prot_H-elongata_contig117143.1341.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117143.1341.1
Unique Nameprot_H-elongata_contig117143.1341.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length42
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117143.1341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 13..29
e-value: 0.0019
score: 27.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 13..29
e-value: 1.1E-6
score: 28.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 14..29
score: 9.554
NoneNo IPR availableGENE3D4.10.60.10coord: 2..39
e-value: 4.8E-9
score: 38.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 8..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117143contigH-elongata_contig117143:55..180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117143.1341.1mRNA_H-elongata_contig117143.1341.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117143 40..180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117143.1341.1 ID=prot_H-elongata_contig117143.1341.1|Name=mRNA_H-elongata_contig117143.1341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MTAKTATYPSDIICFNCKERGHIKKNCKKPKTKPARATKWC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf