mRNA_H-elongata_contig59760.13492.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI) HSP 1 Score: 246 bits (627), Expect = 2.210e-71 Identity = 125/233 (53.65%), Postives = 157/233 (67.38%), Query Frame = 1
Query: 1 LRQTQLCLDVLPPHRARLPAFCVPGSFHRGSAHDLQWLPYACCPRGVRAGTCC-------GKYRGVSWAGAGFVFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPAD--RRCWCIEMCRGFGQGWKNGHSIFTWADKGEW-KCRDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLVS 669
L Q QL +D+LPP A PA +PGS + +HD Q L G G C G R + F+FPI ++ YVGRIVW RV+PQ P+ F +P + +RCWC+ +CRGF GW+NGHSIF WADKG W +DE+ DL+ R FRIGFEPLFVD+T++GAVYI FLL KWFA+G+ AGLVT GTVQT+ L ++YL+DI LLC LRPFSNS +QW+ETVLV+
Sbjct: 1110 LSQAQLGVDILPPRGAGFPALRLPGSVNLRGSHDQQRL----LASGGAGGVCAVLPSVRHGLVRRM--VRRKFIFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEGRKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVT 1336
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE) HSP 1 Score: 208 bits (529), Expect = 5.360e-61 Identity = 95/162 (58.64%), Postives = 122/162 (75.31%), Query Frame = 1
Query: 217 VLYVGRIVWKRVQPQTAPIVFHAVDSPAD----------RRCWCIEMCRGFGQGWKNGHSIFTWADKGEW-KCRDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLVS 669
+ YVGRIVW RV+PQ P+ F +PA +RCWC+ +C+GF GW+NGHS+F WADKG W +DE+ DLD R FRIGFEPLFVD+T++GAVYI FL+ KWFA+ V AGLVT GTVQT+ L ++YL+D+ LLC+LRPFSNS +QW+ET+LV+
Sbjct: 1 MFYVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVT 162
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI) HSP 1 Score: 167 bits (424), Expect = 3.820e-44 Identity = 76/157 (48.41%), Postives = 110/157 (70.06%), Query Frame = 1
Query: 199 VFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQE-DLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLV 666
VFP++M +YV RIVW RV+P +P+ + + A + C+ + C GF + W +G S+F WADKG+W ++ ++ DLD R FRIGFEPLFVDYT+KG +Y+TFLL +W + G+ AG VT GT+QT + +Y++D ++L L+PFSNS IQ T+ V
Sbjct: 723 VFPVLMFIYVSRIVWSRVRPDNSPLRYEP-NPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTV 878
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.000e-43 Identity = 83/198 (41.92%), Postives = 123/198 (62.12%), Query Frame = 1
Query: 76 SFHRGSAHDLQWLPYACCPRGVRAGTCCGKYRGVSWAGAGFVFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQE-DLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLV 666
++ SA + + + C P V G C A VFP++M +YV RIVW RV+P +P+ + + A + C+ + C GF + W +G S+F WA+KG+W ++ ++ DLD R FRIGFEPLFVDYT+KG +Y+TFLL +W + G+ AG VT GT+QT + +Y++D ++L L+PFSNS IQ T+ V
Sbjct: 1017 AYQGASAAEARMIYSGCFPL-VVMGVC-----------ALIVFPVLMFIYVSRIVWSRVRPDNSPLRYEP-NPNAGKGCFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTV 1201
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.360e-22 Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = 1
Query: 184 AGAGFVF-PIVMVLYVGRIVWKRVQPQTAPIVF----------HAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQED---LDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQ 645
AG VF PI+M + V R + RV+P T IVF A D+ +R GW+ HS+F WA+KG W+ + + +G+ FRIGFEPLFVD+T+ GA ++ F L +W A+G L+ + +Q S+ L+ + +LL + RPF+NS I
Sbjct: 1072 AGLALVFYPILMFVAVLRTFFVRVRPNTL-IVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVIN 1238
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5KV63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV63_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.580e-18 Identity = 58/172 (33.72%), Postives = 86/172 (50.00%), Query Frame = 1
Query: 184 AGAGFVF-PIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKCRDEQED---LDGRMFRIGFEPLFVDYTRKGAVYITFLL------------------CKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSN 633
AG VF PI+M + V R + RV+P T PIVF + R GW+ HS+F WA+KG W+ + + +G+ FRIGFEPLFVD+T+ GA ++ F L +W A+G L+ + +Q S+ L+ + +LL + RPF+N
Sbjct: 213 AGLALVFYPILMFVAVLRTFFVRVRPNT-PIVF-------------LSKVRA---GWEEDHSLFAWANKGTWETAETDNEGIRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEGCLGLGHAVSFLLIYFAQWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFAN 367
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 3.930e-17 Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = 1
Query: 199 VFPIVMVLYVGRIVWKRVQPQTAPIVF--HAVDSP-ADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKC---RDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIE 654
++P++M + V R + RV+P ++F +A D D + F W +S+F+WADKG+W+ D Q +G FRIGFEP+FVDYT++G +I L +W A ++ VQ + L+ + +L L+PF+NS I IE
Sbjct: 1437 LYPLLMFVTVFRTLLVRVRPNVL-LIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIE 1593
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.880e-16 Identity = 52/165 (31.52%), Postives = 85/165 (51.52%), Query Frame = 1
Query: 199 VFPIVMVLYVGRIVWKRVQPQTAPIVFHAVDSPADRRCWCIEMCRG-----FGQGWKNGHSIFTWADKGEWKC---RDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQWIETVLVS 669
++P++M V R ++ RV+P ++F D D CRG F W +S+F+WADKG+W+ + +G FRIGFEP+FVDYT++G +I L +W ++ + ++ VQ + L ++L L+PF+NS I I +V+
Sbjct: 1618 LYPLLMFATVVRTLFVRVRPDEL-LIFKTYDE--DGTNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVA 1779
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 9.250e-16 Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 1
Query: 199 VFPIVMVLYVGRIVWKRVQPQTAPIVF--------HAVDSPADRRCWCIEMCRGFGQGWKNGHSIFTWADKGEWKC---RDEQEDLDGRMFRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQ 645
V+P++M++ R RV P T IVF H D R G K HS+F WA+ G W+ DE+ +G FRIGFEPLFVD+T+K + + + L + + TA LV VQ + L+ + +LL I RPF+NS I
Sbjct: 304 VYPVLMIILSYRTHRVRVAPDTL-IVFKPVGEEENHGTDGTVPR-----SFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIIN 457
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.200e-14 Identity = 49/157 (31.21%), Postives = 81/157 (51.59%), Query Frame = 1
Query: 199 VFPIVMVLYVGRIVWKRVQPQTAP-IVFHAVDSPADRRCWCIEMCRGF----GQGWKNGHSIFTWADKGEWKCRDEQEDLDGRM---FRIGFEPLFVDYTRKGAVYITFLLCKWFAVGVTAGLVTKGTVQTSILFMLYLIDIILLCILRPFSNSFIQ 645
V+P++++ + R+V+ RV P TA + F + CRGF +G + HS F WA KG W+ + ++ + R+ FRIGFEPLFVDYT+ G+ + + L + + L+ VQ I L ++ +L+ L PF+N ++
Sbjct: 730 VYPVLVLWVMVRVVFARVFPPTATGLAFAVTQKDSYYTTNGQRGCRGFFWRVRKGLEEDHSAFAWAKKGAWRTVENEDAKEQRLRNWFRIGFEPLFVDYTKAGSWFALYALMEAAVIACVGVLIDSSQVQLLIFLGLNVVQFVLVAHLTPFANRVVE 886 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59760.13492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59760.13492.1 >prot_H-elongata_contig59760.13492.1 ID=prot_H-elongata_contig59760.13492.1|Name=mRNA_H-elongata_contig59760.13492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp LRQTQLCLDVLPPHRARLPAFCVPGSFHRGSAHDLQWLPYACCPRGVRAGback to top mRNA from alignment at H-elongata_contig59760:1058..3488+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59760.13492.1 ID=mRNA_H-elongata_contig59760.13492.1|Name=mRNA_H-elongata_contig59760.13492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig59760:1058..3488+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59760:1058..3488+ >mRNA_H-elongata_contig59760.13492.1 ID=mRNA_H-elongata_contig59760.13492.1|Name=mRNA_H-elongata_contig59760.13492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig59760:1058..3488+ (Himanthalia elongata Himel1 dioecious)back to top |