mRNA_H-elongata_contig59886.13518.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A6H5JFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC6_9PHAE) HSP 1 Score: 135 bits (340), Expect = 5.860e-36 Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 1
Query: 1 MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQ 243
MSE + L N +LRQV+VVIGK LIRDQVTVEYASRIRRLVQG+KSGRL+PDLVCFTGG VRDN+VA ASAGY+FFRHLCEQ
Sbjct: 369 MSEDDQLLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQ 449
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.600e-35 Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 1
Query: 1 MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
MSE + L N +LRQV+VVIGK LIRDQVTVEYASRIRRLVQG+KSGRL+PDLVCFTGG VRDN+VA ASAGYVFFRHLCEQ V
Sbjct: 356 MSEDDQLLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYVFFRHLCEQHEV 439
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: M1UUY3_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUY3_CYAM1) HSP 1 Score: 87.0 bits (214), Expect = 4.230e-18 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 1 MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVR-DNKVAIASAGYVFFRHLCEQQGVS 255
+S ++ N R+V+V+ GK L+RDQ+T EYA RI LV+ M +GR++P VCFTGG+ D+ V+ A AGY+FFRH+CE+ +S
Sbjct: 200 LSGSVVVQNSPFREVVVIFGKRLVRDQITYEYAVRILTLVRHMVTGRIKPSAVCFTGGRDHPDSLVSEAVAGYLFFRHVCEEFSIS 285
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7J7IM92_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM92_9RHOD) HSP 1 Score: 85.1 bits (209), Expect = 2.000e-17 Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 37 RQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVR-DNKVAIASAGYVFFRHLCEQQGV 252
R+V+V+ GK L+RDQ+T EYA RI LV+ M +GR++P VCFTGG+ D+ V+ A AGY+FFRH+CE+ G+
Sbjct: 200 REVVVIFGKRLVRDQITYEYAVRILTLVRHMATGRIQPSAVCFTGGRDHEDSLVSEAVAGYLFFRHVCEEVGL 272
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: B7GC13_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC13_PHATC) HSP 1 Score: 84.7 bits (208), Expect = 2.640e-17 Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 37 RQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGVS 255
RQV +V+ K L +DQVTVEYA+RIRRL++ M PD +CF GG NK+A A AGY++FR+LC Q +S
Sbjct: 194 RQVAIVLSKSLQKDQVTVEYANRIRRLLKAMLEEDYHPDAICFVGGTSTGNKIADADAGYIYFRYLCACQNIS 266
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7S1TFF2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFF2_9RHOD) HSP 1 Score: 84.0 bits (206), Expect = 3.870e-17 Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 22 HNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDN-KVAIASAGYVFFRHLCEQQGV 252
H V VV+GK LIRDQVT E+A RI LV+ +K G+L+PD+VCFTGG+ +N + A+AGY+FFR LCEQ V
Sbjct: 40 HLSSTTHVAVVLGKRLIRDQVTKEFARRITTLVKQIKVGQLKPDVVCFTGGRSEENASTSQAAAGYMFFRSLCEQAEV 117
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7S4M5J4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M5J4_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.750e-16 Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 43 VMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRL-RPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
V VV GK L+RDQ+TVEYASRIR L + K L RP LVCF GG N V+ A AGY+FFRH+CE Q +
Sbjct: 85 VAVVFGKRLVRDQITVEYASRIRTLARLFKEEPLFRPSLVCFCGGVGPGNHVSDADAGYIFFRHMCEAQNI 155
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: K0TG42_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TG42_THAOC) HSP 1 Score: 81.6 bits (200), Expect = 3.300e-16 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 22 HNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
HN + +V GK LI DQV+VEYA R+R L + + +P L+CFTGG N V+ ASAG+V+F HLC QG+
Sbjct: 297 HNSTTYHIAIVFGKALICDQVSVEYAGRLRTLAKMLHDDDFQPSLICFTGGISEGNSVSDASAGFVYFNHLCSAQGI 373
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: B8C0Y5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0Y5_THAPS) HSP 1 Score: 81.3 bits (199), Expect = 4.500e-16 Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 25 NRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSG-RLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
N V +V GK LIRDQVTVEYA+R+R L + +K RP L+CFTGG N V+ A+AGY++FRHLC QG+
Sbjct: 302 NSTTYHVAIVFGKPLIRDQVTVEYATRLRTLAKLLKEEPNFRPKLICFTGGVSEGNVVSDATAGYLYFRHLCVCQGI 378
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Match: A0A7R9U259_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U259_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 5.870e-16 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 43 VMVVIGKLLIRDQVTVEYASRIRRLVQGMK----SGRLRPDLVCFTGGQVRDNKVAIASAGYVFFRHLCEQQGV 252
V+V GK L+RDQVT+EYASRIR +V+ +K +G PD++CFTGG + D+ ++ A+AGY+FFR + E GV
Sbjct: 162 VLVCFGKRLVRDQVTLEYASRIRTMVKYLKRLHNTGHKLPDVICFTGGYMGDSAISSATAGYIFFRQMAEYAGV 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59886.13518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59886.13518.1 >prot_H-elongata_contig59886.13518.1 ID=prot_H-elongata_contig59886.13518.1|Name=mRNA_H-elongata_contig59886.13518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp MSEQNLLHNRDLRQVMVVIGKLLIRDQVTVEYASRIRRLVQGMKSGRLRPback to top mRNA from alignment at H-elongata_contig59886:2614..3321+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59886.13518.1 ID=mRNA_H-elongata_contig59886.13518.1|Name=mRNA_H-elongata_contig59886.13518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig59886:2614..3321+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59886:2614..3321+ >mRNA_H-elongata_contig59886.13518.1 ID=mRNA_H-elongata_contig59886.13518.1|Name=mRNA_H-elongata_contig59886.13518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig59886:2614..3321+ (Himanthalia elongata Himel1 dioecious)back to top |