mRNA_H-elongata_contig117143.1341.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117143.1341.1
Unique NamemRNA_H-elongata_contig117143.1341.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117143.1341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117143contigH-elongata_contig117143:40..180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.7767696-UTR-H-elongata_contig117143:39..541622929681.7767696-UTR-H-elongata_contig117143:39..54Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117143 40..54 +
1691679117.6961465-UTR-H-elongata_contig117143:39..541691679117.6961465-UTR-H-elongata_contig117143:39..54Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117143 40..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.8001473-CDS-H-elongata_contig117143:54..1801622929681.8001473-CDS-H-elongata_contig117143:54..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117143 55..180 +
1691679117.7081559-CDS-H-elongata_contig117143:54..1801691679117.7081559-CDS-H-elongata_contig117143:54..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117143 55..180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117143.1341.1prot_H-elongata_contig117143.1341.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117143 55..180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117143.1341.1

>prot_H-elongata_contig117143.1341.1 ID=prot_H-elongata_contig117143.1341.1|Name=mRNA_H-elongata_contig117143.1341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MTAKTATYPSDIICFNCKERGHIKKNCKKPKTKPARATKWC*
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mRNA from alignment at H-elongata_contig117143:40..180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117143.1341.1 ID=mRNA_H-elongata_contig117143.1341.1|Name=mRNA_H-elongata_contig117143.1341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig117143:40..180+ (Himanthalia elongata Himel1 dioecious)
GGCCGTGGTATTGCCATGACTGCCAAGACAGCAACGTATCCATCGGATAT
AATCTGCTTCAACTGCAAGGAACGTGGACACATCAAAAAGAACTGCAAAA
AGCCTAAAACCAAGCCAGCAAGAGCAACGAAGTGGTGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig117143:40..180+

>mRNA_H-elongata_contig117143.1341.1 ID=mRNA_H-elongata_contig117143.1341.1|Name=mRNA_H-elongata_contig117143.1341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig117143:40..180+ (Himanthalia elongata Himel1 dioecious)
ATGACTGCCAAGACAGCAACGTATCCATCGGATATAATCTGCTTCAACTG
CAAGGAACGTGGACACATCAAAAAGAACTGCAAAAAGCCTAAAACCAAGC
CAGCAAGAGCAACGAAGTGGTGCTAAATGACTGCCAAGACAGCAACGTAT
CCATCGGATATAATCTGCTTCAACTGCAAGGAACGTGGACACATCAAAAA
GAACTGCAAAAAGCCTAAAACCAAGCCAGCAAGAGCAACGAAGTGGTGCT
AA
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