mRNA_H-elongata_contig58529.13338.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE) HSP 1 Score: 270 bits (691), Expect = 1.680e-82 Identity = 142/207 (68.60%), Postives = 166/207 (80.19%), Query Frame = 1
Query: 1 HQMVLAVCGGSPGERDELDPGNGAIGANIKSSPSSSSGGDSTAKDPTTAARRSAEVNTSAAAEAALQILSEVLKGGNVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSA----DQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFRV 609
H MVL++CGGSPG+RDELDPGNG+ G + S +++ + AK A SA+ NT AAAEAALQI S+ KGG VSLPESAYT VIRACC DGR DRARE LE+LK++G KPR+RTY+PLLEAYS+LDGRL+DCMA+WRE VS QG+TMTEREYL LIAACTR +DE+CFLEVMTEYM+DVLQPRSR SWDVLK WF+V
Sbjct: 176 HMMVLSLCGGSPGDRDELDPGNGSTGGHAASVERTAA---AVAKGRVEGA--SAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKV 377
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: D7FNK6_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK6_ECTSI) HSP 1 Score: 263 bits (672), Expect = 2.120e-82 Identity = 139/207 (67.15%), Postives = 162/207 (78.26%), Query Frame = 1
Query: 1 HQMVLAVCGGSPGERDELDPGNGAIGANIKSSPSSSSGGDSTAKDPTTAARRSAEVNTSAAAEAALQILSEVLKGGNVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSA----DQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFRV 609
H MVL++CGGSPG+RDELDPGNG G + S +++ + AK A SA+ NT AAAEAALQI S+ KGG VSLPESAYT VIRACC DGR DRARE LE+LK++ KPR+RTY+PLLEAYS+LDGRL+DCM +WRE VS QG+TMTEREYL LIAACTR +DE+CFLEVMTEYM+DVLQPRSR SWDVLK WF+
Sbjct: 175 HMMVLSLCGGSPGDRDELDPGNGLTGGHAASVERTAA---AVAKGRVEGA--SAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQADLKPRVRTYTPLLEAYSKLDGRLEDCMTLWREAVSPPAGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKAWFKA 376
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 4.750e-15 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 232 VSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFRV 609
V L E+AYT +IR C AR +L L+ G +PRLRT++P+L AY+ + ++ E + GL +TEREY+ LI T ++ + +M + EDVL+P RR+WDVL WF
Sbjct: 203 VKLQEAAYTSLIRICAARDDGSEARRLLNELRAQGEQPRLRTFTPILMAYTNCNDSTS-AFTLYDEMLQ--DGLDLTEREYMLLIRVATVCKEWDRGTVIMRSFAEDVLRPE-RRNWDVLVAWFEA 324
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: K3WUG8_GLOUD (Ribonuclease P n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUG8_GLOUD) HSP 1 Score: 79.7 bits (195), Expect = 6.610e-14 Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 1
Query: 166 VNTSAAAEAALQILSEVLK---------GGNVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
+N AE A +++++V + + + E+ Y+ +++ C G DR ++ L+ P+LRT++PLL AYS G L+ C+ W + + +TE EYL L+ CT D F ++ +Y + VLQP R +W VL++WF
Sbjct: 85 INICVKAEQASELMADVFQVYEDMRADAASSNGIDETIYSALVKLCSKAGDFDRCHALIAELEAKNVLPKLRTFAPLLHAYSEA-GDLEKCL--WAQSKLVAHDVEITEPEYLSLLKVCTTKGDAMQFYAILEQYTDAVLQPE-RSAWGVLREWF 235
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A662XMM7_9STRA (Ribonuclease P n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMM7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.620e-13 Identity = 44/140 (31.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 193 ALQILSEVLKGGNVS---LPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
A ++ ++ + G+ S + ES Y+ +I+ C D + E+L +++ P+LRT++PLL AYS + G L C +W L TE +Y+ L+ C + + E F + ++ED++QP +W+VLKDWF
Sbjct: 404 AFKVYEDMKQRGSASKHMVEESTYSALIKLCSKDQDFEACTELLAAMEAETVAPKLRTFTPLLLAYSEV-GNLDKC--VWVHEKMVSHALEPTETDYVALLRVCVKTGNAERFYAFLDAFIEDIMQP-GPSAWEVLKDWF 539
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: F0WAK8_9STRA (Ribonuclease P n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAK8_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 2.570e-10 Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 238 LPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
+ E+ T +IR C + DR + + ++ KP+LRT+S LL AY+ G L+ + + + + G+ MTE EY+ L+ C+ D F ++ E+ ++++ P SR +WD +K W+
Sbjct: 117 IDENTLTAMIRICVQSKQLDRCALLFDKMRNYDIKPKLRTFSSLLSAYAAA-GTLEKALEM--KSMIEQNGIKMTESEYIALLDGCSAESDRVLFRTMLDEFAQNIMVP-SRSTWDNIKHWY 234
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A662WIK6_9STRA (Ribonuclease P (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIK6_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.470e-9 Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 307 EVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
E+L +++ P+LRT++PLL AYS + G L C +W L TE +Y+ L+ C + + E F + ++ED++QP +W+VLKDWF
Sbjct: 3 ELLAAMEAEAVAPKLRTFTPLLLAYSEV-GNLDKC--VWVHEKMVSHALEPTETDYVALLRVCVKTGNAERFYAFLDAFIEDMMQP-GPSAWEVLKDWF 97
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A0P1APK3_PLAHL (Ribonuclease P n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APK3_PLAHL) HSP 1 Score: 64.3 bits (155), Expect = 1.360e-8 Identity = 37/125 (29.60%), Postives = 64/125 (51.20%), Query Frame = 1
Query: 229 NVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
N E Y+ +I+ C ++ ++ + PRLRT+SPLL+A S + G L+ C IW + +TE +Y+ L+ AC + + E F + +++++ QP + +W VL DWF
Sbjct: 114 NADSGEPIYSAMIKLCSKAQDFQMCETIISEMEAAKVLPRLRTFSPLLQALSDV-GNLEKC--IWVHKKLLSHQVELTEDDYVALLRACVKTGNAEHFYAFLNRFIDEIWQP-TLSTWKVLTDWF 234
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: D0MXI3_PHYIT (Ribonuclease P n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXI3_PHYIT) HSP 1 Score: 63.5 bits (153), Expect = 2.500e-8 Identity = 37/120 (30.83%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 244 ESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
E Y+ +I+ C D ++ ++ + P+LRT+SPLL+A S G L C+ + + +S + L +TE +Y+ L+ A + E F + +++++ QP S +WDVLK+WF
Sbjct: 126 EPMYSAMIKLCSKAQDFDTCEIIITEMEVAKVDPKLRTFSPLLQALSDA-GNLDKCIGVHEKLLSHE--LELTEDDYVALLRASVKAGSGERFYAFLDSFIDEIWQP-SLSTWDVLKEWF 241
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A3M6V9Q1_9STRA (Ribonuclease P n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9Q1_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.870e-7 Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 343 PRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 603
P+LR +SPLL+AYS G L+ C+ ++++ + + L E +Y+ L+ C + + E F + +++++ QP S +WDVLKDWF
Sbjct: 144 PKLRMFSPLLQAYSAA-GNLEKCIWVYKKLLLHE--LEPMEDDYVALLRVCVKTGNSERFYAFLNRFVDEIWQP-SLSTWDVLKDWF 226 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58529.13338.1 >prot_H-elongata_contig58529.13338.1 ID=prot_H-elongata_contig58529.13338.1|Name=mRNA_H-elongata_contig58529.13338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp MVLAVCGGSPGERDELDPGNGAIGANIKSSPSSSSGGDSTAKDPTTAARRback to top mRNA from alignment at H-elongata_contig58529:600..2435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58529.13338.1 ID=mRNA_H-elongata_contig58529.13338.1|Name=mRNA_H-elongata_contig58529.13338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1836bp|location=Sequence derived from alignment at H-elongata_contig58529:600..2435+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58529:600..2435+ >mRNA_H-elongata_contig58529.13338.1 ID=mRNA_H-elongata_contig58529.13338.1|Name=mRNA_H-elongata_contig58529.13338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig58529:600..2435+ (Himanthalia elongata Himel1 dioecious)back to top |