mRNA_H-elongata_contig117146.1342.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.830e-32 Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLA 267
QSML LFM GSLLFEV+P KYFK GYAPM EG+ RHAYS S +MG S+PS ETCM+ Y+CRWYAR S+VELDE SLERLV LA
Sbjct: 321 QSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGLDVRHAYSMSRALRPMMGHSYPSTETCMKWYLCRWYARSSDVELDEESLERLVDLA 409
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI) HSP 1 Score: 115 bits (288), Expect = 2.120e-28 Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLAL 270
QSML+LFM GSLLFEVYPHKY+K GYAPM + MG R+AYS+SPP L +SWPS+E CM+ Y+CR Y R S+V + E S+E L+ L L
Sbjct: 366 QSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPPLLPFAFWSWPSVEQCMKWYVCRRYMRSSDVVITEDSIEVLISLML 455
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A6H5JCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF3_9PHAE) HSP 1 Score: 112 bits (281), Expect = 4.600e-27 Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLAL 270
QSML+LFM GSLLFEVYPHKY+K GYAPM + MG R+AYS+SPP L +SWPS+E CM+ Y+CR Y R S+V + S+E L+ L L
Sbjct: 527 QSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPPLLPFAFWSWPSVEQCMKWYLCRRYMRSSDVVITADSIEVLISLML 616
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A7S3XXH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXH4_HETAK) HSP 1 Score: 72.4 bits (176), Expect = 7.840e-13 Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPP----HLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLV 258
Q++ LFMP G L++EV+P+KY+K GYAP+V +G H ++ SPP H L+ L C Y CR +AR ++V + EA+L R+V
Sbjct: 362 QTIAVLFMPPGGLVYEVFPYKYWKVGYAPLVREVGLTHHWAMSPPAGPVHRALLAAV--PLSVCSLSYRCRLFARDADVVVGEAALRRVV 449
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A7S0T3C4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T3C4_9CHLO) HSP 1 Score: 62.0 bits (149), Expect = 5.310e-10 Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPP-----HLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLALA 273
QSML L +P G+LL+EV+PH+Y+K GY G H + S P L+ GF+ CM + CR+ AR +V L+ + + R A A
Sbjct: 10 QSMLYLMLPPGALLYEVFPHRYYKHGYKRAALEWGLSHGMTMSAPSGHVARLISHGFTTAQ---CMSMFYCRYLARKGDVALEARDIVAIARAAAA 102
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: C1N2E6_MICPC (Uncharacterized protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N2E6_MICPC) HSP 1 Score: 63.2 bits (152), Expect = 1.410e-9 Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNVELDEASLERLVRLALA 273
QSML LF+P +LL+EV+PH+Y+K GY G + ++ SPP + T CM+ Y CR+ AR NV + + + R A
Sbjct: 436 QSMLYLFLPPRALLYEVFPHRYYKHGYKRAALEWGLSYGFTMSPPSSTTARVIGRTFTTNACMQMYYCRYNARKGNVSVSDEDASAIARAVAA 528
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: C1DZC0_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZC0_MICCC) HSP 1 Score: 62.8 bits (151), Expect = 1.910e-9 Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNVELDEASLERLVRLALA 273
QSML + + G++++EV+PH+Y+K GY G H S SPP L + T CM Y CR++AR +V L+ +E + R A
Sbjct: 402 QSMLYILLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGMSLSPPRGALPTLISRAFTTGGCMSMYYCRYFARKGDVALEARDVEAIARAVRA 494
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A7S0KFF8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KFF8_MICPS) HSP 1 Score: 60.1 bits (144), Expect = 5.110e-9 Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNVELDEASLERLVRLALA 273
QSML + + G++++EV+PH+Y+K GY G H S SPP L + T CM Y CR+ AR +V L+ +E + R A
Sbjct: 76 QSMLYVLLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGASLSPPRGALPTLISRAFTTRGCMSMYYCRYLARKGDVVLEARDVEAIARAVRA 168
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A482RTA3_9ARCH (DUF563 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTA3_9ARCH) HSP 1 Score: 57.8 bits (138), Expect = 2.180e-8 Identity = 33/77 (42.86%), Postives = 41/77 (53.25%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNV 225
QSML L MP SLLFEV+P +Y+K Y+P MG H SPP L G + T C + +CR AR +V
Sbjct: 77 QSMLLLLMPPSSLLFEVFPFRYYKPAYSPFGAEMGVHHGGVMSPPTYWLYGLLMQYVTTPWCTQTKMCRVNARDQDV 153
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: D8LD62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD62_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 3.660e-7 Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGM 102
QSML LFM GSLLFEV+P KYFK GYAPM EG+
Sbjct: 338 QSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGL 371 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117146.1342.1 >prot_H-elongata_contig117146.1342.1 ID=prot_H-elongata_contig117146.1342.1|Name=mRNA_H-elongata_contig117146.1342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp MLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFback to top mRNA from alignment at H-elongata_contig117146:122..400+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117146.1342.1 ID=mRNA_H-elongata_contig117146.1342.1|Name=mRNA_H-elongata_contig117146.1342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig117146:122..400+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117146:122..400+ >mRNA_H-elongata_contig117146.1342.1 ID=mRNA_H-elongata_contig117146.1342.1|Name=mRNA_H-elongata_contig117146.1342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig117146:122..400+ (Himanthalia elongata Himel1 dioecious)back to top |