFFRHLCEQQGV 252
            R+V+V+ GK L+RDQ+T EYA RI  LV+ M +GR++P  VCFTGG+   D+ V+ A AGY+FFRH+CE+ G+
Sbjct:  200 REVVVIFGKRLVRDQITYEYAVRILTLVRHMATGRIQPSAVCFTGGRDHEDSLVSEAVAGYLFFRHVCEEVGL 272          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: B7GC13_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC13_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 2.640e-17
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   37 RQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGVS 255
            RQV +V+ K L +DQVTVEYA+RIRRL++ M      PD +CF GG    NK+A A AGY++FR+LC  Q +S
Sbjct:  194 RQVAIVLSKSLQKDQVTVEYANRIRRLLKAMLEEDYHPDAICFVGGTSTGNKIADADAGYIYFRYLCACQNIS 266          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7S1TFF2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFF2_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 3.870e-17
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   22 HNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDN-KVAIASAGYVFFRHLCEQQGV 252
            H      V VV+GK LIRDQVT E+A RI  LV+ +K G+L+PD+VCFTGG+  +N   + A+AGY+FFR LCEQ  V
Sbjct:   40 HLSSTTHVAVVLGKRLIRDQVTKEFARRITTLVKQIKVGQLKPDVVCFTGGRSEENASTSQAAAGYMFFRSLCEQAEV 117          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7S4M5J4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M5J4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.750e-16
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   43 VMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRL-RPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
            V VV GK L+RDQ+TVEYASRIR L +  K   L RP LVCF GG    N V+ A AGY+FFRH+CE Q +
Sbjct:   85 VAVVFGKRLVRDQITVEYASRIRTLARLFKEEPLFRPSLVCFCGGVGPGNHVSDADAGYIFFRHMCEAQNI 155          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: K0TG42_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TG42_THAOC)

HSP 1 Score: 81.6 bits (200), Expect = 3.300e-16
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   22 HNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
            HN     + +V GK LI DQV+VEYA R+R L + +     +P L+CFTGG    N V+ ASAG+V+F HLC  QG+
Sbjct:  297 HNSTTYHIAIVFGKALICDQVSVEYAGRLRTLAKMLHDDDFQPSLICFTGGISEGNSVSDASAGFVYFNHLCSAQGI 373          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: B8C0Y5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0Y5_THAPS)

HSP 1 Score: 81.3 bits (199), Expect = 4.500e-16
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   25 NRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSG-RLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
            N     V +V GK LIRDQVTVEYA+R+R L + +K     RP L+CFTGG    N V+ A+AGY++FRHLC  QG+
Sbjct:  302 NSTTYHVAIVFGKPLIRDQVTVEYATRLRTLAKLLKEEPNFRPKLICFTGGVSEGNVVSDATAGYLYFRHLCVCQGI 378          
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7R9U259_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U259_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.870e-16
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   43 VMVVIGKLLIRDQVTVEYASRIRRLVQGMK----SGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
            V+V  GK L+RDQVT+EYASRIR +V+ +K    +G   PD++CFTGG + D+ ++ A+AGY+FFR + E  GV
Sbjct:  162 VLVCFGKRLVRDQVTLEYASRIRTMVKYLKRLHNTGHKLPDVICFTGGYMGDSAISSATAGYIFFRQMAEYAGV 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JFC6_9PHAE5.860e-3682.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW21_ECTSI1.600e-3582.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M1UUY3_CYAM14.230e-1848.84Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7J7IM92_9RHOD2.000e-1754.79Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
B7GC13_PHATC2.640e-1753.42Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1TFF2_9RHOD3.870e-1755.13Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S4M5J4_9STRA1.750e-1659.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0TG42_THAOC3.300e-1648.05Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8C0Y5_THAPS4.500e-1653.25Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9U259_9STRA5.870e-1651.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59886contigH-elongata_contig59886:2614..3321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.5e-29
Seed eggNOG ortholog2880.D7FW21
EggNOG OGs2CY8W@1,2S2UA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.9045494-CDS-H-elongata_contig59886:2613..26941622930969.9045494-CDS-H-elongata_contig59886:2613..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59886 2614..2694 +
1691679645.0107439-CDS-H-elongata_contig59886:2613..26941691679645.0107439-CDS-H-elongata_contig59886:2613..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59886 2614..2694 +
1622930969.9216185-CDS-H-elongata_contig59886:3147..33211622930969.9216185-CDS-H-elongata_contig59886:3147..3321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59886 3148..3321 +
1691679645.0213342-CDS-H-elongata_contig59886:3147..33211691679645.0213342-CDS-H-elongata_contig59886:3147..3321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59886 3148..3321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59886.13518.1prot_H-elongata_contig59886.13518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59886 2614..3321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59886.13518.1

>prot_H-elongata_contig59886.13518.1 ID=prot_H-elongata_contig59886.13518.1|Name=mRNA_H-elongata_contig59886.13518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRP
DLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGVS
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mRNA from alignment at H-elongata_contig59886:2614..3321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59886.13518.1 ID=mRNA_H-elongata_contig59886.13518.1|Name=mRNA_H-elongata_contig59886.13518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig59886:2614..3321+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGCAAAATCTTCTTCACAATCGAGATCTGCGGCAAGTCATGGT GGTGATTGGCAAGCTTTTGATCAGGGATCAGGTGCGCGCATTTCGCCTGA GCGCACCGCTATCCGCAAGTTCGGTATCCGTGGTACCTGGTATCTCTTTT TCAAGCACGGCCGTGAACATGCCTGTCCGGGTCTGGCCCGGGATCGCGTG GCATGGCGAGTGGATCTCGTACAAATCACGGTCGCCGCGTGATTTACCCT GAATTATATATTTGGAATAAGATATGGCTCGTACATCGTCTGCAAAGTCA TGGCACGCATGCATGTCGTCTCGTACATAAATATATATAGCTTTGACGGT GAATGGTTTCTGAGTGGCGAGGATCGTGCAGCCTGTACCGATGACCCGAT CGCATCTCCGCTTACGAACGACCACCACACGAAGTTGTCAAACGACGGGA CCCCTAATCGTCCACGCGTACCCCCAACCCCCCTCCTTGCTGATTTTTCT GGGTCTCTCTTCGATGCGTTTCGAGCGATGAAAGGTGACGGTGGAGTACG CCTCTCGCATCAGGCGCCTGGTTCAAGGTATGAAGTCCGGCCGACTGCGG CCCGACCTGGTGTGCTTCACGGGGGGGCAAGTGCGGGACAACAAGGTAGC AATAGCCTCGGCCGGGTACGTCTTCTTCAGGCACCTGTGCGAGCAGCAAG GGGTGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig59886:2614..3321+

>mRNA_H-elongata_contig59886.13518.1 ID=mRNA_H-elongata_contig59886.13518.1|Name=mRNA_H-elongata_contig59886.13518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig59886:2614..3321+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGCAAAATCTTCTTCACAATCGAGATCTGCGGCAAGTCATGGT
GGTGATTGGCAAGCTTTTGATCAGGGATCAGATGTCCGAGCAAAATCTTC
TTCACAATCGAGATCTGCGGCAAGTCATGGTGGTGATTGGCAAGCTTTTG
ATCAGGGATCAGGTGACGGTGGAGTACGCCTCTCGCATCAGGCGCCTGGT
TCAAGGTATGAAGTCCGGCCGACTGCGGCCCGACCTGGTGTGCTTCACGG
GGGGGCAAGTGCGGGACAACAAGGTAGCAATAGCCTCGGCCGGGTACGTC
TTCTTCAGGCACCTGTGCGAGCAGCAAGGGGTGAGTGTGACGGTGGAGTA
CGCCTCTCGCATCAGGCGCCTGGTTCAAGGTATGAAGTCCGGCCGACTGC
GGCCCGACCTGGTGTGCTTCACGGGGGGGCAAGTGCGGGACAACAAGGTA
GCAATAGCCTCGGCCGGGTACGTCTTCTTCAGGCACCTGTGCGAGCAGCA
AGGGGTGAGT
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