mRNA_H-elongata_contig117146.1342.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117146.1342.1
Unique NamemRNA_H-elongata_contig117146.1342.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.830e-32
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLA 267
            QSML LFM  GSLLFEV+P KYFK GYAPM EG+  RHAYS S     +MG S+PS ETCM+ Y+CRWYAR S+VELDE SLERLV LA
Sbjct:  321 QSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGLDVRHAYSMSRALRPMMGHSYPSTETCMKWYLCRWYARSSDVELDEESLERLVDLA 409          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.120e-28
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLAL 270
            QSML+LFM  GSLLFEVYPHKY+K GYAPM + MG R+AYS+SPP L    +SWPS+E CM+ Y+CR Y R S+V + E S+E L+ L L
Sbjct:  366 QSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPPLLPFAFWSWPSVEQCMKWYVCRRYMRSSDVVITEDSIEVLISLML 455          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A6H5JCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.600e-27
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLAL 270
            QSML+LFM  GSLLFEVYPHKY+K GYAPM + MG R+AYS+SPP L    +SWPS+E CM+ Y+CR Y R S+V +   S+E L+ L L
Sbjct:  527 QSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPPLLPFAFWSWPSVEQCMKWYLCRRYMRSSDVVITADSIEVLISLML 616          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A7S3XXH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXH4_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 7.840e-13
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPP----HLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLV 258
            Q++  LFMP G L++EV+P+KY+K GYAP+V  +G  H ++ SPP    H  L+      L  C   Y CR +AR ++V + EA+L R+V
Sbjct:  362 QTIAVLFMPPGGLVYEVFPYKYWKVGYAPLVREVGLTHHWAMSPPAGPVHRALLAAV--PLSVCSLSYRCRLFARDADVVVGEAALRRVV 449          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A7S0T3C4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T3C4_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 5.310e-10
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPP-----HLLLMGFSWPSLETCMEHYICRWYARLSNVELDEASLERLVRLALA 273
            QSML L +P G+LL+EV+PH+Y+K GY       G  H  + S P      L+  GF+      CM  + CR+ AR  +V L+   +  + R A A
Sbjct:   10 QSMLYLMLPPGALLYEVFPHRYYKHGYKRAALEWGLSHGMTMSAPSGHVARLISHGFTTAQ---CMSMFYCRYLARKGDVALEARDIVAIARAAAA 102          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: C1N2E6_MICPC (Uncharacterized protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N2E6_MICPC)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-9
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNVELDEASLERLVRLALA 273
            QSML LF+P  +LL+EV+PH+Y+K GY       G  + ++ SPP          +  T  CM+ Y CR+ AR  NV + +     + R   A
Sbjct:  436 QSMLYLFLPPRALLYEVFPHRYYKHGYKRAALEWGLSYGFTMSPPSSTTARVIGRTFTTNACMQMYYCRYNARKGNVSVSDEDASAIARAVAA 528          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: C1DZC0_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZC0_MICCC)

HSP 1 Score: 62.8 bits (151), Expect = 1.910e-9
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNVELDEASLERLVRLALA 273
            QSML + +  G++++EV+PH+Y+K GY       G  H  S SPP   L      +  T  CM  Y CR++AR  +V L+   +E + R   A
Sbjct:  402 QSMLYILLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGMSLSPPRGALPTLISRAFTTGGCMSMYYCRYFARKGDVALEARDVEAIARAVRA 494          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A7S0KFF8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KFF8_MICPS)

HSP 1 Score: 60.1 bits (144), Expect = 5.110e-9
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNVELDEASLERLVRLALA 273
            QSML + +  G++++EV+PH+Y+K GY       G  H  S SPP   L      +  T  CM  Y CR+ AR  +V L+   +E + R   A
Sbjct:   76 QSMLYVLLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGASLSPPRGALPTLISRAFTTRGCMSMYYCRYLARKGDVVLEARDVEAIARAVRA 168          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: A0A482RTA3_9ARCH (DUF563 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTA3_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 2.180e-8
Identity = 33/77 (42.86%), Postives = 41/77 (53.25%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGFSWPSLET--CMEHYICRWYARLSNV 225
            QSML L MP  SLLFEV+P +Y+K  Y+P    MG  H    SPP   L G     + T  C +  +CR  AR  +V
Sbjct:   77 QSMLLLLMPPSSLLFEVFPFRYYKPAYSPFGAEMGVHHGGVMSPPTYWLYGLLMQYVTTPWCTQTKMCRVNARDQDV 153          
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Match: D8LD62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD62_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.660e-7
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    1 QSMLALFMPSGSLLFEVYPHKYFKTGYAPMVEGM 102
            QSML LFM  GSLLFEV+P KYFK GYAPM EG+
Sbjct:  338 QSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGL 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117146.1342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K1S1_9PHAE1.830e-3269.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGW3_ECTSI2.120e-2861.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF3_9PHAE4.600e-2760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XXH4_HETAK7.840e-1342.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0T3C4_9CHLO5.310e-1036.46Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C1N2E6_MICPC1.410e-935.48Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
C1DZC0_MICCC1.910e-935.48Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0KFF8_MICPS5.110e-935.48Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A482RTA3_9ARCH2.180e-842.86DUF563 domain-containing protein (Fragment) n=1 Ta... [more]
D8LD62_ECTSI3.660e-776.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117146contigH-elongata_contig117146:122..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.8e-22
Seed eggNOG ortholog2880.D7FGW3
EggNOG OGs2C9EE@1,2SQH4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size273
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.855897-UTR-H-elongata_contig117146:121..1271622929681.855897-UTR-H-elongata_contig117146:121..127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117146 122..127 +
1691679117.7180295-UTR-H-elongata_contig117146:121..1271691679117.7180295-UTR-H-elongata_contig117146:121..127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117146 122..127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.884195-CDS-H-elongata_contig117146:127..4001622929681.884195-CDS-H-elongata_contig117146:127..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117146 128..400 +
1691679117.7322757-CDS-H-elongata_contig117146:127..4001691679117.7322757-CDS-H-elongata_contig117146:127..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117146 128..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117146.1342.1prot_H-elongata_contig117146.1342.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117146 128..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117146.1342.1

>prot_H-elongata_contig117146.1342.1 ID=prot_H-elongata_contig117146.1342.1|Name=mRNA_H-elongata_contig117146.1342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MLALFMPSGSLLFEVYPHKYFKTGYAPMVEGMGARHAYSQSPPHLLLMGF
SWPSLETCMEHYICRWYARLSNVELDEASLERLVRLALAV*
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mRNA from alignment at H-elongata_contig117146:122..400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117146.1342.1 ID=mRNA_H-elongata_contig117146.1342.1|Name=mRNA_H-elongata_contig117146.1342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig117146:122..400+ (Himanthalia elongata Himel1 dioecious)
CAGTCGATGCTGGCCCTCTTTATGCCGTCGGGCTCACTACTCTTCGAGGT TTATCCCCACAAGTACTTCAAGACCGGGTACGCGCCAATGGTGGAGGGGA TGGGCGCGAGACACGCCTACTCCCAGAGCCCACCGCACTTGCTGCTTATG GGGTTTTCTTGGCCCAGCCTGGAGACGTGCATGGAACATTACATATGTCG CTGGTACGCTCGTCTGTCAAACGTGGAGCTTGACGAGGCAAGCCTGGAGC GTCTCGTCCGCCTCGCGCTTGCAGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig117146:122..400+

>mRNA_H-elongata_contig117146.1342.1 ID=mRNA_H-elongata_contig117146.1342.1|Name=mRNA_H-elongata_contig117146.1342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig117146:122..400+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCCTCTTTATGCCGTCGGGCTCACTACTCTTCGAGGTTTATCC
CCACAAGTACTTCAAGACCGGGTACGCGCCAATGGTGGAGGGGATGGGCG
CGAGACACGCCTACTCCCAGAGCCCACCGCACTTGCTGCTTATGGGGTTT
TCTTGGCCCAGCCTGGAGACGTGCATGGAACATTACATATGTCGCTGGTA
CGCTCGTCTGTCAAACGTGGAGCTTGACGAGGCAAGCCTGGAGCGTCTCG
TCCGCCTCGCGCTTGCAGTATAAATGCTGGCCCTCTTTATGCCGTCGGGC
TCACTACTCTTCGAGGTTTATCCCCACAAGTACTTCAAGACCGGGTACGC
GCCAATGGTGGAGGGGATGGGCGCGAGACACGCCTACTCCCAGAGCCCAC
CGCACTTGCTGCTTATGGGGTTTTCTTGGCCCAGCCTGGAGACGTGCATG
GAACATTACATATGTCGCTGGTACGCTCGTCTGTCAAACGTGGAGCTTGA
CGAGGCAAGCCTGGAGCGTCTCGTCCGCCTCGCGCTTGCAGTATAA
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