prot_H-elongata_contig58834.13384.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58834.13384.1
Unique Nameprot_H-elongata_contig58834.13384.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 8.720e-27
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 0
Query:    3 ERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKE 78
            ER+ L+K QAEAA+ AFT+ ++  V+DGNKI+LQGFGTFE R R GR GRNPRTGE ++IKATT PAFSASK FK+
Sbjct:   78 ERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKD 153          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.860e-24
Identity = 45/79 (56.96%), Postives = 65/79 (82.28%), Query Frame = 0
Query:    4 RAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQERE 82
            ++GL+KTQ +AA+ AF +T+++ V+DG K++L GFGTFESR+RA RQGRNP+TGE + I A+  PAFSA+K FK++ +E
Sbjct:   13 KSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKE 91          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: UPI001A0860CC (HU family DNA-binding protein n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A0860CC)

HSP 1 Score: 95.1 bits (235), Expect = 1.210e-22
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    3 ERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQERENQAHRLSIAPPPPSDT 98
            ++  + K +A+A V A  +TI+D VS GNK+ L GFGTFE+R R  R+GRNP+TGE I I ATTVPAFSA K FKE           +APP P  T
Sbjct:   12 QKVSVTKKEADAIVGAMVDTIMDTVSSGNKVTLVGFGTFEARNRQAREGRNPKTGEAIAIPATTVPAFSAGKQFKEM----------VAPPAPKAT 97          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: UPI000349D0E7 (HU family DNA-binding protein n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI000349D0E7)

HSP 1 Score: 93.2 bits (230), Expect = 5.200e-22
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    3 ERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 79
            ++A +NK QA+  + A  E IVD VS GNK+ L GFG+FE R+R  R+GRNP+TG+ +EI ATTVPAFSA K+F+E+
Sbjct:   12 KKASVNKKQADEVLTATLEVIVDAVSSGNKVTLVGFGSFEPRERKAREGRNPKTGDKMEIPATTVPAFSAGKSFRER 88          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: E6MGM2_9FIRM (DNA-binding protein HU n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 TaxID=887929 RepID=E6MGM2_9FIRM)

HSP 1 Score: 92.8 bits (229), Expect = 6.770e-22
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 0
Query:    1 MMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKE 78
            M E+ GL K  AE A+ AFT+TIV+ +  G+K++L GFGTF+ R RA RQG NPRT EPIEIKA+  PAF A K FK+
Sbjct:   10 MAEKTGLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQGLNPRTKEPIEIKASDAPAFKAGKAFKD 87          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: UPI001F2255C6 (HU family DNA-binding protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F2255C6)

HSP 1 Score: 93.2 bits (230), Expect = 6.870e-22
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    4 RAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQERENQA 85
            +A   K +A+A + A  ++I++ VS G K+ L GFGTFE+RQR  R+GRNP TGEPI+I ATTVPAFSA K FKE+    QA
Sbjct:   13 KASTTKKEADAVLTAVVDSIIEAVSAGEKVTLVGFGTFEARQRQAREGRNPSTGEPIQIPATTVPAFSAGKLFKEKVAPTQA 94          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: K9U4A1_CHRTP (Bacterial nucleoid protein Hbs n=3 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U4A1_CHRTP)

HSP 1 Score: 92.8 bits (229), Expect = 7.360e-22
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    3 ERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 79
            E+A + K QA+A + A  ETI+D VS G+K+ L GFG+FESR+R  R+GRNP+TG+ +EI AT VPAFSA K FKE+
Sbjct:   12 EKASVTKKQADAVLTAALETIIDAVSTGDKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATKVPAFSAGKLFKEK 88          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: UPI001BAF821F (HU family DNA-binding protein n=1 Tax=Acaryochloris marina TaxID=155978 RepID=UPI001BAF821F)

HSP 1 Score: 92.4 bits (228), Expect = 9.590e-22
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0
Query:    3 ERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFK 77
            ER+G  K QA+  + A TE I+D VS G K+ L GFG+FE+R R  R GRNP+TG+ ++IKATTVPAFSA K+FK
Sbjct:   12 ERSGATKKQADTILSAMTEAIIDSVSSGEKVTLVGFGSFEARDRKARDGRNPQTGKKLKIKATTVPAFSAGKDFK 86          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A7C3PJK0_9CYAN (HU family DNA-binding protein n=2 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PJK0_9CYAN)

HSP 1 Score: 92.0 bits (227), Expect = 1.360e-21
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 0
Query:    4 RAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 79
            +AG+ K  A+A + A TETI++ V+DG K+ L GFGTFE R R  R+GRNP TG+PI I ATTVP FSA K FKE+
Sbjct:   13 KAGVTKKDADAILSALTETIMEAVADGEKVTLVGFGTFEPRDRQAREGRNPSTGKPITIPATTVPGFSAGKLFKEK 88          
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: F4Y0D3_9CYAN (Bacterial nucleoid protein Hbs n=29 Tax=Moorena TaxID=1155738 RepID=F4Y0D3_9CYAN)

HSP 1 Score: 92.0 bits (227), Expect = 1.480e-21
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 0
Query:    3 ERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 79
            E+A + K QA+A + A  ETI++ VS+G+K+ L GFG+FESR+R  R+GRNP+TGE +EI AT VPAFSA K FKE+
Sbjct:   12 EKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREGRNPKTGEKMEIPATKVPAFSAGKVFKER 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST5_ECTSI8.720e-2768.42DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835Z9S8_9STRA3.860e-2456.96DNA-binding protein HU n=1 Tax=Tribonema minus Tax... [more]
UPI001A0860CC1.210e-2252.08HU family DNA-binding protein n=1 Tax=Synechococca... [more]
UPI000349D0E75.200e-2257.14HU family DNA-binding protein n=1 Tax=Pseudanabaen... [more]
E6MGM2_9FIRM6.770e-2258.97DNA-binding protein HU n=1 Tax=Pseudoramibacter al... [more]
UPI001F2255C66.870e-2256.10HU family DNA-binding protein n=1 Tax=Leptodesmis ... [more]
K9U4A1_CHRTP7.360e-2258.44Bacterial nucleoid protein Hbs n=3 Tax=Chroococcid... [more]
UPI001BAF821F9.590e-2258.67HU family DNA-binding protein n=1 Tax=Acaryochlori... [more]
A0A7C3PJK0_9CYAN1.360e-2159.21HU family DNA-binding protein n=2 Tax=Oscillatoria... [more]
F4Y0D3_9CYAN1.480e-2158.44Bacterial nucleoid protein Hbs n=29 Tax=Moorena Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000119Histone-like DNA-binding proteinPRINTSPR01727DNABINDINGHUcoord: 31..46
score: 45.24
coord: 49..62
score: 62.39
coord: 65..79
score: 35.9
IPR000119Histone-like DNA-binding proteinSMARTSM00411bhlneucoord: 1..81
e-value: 3.0E-24
score: 96.5
IPR000119Histone-like DNA-binding proteinPFAMPF00216Bac_DNA_bindingcoord: 2..79
e-value: 1.8E-24
score: 85.7
IPR000119Histone-like DNA-binding proteinPANTHERPTHR33175FAMILY NOT NAMEDcoord: 3..84
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilyGENE3D4.10.520.10coord: 1..84
e-value: 7.3E-27
score: 95.5
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilySUPERFAMILY47729IHF-like DNA-binding proteinscoord: 2..79
IPR020816Histone-like DNA-binding protein, conserved sitePROSITEPS00045HISTONE_LIKEcoord: 37..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58834contigH-elongata_contig58834:862..2023 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58834.13384.1mRNA_H-elongata_contig58834.13384.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58834 197..2050 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58834.13384.1 ID=prot_H-elongata_contig58834.13384.1|Name=mRNA_H-elongata_contig58834.13384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQ
GRNPRTGEPIEIKATTVPAFSASKNFKEQERENQAHRLSIAPPPPSDTPR
VRHPIVSLTRRILYISGMLAGSNEKRPLLPSEAQRFRTRWIYRYRVYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000119Hist_DNA-bd
IPR010992IHF-like_DNA-bd_dom_sf
IPR020816Histone-like_DNA-bd_CS