mRNA_H-elongata_contig5919.13432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5919.13432.1
Unique NamemRNA_H-elongata_contig5919.13432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: D7FR99_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR99_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.780e-54
Identity = 107/130 (82.31%), Postives = 119/130 (91.54%), Query Frame = 1
Query:   25 QLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKT-NRQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KV 411
            QL+D+QRELEDLRLENR F++YYERHAS+ A E D+EKRKT NRQRRRQLPTVLTIEQKVEIG+ E  VA+KDLEDTKRNS KLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAE++ TG+T+A KV
Sbjct:   10 QLDDVQRELEDLRLENRIFKSYYERHASEVA-EVDEEKRKTTNRQRRRQLPTVLTIEQKVEIGVHEQEVAHKDLEDTKRNSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGNTMAEKV 138          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A836CMH5_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.690e-34
Identity = 82/139 (58.99%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   13 SSASQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKTNRQRRRQL-PTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KVQ*QLE 426
            S  ++LE L  E E+L LEN   + YYER+A+D   + +D KR  NRQRRRQ  PT LT+EQK E+   E AVA + LE+ KR S +LIDTL AVLEETDIRIA+LKK+AYEFKRD+VVGAE++ TG TVA KV   +E
Sbjct:   24 SETNRLEQLHDESEELTLENSILKDYYERNAADGVGDEED-KRLRNRQRRRQAAPTTLTLEQKAEVAEAEHAVAVQTLEEAKRGSERLIDTLHAVLEETDIRIAELKKDAYEFKRDVVVGAENMRTGKTVAEKVVRYME 161          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: K3WVN1_GLOUD (DUF4201 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVN1_GLOUD)

HSP 1 Score: 119 bits (298), Expect = 6.490e-29
Identity = 71/134 (52.99%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   22 SQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKR----KTNRQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KV 411
            ++LEDL R+ E ++ EN   E+Y  R+A       DDEKR    K +RQRR +   +LT++QK ++   EL  A K+LE+T+R S +L+DTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAE+  TG T+A K+
Sbjct:   12 TKLEDLTRQNEIIKQENELLESYLHRNAQTLPGSDDDEKRDEKDKKSRQRRARAKMLLTMDQKNDLCSTELEAAQKELEETRRTSERLVDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEKM 145          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A7S3XQG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQG1_HETAK)

HSP 1 Score: 119 bits (299), Expect = 6.560e-29
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   28 LEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKTNRQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KVQ*QLE 426
            LE ++RE++ L +E    E+YY RH+ +   E +  KR+      ++ P  LTIEQK EI   EL  + +++E+TKRNS KLIDTL+AVLEET IRI++LK++AYEFKRDIVVGAE++ TG TVA KV   +E
Sbjct:   31 LERVEREMDSLNIEVGVLESYYNRHSQEMGGEDEANKRRWRVAAGKKAPLTLTIEQKCEIANAELDESQREIEETKRNSEKLIDTLRAVLEETSIRISELKRDAYEFKRDIVVGAENMRTGRTVAEKVVRYME 163          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A1V9YA48_9STRA (DUF4201 domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YA48_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.160e-27
Identity = 71/142 (50.00%), Postives = 100/142 (70.42%), Query Frame = 1
Query:   22 SQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKT-------NRQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KVQ*QLE 426
            ++LE+  R+ E +  EN  F+++ +R+A  + A  DDEK++        NRQRR++    +TIEQK +I   EL  A K++E+TKR+S +LIDTL+AVLEETDIRIA+LK +AYEFKRDIVVGAE+  TG T+A K+   +E
Sbjct:   15 AKLEEALRQNELISHENELFDSFLKRNAQPSNASEDDEKKEKPDKQAAKNRQRRQRPQATITIEQKNDICSAELEEAQKEIEETKRSSERLIDTLRAVLEETDIRIAELKMDAYEFKRDIVVGAENFRTGKTIAEKMVRYME 156          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A5D6Y8W9_9STRA (DUF4201 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8W9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.900e-27
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   19 ASQLEDLQRELEDLRLENRTFETYYERHA-----SDAAAEADDEKRKTNRQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KV 411
            A  LEDL R  + L+ EN   ++Y +R+A     SD     D++ RK  RQRR +   +LT++QK ++   EL  A K+LE+T+R S +LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAE+  TG T+A K+
Sbjct:   19 AIDLEDLGRHNDVLKQENLLLDSYLQRNAQGLAGSDDENRRDEKDRKGQRQRRARAQALLTMDQKNDLCSTELEAAQKELEETRRTSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEKM 154          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: H3GA29_PHYRM (DUF4201 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3GA29_PHYRM)

HSP 1 Score: 113 bits (283), Expect = 9.600e-27
Identity = 70/136 (51.47%), Postives = 98/136 (72.06%), Query Frame = 1
Query:   22 SQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKTN------RQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KV 411
            ++L+D+  + + L+ EN   E+Y +R+       +DDE+++T+      RQRR +   +LTIEQK +I   EL  A K+LE+TKR+S +LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAE+  TG T+A K+
Sbjct:   11 AKLDDVAHQNDVLKQENELLESYLQRNGQPTTG-SDDEEKQTDKKAGGSRQRRVRAQVMLTIEQKNDICSTELEAAQKELEETKRSSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEKM 145          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A3F2RQ37_9STRA (DUF4201 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQ37_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.230e-26
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   22 SQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKTN-------RQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KV 411
            ++L+DL  + +  + EN   E+Y +R+        D+EKR          RQRR +   +LTIEQK +I   EL  A K+LE+TKR+S +LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAE+  TG T+A K+
Sbjct:   11 AKLDDLAHQNDVFKQENELLESYLQRNGQPTTGSDDEEKRDDRDKKLAGVRQRRVRTQIMLTIEQKNDICSTELEAAQKELEETKRSSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEKM 147          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A8K1CQ56_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ56_PYTOL)

HSP 1 Score: 112 bits (279), Expect = 3.840e-26
Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = 1
Query:   22 SQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKTNRQRRR----QLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KV 411
            ++LEDL R+ + L+ EN  F++Y  R A   A   DDEK+            +   +LT+EQK +I   EL  A+K+LE+TKR S +LIDTL+AV+EETDIRIA+LKK+AYEFKRDIVVGAE+  TG T+A K+
Sbjct:   11 TKLEDLTRQNDVLKQENELFDSYLGRQAEGLAGSDDDEKKDXXXXXXXXXXARAQVMLTMEQKNDISSTELEAAHKELEETKRTSERLIDTLRAVIEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEKM 144          
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Match: A0A485KME4_9STRA (Aste57867_9115 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KME4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.810e-25
Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 1
Query:   22 SQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKR-----KTNR----QRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*KVQ*QLE 426
            ++LE+  R+ E L  EN  FE+Y +R+A    A  ++EK+     KTN+    QRR +    +TIEQK +I   EL  A K++E+TKR S +LIDTL+AVLEETDIRI++LK +AYEFKRDIVVGAE+  TG T+A K+   +E
Sbjct:   12 TKLEEALRQNEQLAHENELFESYLKRNAQPNMAADEEEKKEKALDKTNQKKQGQRRPRPQATITIEQKNDISSAELEEAQKEVEETKRTSERLIDTLRAVLEETDIRISELKMDAYEFKRDIVVGAENFRTGKTIAEKMVRYME 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5919.13432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR99_ECTSI1.780e-5482.31Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A836CMH5_9STRA4.690e-3458.99Flagellar associated protein n=1 Tax=Tribonema min... [more]
K3WVN1_GLOUD6.490e-2952.99DUF4201 domain-containing protein n=1 Tax=Globispo... [more]
A0A7S3XQG1_HETAK6.560e-2951.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9YA48_9STRA4.160e-2750.00DUF4201 domain-containing protein n=2 Tax=Saproleg... [more]
A0A5D6Y8W9_9STRA5.900e-2752.21DUF4201 domain-containing protein n=1 Tax=Pythium ... [more]
H3GA29_PHYRM9.600e-2751.47DUF4201 domain-containing protein n=19 Tax=Phytoph... [more]
A0A3F2RQ37_9STRA1.230e-2651.09DUF4201 domain-containing protein n=1 Tax=Phytopht... [more]
A0A8K1CQ56_PYTOL3.840e-2651.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KME4_9STRA1.810e-2550.00Aste57867_9115 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5919contigH-elongata_contig5919:54..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue6.6e-45
Seed eggNOG ortholog2880.D7FR99
Preferred nameCCDC113
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0034451,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044782,GO:0060271,GO:0070013,GO:0070925,GO:0071840,GO:0120031,GO:0120036
EggNOG free text desc.cilium assembly
EggNOG OGs28MPJ@1,2QU7J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size597
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5919.13432.1prot_H-elongata_contig5919.13432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5919 246..938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.7130408-UTR-H-elongata_contig5919:53..2451622930960.7130408-UTR-H-elongata_contig5919:53..245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5919 54..245 -
1691679641.312074-UTR-H-elongata_contig5919:53..2451691679641.312074-UTR-H-elongata_contig5919:53..245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5919 54..245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.7350357-CDS-H-elongata_contig5919:245..4101622930960.7350357-CDS-H-elongata_contig5919:245..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5919 246..410 -
1691679641.3237991-CDS-H-elongata_contig5919:245..4101691679641.3237991-CDS-H-elongata_contig5919:245..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5919 246..410 -
1622930960.7533233-CDS-H-elongata_contig5919:698..9381622930960.7533233-CDS-H-elongata_contig5919:698..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5919 699..938 -
1691679641.3363407-CDS-H-elongata_contig5919:698..9381691679641.3363407-CDS-H-elongata_contig5919:698..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5919 699..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5919.13432.1

>prot_H-elongata_contig5919.13432.1 ID=prot_H-elongata_contig5919.13432.1|Name=mRNA_H-elongata_contig5919.13432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MFQLSSASQLEDLQRELEDLRLENRTFETYYERHASDAAAEADDEKRKTN
RQRRRQLPTVLTIEQKVEIGLKELAVANKDLEDTKRNSGKLIDTLKAVLE
ETDIRIADLKKEAYEFKRDIVVGAEHVMTGSTVA*
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mRNA from alignment at H-elongata_contig5919:54..938-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5919.13432.1 ID=mRNA_H-elongata_contig5919.13432.1|Name=mRNA_H-elongata_contig5919.13432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig5919:54..938- (Himanthalia elongata Himel1 dioecious)
ATGTTTCAACTGTCGTCCGCGTCGCAGCTTGAGGATCTACAGCGCGAATT GGAAGATCTCCGGCTGGAAAATCGTACATTCGAAACTTATTACGAGAGGC ACGCGTCGGACGCCGCAGCTGAAGCGGATGATGAGAAACGGAAGACAAAC CGGCAACGCCGGCGTCAGCTTCCTACGGTCTTAACAATCGAACAGAAAGT GGAAATCGGACTGAAAGAATTGGCCGTTGCCAACAAGGATGTGAGCTGTT TCAAGAAACGTAAGACAAGAGCTGTTGACAACTAAGGACGAGGTTTGGGT ACGAGGGAGCTTGTGTTTTCTTGTGCTGCTTTAGCTTCGTATCACGCAAG ACAGCTTTTCCTTAGGTAGAGCATTTGTCGCTTCGGGTGCTGCTTGGTAT GTCGTTTGGGTCGCCTAACGGGACTGCCCGGTAACCTTTATCAACCGGGG TAGAATCAAAGAAATTATTATGCTCTCAAAAGAGTTGTGCCTGCTTGGTG AATATTTCCCCATCTTGTCTACCACAAGCTTGAGGATACGAAGAGGAACT CGGGAAAGCTTATTGACACCCTGAAAGCTGTATTGGAGGAGACAGATATT CGCATCGCGGACCTGAAGAAGGAGGCTTACGAGTTCAAGAGGGACATCGT TGTAGGAGCGGAGCACGTGATGACGGGAAGCACGGTGGCATAAAAGGTGC AGTAACAGTTGGAAGCTTGAATTAAGTTTGACCGAGCTTCGTAGTCTCCA ACATGTCGTCCGCAAGGAGTCTGATTTCGCTCTATACCGCTCTCGCTCTC GAATGAAGCAACTACAGTACATAGTGGGTGTGGTAAAATAGAGGCATACA GTAGTTGGACCATGGGGTTGAATAGGCTTCACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig5919:54..938-

>mRNA_H-elongata_contig5919.13432.1 ID=mRNA_H-elongata_contig5919.13432.1|Name=mRNA_H-elongata_contig5919.13432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig5919:54..938- (Himanthalia elongata Himel1 dioecious)
ATGTTTCAACTGTCGTCCGCGTCGCAGCTTGAGGATCTACAGCGCGAATT
GGAAGATCTCCGGCTGGAAAATCGTACATTCGAAACTTATTACGAGAGGC
ACGCGTCGGACGCCGCAGCTGAAGCGGATGATGAGAAACGGAAGACAAAC
CGGCAACGCCGGCGTCAGCTTCCTACGGTCTTAACAATCGAACAGAAAGT
GGAAATCGGACTGAAAGAATTGGCCGTTGCCAACAAGGATATGTTTCAAC
TGTCGTCCGCGTCGCAGCTTGAGGATCTACAGCGCGAATTGGAAGATCTC
CGGCTGGAAAATCGTACATTCGAAACTTATTACGAGAGGCACGCGTCGGA
CGCCGCAGCTGAAGCGGATGATGAGAAACGGAAGACAAACCGGCAACGCC
GGCGTCAGCTTCCTACGGTCTTAACAATCGAACAGAAAGTGGAAATCGGA
CTGAAAGAATTGGCCGTTGCCAACAAGGATCTTGAGGATACGAAGAGGAA
CTCGGGAAAGCTTATTGACACCCTGAAAGCTGTATTGGAGGAGACAGATA
TTCGCATCGCGGACCTGAAGAAGGAGGCTTACGAGTTCAAGAGGGACATC
GTTGTAGGAGCGGAGCACGTGATGACGGGAAGCACGGTGGCATAACTTGA
GGATACGAAGAGGAACTCGGGAAAGCTTATTGACACCCTGAAAGCTGTAT
TGGAGGAGACAGATATTCGCATCGCGGACCTGAAGAAGGAGGCTTACGAG
TTCAAGAGGGACATCGTTGTAGGAGCGGAGCACGTGATGACGGGAAGCAC
GGTGGCATAA
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