mRNA_H-elongata_contig59760.13492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59760.13492.1
Unique NamemRNA_H-elongata_contig59760.13492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 2.210e-71
Identity = 125/233 (53.65%), Postives = 157/233 (67.38%), Query Frame = 1
Query:    1 LRQTQLCLDVLPPHRARLPAFCVPGSFHRGSAHDLQWLPYACCPRGVRAGTCC-------GKYRGVSWAGAGFVFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPAD--RRCWCIEMCRGFGQGWKNGHSIFTWADKGEW-KCRDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLVS 669
            L Q QL +D+LPP  A  PA  +PGS +   +HD Q L       G   G C        G  R +      F+FPI ++ YVGRIVW RV+PQ  P+ F    +P +  +RCWC+ +CRGF  GW+NGHSIF WADKG W   +DE+ DL+ R FRIGFEPLFVD+T++GAVYI FLL KWFA+G+ AGLVT GTVQT+ L ++YL+DI LLC LRPFSNS +QW+ETVLV+
Sbjct: 1110 LSQAQLGVDILPPRGAGFPALRLPGSVNLRGSHDQQRL----LASGGAGGVCAVLPSVRHGLVRRM--VRRKFIFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEGRKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVT 1336          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.360e-61
Identity = 95/162 (58.64%), Postives = 122/162 (75.31%), Query Frame = 1
Query:  217 VLYVGRIVWKRVQPQTAPIVFHAVDSPAD----------RRCWCIEMCRGFGQGWKNGHSIFTWADKGEW-KCRDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLVS 669
            + YVGRIVW RV+PQ  P+ F    +PA           +RCWC+ +C+GF  GW+NGHS+F WADKG W   +DE+ DLD R FRIGFEPLFVD+T++GAVYI FL+ KWFA+ V AGLVT GTVQT+ L ++YL+D+ LLC+LRPFSNS +QW+ET+LV+
Sbjct:    1 MFYVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVT 162          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.820e-44
Identity = 76/157 (48.41%), Postives = 110/157 (70.06%), Query Frame = 1
Query:  199 VFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQE-DLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLV 666
            VFP++M +YV RIVW RV+P  +P+ +   +  A + C+  + C GF + W +G S+F WADKG+W  ++ ++ DLD R FRIGFEPLFVDYT+KG +Y+TFLL +W + G+ AG VT GT+QT  +  +Y++D ++L  L+PFSNS IQ   T+ V
Sbjct:  723 VFPVLMFIYVSRIVWSRVRPDNSPLRYEP-NPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTV 878          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.000e-43
Identity = 83/198 (41.92%), Postives = 123/198 (62.12%), Query Frame = 1
Query:   76 SFHRGSAHDLQWLPYACCPRGVRAGTCCGKYRGVSWAGAGFVFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQE-DLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLV 666
            ++   SA + + +   C P  V  G C           A  VFP++M +YV RIVW RV+P  +P+ +   +  A + C+  + C GF + W +G S+F WA+KG+W  ++ ++ DLD R FRIGFEPLFVDYT+KG +Y+TFLL +W + G+ AG VT GT+QT  +  +Y++D ++L  L+PFSNS IQ   T+ V
Sbjct: 1017 AYQGASAAEARMIYSGCFPL-VVMGVC-----------ALIVFPVLMFIYVSRIVWSRVRPDNSPLRYEP-NPNAGKGCFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTV 1201          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.360e-22
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  184 AGAGFVF-PIVMVLYVGRIVWKRVQPQTAPIVF----------HAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQED---LDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQ 645
            AG   VF PI+M + V R  + RV+P T  IVF           A D+   +R            GW+  HS+F WA+KG W+  +   +    +G+ FRIGFEPLFVD+T+ GA ++ F L +W A+G    L+ +  +Q S+   L+ +  +LL + RPF+NS I 
Sbjct: 1072 AGLALVFYPILMFVAVLRTFFVRVRPNTL-IVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVIN 1238          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5KV63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV63_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.580e-18
Identity = 58/172 (33.72%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  184 AGAGFVF-PIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQED---LDGRMFRIGFEPLFVDYTRKGAVYITFLL------------------CKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSN 633
            AG   VF PI+M + V R  + RV+P T PIVF             +   R    GW+  HS+F WA+KG W+  +   +    +G+ FRIGFEPLFVD+T+ GA ++ F L                   +W A+G    L+ +  +Q S+   L+ +  +LL + RPF+N
Sbjct:  213 AGLALVFYPILMFVAVLRTFFVRVRPNT-PIVF-------------LSKVRA---GWEEDHSLFAWANKGTWETAETDNEGIRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEGCLGLGHAVSFLLIYFAQWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFAN 367          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.930e-17
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  199 VFPIVMVLYVGRIVWKRVQPQTAPIVF--HAVDSP-ADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKC---RDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIE 654
            ++P++M + V R +  RV+P    ++F  +A D    D       +   F   W   +S+F+WADKG+W+     D Q   +G  FRIGFEP+FVDYT++G  +I   L +W A      ++    VQ  +   L+ +   +L  L+PF+NS I  IE
Sbjct: 1437 LYPLLMFVTVFRTLLVRVRPNVL-LIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIE 1593          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.880e-16
Identity = 52/165 (31.52%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  199 VFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRG-----FGQGWKNGHSIFTWADKGEWKC---RDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLVS 669
            ++P++M   V R ++ RV+P    ++F   D   D        CRG     F   W   +S+F+WADKG+W+     +     +G  FRIGFEP+FVDYT++G  +I   L +W ++ +   ++    VQ  +   L     ++L  L+PF+NS I  I   +V+
Sbjct: 1618 LYPLLMFATVVRTLFVRVRPDEL-LIFKTYDE--DGTNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVA 1779          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 9.250e-16
Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  199 VFPIVMVLYVGRIVWKRVQPQTAPIVF--------HAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKC---RDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQ 645
            V+P++M++   R    RV P T  IVF        H  D    R             G K  HS+F WA+ G W+     DE+   +G  FRIGFEPLFVD+T+K + +  + L +   +  TA LV    VQ  +   L+ +  +LL I RPF+NS I 
Sbjct:  304 VYPVLMIILSYRTHRVRVAPDTL-IVFKPVGEEENHGTDGTVPR-----SFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIIN 457          
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-14
Identity = 49/157 (31.21%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  199 VFPIVMVLYVGRIVWKRVQPQTAP-IVFHAVDSPADRRCWCIEMCRGF----GQGWKNGHSIFTWADKGEWKCRDEQEDLDGRM---FRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQ 645
            V+P++++  + R+V+ RV P TA  + F      +         CRGF     +G +  HS F WA KG W+  + ++  + R+   FRIGFEPLFVDYT+ G+ +  + L +   +     L+    VQ  I   L ++  +L+  L PF+N  ++
Sbjct:  730 VYPVLVLWVMVRVVFARVFPPTATGLAFAVTQKDSYYTTNGQRGCRGFFWRVRKGLEEDHSAFAWAKKGAWRTVENEDAKEQRLRNWFRIGFEPLFVDYTKAGSWFALYALMEAAVIACVGVLIDSSQVQLLIFLGLNVVQFVLVAHLTPFANRVVE 886          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK9_ECTSI2.210e-7153.65Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTC8_9PHAE5.360e-6158.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3P1_ECTSI3.820e-4448.41Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5LAH5_9PHAE1.000e-4341.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN93_ECTSI1.360e-2236.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV63_9PHAE6.580e-1833.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWS4_ECTSI3.930e-1733.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLG6_ECTSI1.880e-1631.52Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1L9_ECTSI9.250e-1635.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCW7_9PHAE1.200e-1431.21VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59760contigH-elongata_contig59760:1058..3488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue1.2e-62
Seed eggNOG ortholog2880.D8LIK9
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTRP-like family
Ec32 orthologEc-18_003210.1
Exons4
Model size669
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59760.13492.1prot_H-elongata_contig59760.13492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59760 1058..3488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.1224408-CDS-H-elongata_contig59760:1057..12521622930967.1224408-CDS-H-elongata_contig59760:1057..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 1058..1252 +
1691679643.7754586-CDS-H-elongata_contig59760:1057..12521691679643.7754586-CDS-H-elongata_contig59760:1057..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 1058..1252 +
1622930967.1792636-CDS-H-elongata_contig59760:1758..18951622930967.1792636-CDS-H-elongata_contig59760:1758..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 1759..1895 +
1691679643.78453-CDS-H-elongata_contig59760:1758..18951691679643.78453-CDS-H-elongata_contig59760:1758..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 1759..1895 +
1622930967.2017536-CDS-H-elongata_contig59760:2245..24511622930967.2017536-CDS-H-elongata_contig59760:2245..2451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 2246..2451 +
1691679643.7949948-CDS-H-elongata_contig59760:2245..24511691679643.7949948-CDS-H-elongata_contig59760:2245..2451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 2246..2451 +
1622930967.2181509-CDS-H-elongata_contig59760:3357..34881622930967.2181509-CDS-H-elongata_contig59760:3357..3488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 3358..3488 +
1691679643.8044662-CDS-H-elongata_contig59760:3357..34881691679643.8044662-CDS-H-elongata_contig59760:3357..3488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59760 3358..3488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59760.13492.1

>prot_H-elongata_contig59760.13492.1 ID=prot_H-elongata_contig59760.13492.1|Name=mRNA_H-elongata_contig59760.13492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
LRQTQLCLDVLPPHRARLPAFCVPGSFHRGSAHDLQWLPYACCPRGVRAG
TCCGKYRGVSWAGAGFVFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPA
DRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQEDLDGRMFRIGF
EPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDI
ILLCILRPFSNSFIQWIETVLVS
back to top

mRNA from alignment at H-elongata_contig59760:1058..3488+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59760.13492.1 ID=mRNA_H-elongata_contig59760.13492.1|Name=mRNA_H-elongata_contig59760.13492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig59760:1058..3488+ (Himanthalia elongata Himel1 dioecious)
CTGCGACAGACACAGCTCTGCCTGGATGTACTTCCCCCACATCGAGCTCG TCTACCTGCTTTTTGCGTACCAGGGAGCTTCCATCGCGGAAGCGCGCATG ATTTACAGTGGCTGCCCTACGCTTGTTGCCCTCGGGGTGTTCGCGCTGGT ACGTGTTGCGGGAAATATAGAGGCGTGTCGTGGGCGGGAGCTGGGGTTGG GAGAGGGTGGAGGGGGATTGCGGAGTGATAAACTTATTACATTATTGTTT TTCGGTGCGAGCTGCTTCTGCTGCTGCTGCTGCTCCAGTTGGTCATTATA CATTTATCGTGGAAATGAGTGGATTCGATAGGATTAATTTTTGACATGTT GAGATATGGCTTAGCCTGGTGTTGAGATGCATTGGTCGGTTTTGGAGTCA GGCAAGGAGCTATGGAAGGGTTCATCTTCCGCTTTTGTGAATGTAATAGG AGGTTGGGATGGGATGCTTACGCACACGTACGCGCACACGACCACCTGCT CCAAGCACAAAACACTGGGGTGATTCATGAATCCTGTAGTTCCTTCTTCC CTCCGACCTCGACCCCCCCTCCACCCCCCCCCCGAAATAAAAACAAGTTT CCCTTTTATATTTTTTACTTTAAAAGTTTTTCCCTCACTGTAAACGTCAC CGTCACCCCGCTTTTCTATGTGCCTCTTCCTCGTTGTGAATGCTACCGCA GTTCGTCTTCCCGATCGTGATGGTTCTTTACGTGGGACGCATAGTATGGA AGAGAGTCCAGCCGCAGACGGCACCCATCGTCTTTCACGCGGTTGATTCG CCGGCCGACCGCCGCTGTTGGTGTATTGAGATGTGCAGGTAACAAGAAAA CGAAGGAAGAATTATATGTGAATATATATAGATATATATAGATATATATA TTCCAAAAACAGAGAAACACATCGACAACACACATGCACATCGACAAGAC ACTTGCACATGTATATATTAACATATTCTGCCTCCTCAGGACGCGTGTAA AATATGCTCTCACAGGTAAGGCATGCAAAAGTTGAGTACTGTACCCCCCT CCCCCCCCCATTTTTTTTTTAGGAAGGATAAGTTTCCGTGTAGGCACCAA AACTAATAGTGTAAAACTATATATCTTTCTCGTCCCGAACATCGCCTCGT GCGGTCGGGGGTGGTGGGTGGGGACAACACACGTGCAGGGGATTCGGGCA AGGCTGGAAAAACGGCCATTCTATCTTTACCTGGGCGGACAAGGGCGAGT GGAAGTGCCGAGACGAGCAAGAAGACTTGGATGGCAGAATGTTCCGCATC GGATTCGAGCCCCTGTTCGTCGACTACACGAGGAAGGGCGCAGTGTACAT CACGTTCTTGCTCTGCAAGTGGTTTGCCGTGGGCGTCACGGCAGGTTAGG GTGGTGGCGCGTTTCTTCGGTTTTCGCCTTTAGTGGATGTTGGGGAGGGG GGGAAGGGGACGGGGGGGGGTAGGAAGAGAGAGGGTAAATTTTGTCGTTG TTCCTTTTTTTGTTTTCTATTTTCTCTTTTATGTGTATTTATGTTATTAA AAGTATTTGTAATTTGTGTTTTCCTCTGGTATAATAGTTACTTTTCAATT TTTATTGTTACAATAGCATGATTTTGGCACTCGCACAAAATTAATTTGAT TTCAGTGAAGTCTGAAAACCGCACCCAGCTTTTGTCGGGGCTGGTTTGCC AGTTCTCGCATGGCTATCCCCGCAGACCCTTCGCGGAGCTTTTGGGCGCT TAATTTTGTGTATACATGCTATTCCAGGTGGTACGGGATGAACGTGGAGT GCTTTGTTTGTGTTGAGCGATTATTACCGATTCTTTGCTGTTCCTCCCGA TATTTACATATTCTTATTTATTTTTTAATCGATTCCTAGCGATTTCAAAT GATTCTGAACTCACCGATTCTTGCCGAATTCATCGATTTTAATCGATGTA CAGTACAGAACCTCTACCCATCAACCATTGTATCGGACGGGAGAGATACT GACCAATGACTTCACGCGTTCGAGGTGGTGGGTTTTTTTTGCTGTCATGT GTTTTTTATTTTTTTGTAAAACATTTCATAAAAAAGGGCACACACCCAGA CCGCATAAAATAAACAAAAACAAAACAAAAACAAAAACAAGAAATGATCT CTCTTGTGTCAGCACACAAATACACAAATACACAAACAAAATCGCGACTC TCTCGCCGCTATGAGCAACATGTTTTGTATACTGGTGCTGTAATTTGTAA CACCGTGCGCTTTCCTTCCCCTACCTTTGTCTCTCTCTTTTTGTCTCTAG GTCTCGTGACCAAAGGCACGGTGCAGACGTCAATCCTCTTCATGCTGTAC TTGATAGACATCATCTTGCTGTGTATCCTCCGACCCTTCTCGAATTCCTT CATTCAGTGGATAGAGACCGTCTTGGTAAGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59760:1058..3488+

>mRNA_H-elongata_contig59760.13492.1 ID=mRNA_H-elongata_contig59760.13492.1|Name=mRNA_H-elongata_contig59760.13492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig59760:1058..3488+ (Himanthalia elongata Himel1 dioecious)
CTGCGACAGACACAGCTCTGCCTGGATGTACTTCCCCCACATCGAGCTCG
TCTACCTGCTTTTTGCGTACCAGGGAGCTTCCATCGCGGAAGCGCGCATG
ATTTACAGTGGCTGCCCTACGCTTGTTGCCCTCGGGGTGTTCGCGCTGGT
ACGTGTTGCGGGAAATATAGAGGCGTGTCGTGGGCGGGAGCTGGGCTGCG
ACAGACACAGCTCTGCCTGGATGTACTTCCCCCACATCGAGCTCGTCTAC
CTGCTTTTTGCGTACCAGGGAGCTTCCATCGCGGAAGCGCGCATGATTTA
CAGTGGCTGCCCTACGCTTGTTGCCCTCGGGGTGTTCGCGCTGGTACGTG
TTGCGGGAAATATAGAGGCGTGTCGTGGGCGGGAGCTGGGTTCGTCTTCC
CGATCGTGATGGTTCTTTACGTGGGACGCATAGTATGGAAGAGAGTCCAG
CCGCAGACGGCACCCATCGTCTTTCACGCGGTTGATTCGCCGGCCGACCG
CCGCTGTTGGTGTATTGAGATGTGCAGTTCGTCTTCCCGATCGTGATGGT
TCTTTACGTGGGACGCATAGTATGGAAGAGAGTCCAGCCGCAGACGGCAC
CCATCGTCTTTCACGCGGTTGATTCGCCGGCCGACCGCCGCTGTTGGTGT
ATTGAGATGTGCAGGGGATTCGGGCAAGGCTGGAAAAACGGCCATTCTAT
CTTTACCTGGGCGGACAAGGGCGAGTGGAAGTGCCGAGACGAGCAAGAAG
ACTTGGATGGCAGAATGTTCCGCATCGGATTCGAGCCCCTGTTCGTCGAC
TACACGAGGAAGGGCGCAGTGTACATCACGTTCTTGCTCTGCAAGTGGTT
TGCCGTGGGCGTCACGGCAGGGGATTCGGGCAAGGCTGGAAAAACGGCCA
TTCTATCTTTACCTGGGCGGACAAGGGCGAGTGGAAGTGCCGAGACGAGC
AAGAAGACTTGGATGGCAGAATGTTCCGCATCGGATTCGAGCCCCTGTTC
GTCGACTACACGAGGAAGGGCGCAGTGTACATCACGTTCTTGCTCTGCAA
GTGGTTTGCCGTGGGCGTCACGGCAGGTCTCGTGACCAAAGGCACGGTGC
AGACGTCAATCCTCTTCATGCTGTACTTGATAGACATCATCTTGCTGTGT
ATCCTCCGACCCTTCTCGAATTCCTTCATTCAGTGGATAGAGACCGTCTT
GGTAAGTGTCTCGTGACCAAAGGCACGGTGCAGACGTCAATCCTCTTCAT
GCTGTACTTGATAGACATCATCTTGCTGTGTATCCTCCGACCCTTCTCGA
ATTCCTTCATTCAGTGGATAGAGACCGTCTTGGTAAGT
back to top