mRNA_H-elongata_contig59304.13444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59304.13444.1
Unique NamemRNA_H-elongata_contig59304.13444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A6H5KCB3_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCB3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.070e-25
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:   16 RMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            +MS LCFKKCVVKM GESDL+VGEM+CVDRCVSKY+EAQEK+GVILK AEE++AAQQ
Sbjct:   34 KMSGLCFKKCVVKMHGESDLNVGEMSCVDRCVSKYMEAQEKVGVILKRAEESLAAQQ 90
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A7S2HYG5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYG5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.960e-16
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            T L  +M++ CF+KC  K   +SDL++GEM+C DRCV+KY+EAQEKIGVI+++A E  AAQQ
Sbjct:   74 TDLFNKMASSCFQKCASKKHKDSDLALGEMSCTDRCVAKYLEAQEKIGVIIQKANEAQAAQQ 135
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BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A6U1NEZ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NEZ7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.900e-15
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            T L   M+ +CFKKC      E++L+VGEM+CVDRC  KYIEA +K+G +LK  EE M AQQ
Sbjct:   28 TDLFNNMATICFKKCAASKIKEAELNVGEMSCVDRCTGKYIEAHQKVGEVLKRVEEQMKAQQ 89
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: K0R6N2_THAOC (zf-Tim10_DDP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6N2_THAOC)

HSP 1 Score: 72.0 bits (175), Expect = 3.580e-15
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            T L  +M+  CF KC  +   E+DL++GEM+C DRCV+KYIEAQEK+GVIL++A E    QQ
Sbjct:    5 TNLFNKMAASCFNKCASRKHKENDLALGEMSCADRCVAKYIEAQEKVGVILQKANEAQMKQQ 66
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A448YV82_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV82_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-14
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQ 183
            T L  ++++ CF KC  +   E DLS+GEMTC DRCVSKY+E QE+IGV+L++A E  A Q
Sbjct:   29 TDLFNKIASTCFSKCASRKHKEPDLSLGEMTCADRCVSKYLEGQERIGVVLQKANEEQAQQ 89
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A7S0GCN6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCN6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.440e-14
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            T L  +MS  CF+KC      + +L++GEM CVDRCV+KY+E QEK+G++L++A E  AAQQ
Sbjct:   27 TDLFNKMSASCFEKCASTRHKDDELALGEMGCVDRCVAKYLETQEKVGIVLQKANEAQAAQQ 88
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A1E7FWV3_9STRA (Mitochondrial import inner membrane translocase subunit tim10 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWV3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.760e-14
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            T L  ++++ CF+KC  +   E DLS+GEMTC DRCVSKY+E Q+ IGV+L++A E  A QQ
Sbjct:   30 TDLFNKIASECFQKCASRKHKEPDLSLGEMTCTDRCVSKYLEGQQLIGVVLQKANEQQAQQQ 91
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A6U0JD31_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JD31_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.920e-14
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   16 RMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            ++S  CF+KC  +   + DL++GEM C DRCVSKY+EA EK+GV+L++A E  A QQ
Sbjct:   33 KISGTCFEKCASRRHRDGDLALGEMACTDRCVSKYMEAMEKVGVVLQKANEQQAQQQ 89
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A6T5YYM4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5YYM4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.360e-13
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 TLLRGRMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQQ 186
            T L  +++  CF+KC      E D+S+GEM+C DRCV+KY+E+QE++G IL++A E+ AAQQ
Sbjct:   28 TDLFNKIARSCFQKCASTRHREPDISLGEMSCTDRCVAKYLESQERVGKILQKANESQAAQQ 89
[Close]
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Match: A0A7R9W455_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W455_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.430e-13
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   16 RMSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEETMAAQ 183
            R+S+ CF KC  +   + DL++GEM+C DRCV KY+E+ EK+GVIL++A E  AAQ
Sbjct:   59 RISSTCFSKCASRRHRDGDLALGEMSCTDRCVGKYMESMEKVGVILQKANEAQAAQ 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59304.13444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCB3_9PHAE1.070e-2582.46zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A7S2HYG5_9STRA1.960e-1658.06Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U1NEZ7_9STRA1.900e-1554.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0R6N2_THAOC3.580e-1554.84zf-Tim10_DDP domain-containing protein n=1 Tax=Tha... [more]
A0A448YV82_9STRA1.210e-1454.10zf-Tim10_DDP domain-containing protein n=1 Tax=Pse... [more]
A0A7S0GCN6_9STRA3.440e-1451.61Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FWV3_9STRA4.760e-1453.23Mitochondrial import inner membrane translocase su... [more]
A0A6U0JD31_9STRA6.920e-1452.63Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6T5YYM4_9STRA1.360e-1350.00Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7R9W455_9STRA1.430e-1353.57Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59304contigH-elongata_contig59304:1941..2617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue9.8e-19
Seed eggNOG ortholog2880.D8LMX7
Preferred nameTIMM10
KEGG koko:K17778,ko:K17781,ko:K17793
KEGG TC3.A.8.1
GOsGO:0000003,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008289,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0040008,GO:0040014,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1990351,GO:1990542
EggNOG free text desc.protein import into mitochondrial inner membrane
EggNOG OGsKOG3480@1,KOG3480@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionMitochondrial protein import TIM9.10 complex subunit, Tim10 homolog
Ec32 orthologEc-02_004050.1
Exons2
Model size186
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59304.13444.1prot_H-elongata_contig59304.13444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59304 1941..2599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.9928963-CDS-H-elongata_contig59304:1940..19881622930961.9928963-CDS-H-elongata_contig59304:1940..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59304 1941..1988 -
1691679641.8272364-CDS-H-elongata_contig59304:1940..19881691679641.8272364-CDS-H-elongata_contig59304:1940..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59304 1941..1988 -
1622930962.0075035-CDS-H-elongata_contig59304:2479..25991622930962.0075035-CDS-H-elongata_contig59304:2479..2599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59304 2480..2599 -
1691679641.8424592-CDS-H-elongata_contig59304:2479..25991691679641.8424592-CDS-H-elongata_contig59304:2479..2599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59304 2480..2599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.0184467-UTR-H-elongata_contig59304:2599..26171622930962.0184467-UTR-H-elongata_contig59304:2599..2617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59304 2600..2617 -
1691679641.8550787-UTR-H-elongata_contig59304:2599..26171691679641.8550787-UTR-H-elongata_contig59304:2599..2617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59304 2600..2617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59304.13444.1

>prot_H-elongata_contig59304.13444.1 ID=prot_H-elongata_contig59304.13444.1|Name=mRNA_H-elongata_contig59304.13444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MSNLCFKKCVVKMSGESDLSVGEMTCVDRCVSKYIEAQEKIGVILKEAEE
TMAAQQ
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mRNA from alignment at H-elongata_contig59304:1941..2617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59304.13444.1 ID=mRNA_H-elongata_contig59304.13444.1|Name=mRNA_H-elongata_contig59304.13444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig59304:1941..2617- (Himanthalia elongata Himel1 dioecious)
ACTCTGCTCCGAGGCAGGATGAGTAATCTTTGCTTCAAGAAGTGCGTGGT
GAAGATGTCGGGCGAGTCCGATCTCAGCGTGGGGGAGATGACCTGCGTTG
ATCGATGCGTCAGCAAGTACATCGAGGCGCAAGAAAAGGTGAAGTTGCGG
CGCCTCCGAACCCGCTTTTTCATCACTTGGAACATACTCGTTTTCATTTA
GTCATGATGGCACTACTTTGCGTCGACTATAATGTGTTGGATACAAAATG
CTGGATACATTGCAGTCCGTCCTTCCTTAGGGTCACATCGACTGCTCGCC
CGTCTCGCGGACTCAACAGTCCAAAGCTTCGCGGCAAAAACGCATGAACC
GTCAACGTTGGCACTCGGACGCGGAAATCAACACAGTATATGCTGTATAT
GGAAATCCATCCGGAATGCATAGCTGGAGGACCGGAAACCTAGCTGCGTG
TGTGTGACATGGGAAGGAAGCTTTCGCTGTACTTGAACTGCCTCGCGGAA
TAGAAAAAAAATAGAGTGTATTCCCCATGCGGAGTGTATCCCCCATGCGC
TTTGAACGTGTTATACCCTGTCACGGTAGTAGCGTTCGGACACCTCACAT
CACTCCTTTTCACGTCCGTTACCTTGCAGATTGGGGTGATTCTCAAGGAG
GCAGAGGAGACCATGGCGGCACAGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig59304:1941..2617-

>mRNA_H-elongata_contig59304.13444.1 ID=mRNA_H-elongata_contig59304.13444.1|Name=mRNA_H-elongata_contig59304.13444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig59304:1941..2617- (Himanthalia elongata Himel1 dioecious)
ATGAGTAATCTTTGCTTCAAGAAGTGCGTGGTGAAGATGTCGGGCGAGTC
CGATCTCAGCGTGGGGGAGATGACCTGCGTTGATCGATGCGTCAGCAAGT
ACATCGAGGCGCAAGAAAAGATGAGTAATCTTTGCTTCAAGAAGTGCGTG
GTGAAGATGTCGGGCGAGTCCGATCTCAGCGTGGGGGAGATGACCTGCGT
TGATCGATGCGTCAGCAAGTACATCGAGGCGCAAGAAAAGATTGGGGTGA
TTCTCAAGGAGGCAGAGGAGACCATGGCGGCACAGCAAATTGGGGTGATT
CTCAAGGAGGCAGAGGAGACCATGGCGGCACAGCAA
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