prot_H-elongata_contig58529.13338.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58529.13338.1
Unique Nameprot_H-elongata_contig58529.13338.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length201
Homology
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 3.180e-81
Identity = 141/205 (68.78%), Postives = 165/205 (80.49%), Query Frame = 0
Query:    1 MVLAVCGGSPGERDELDPGNGAIGANIKSSPSSSSGGDSTAKDPTTAARRSAEVNTSAAAEAALQILSEVLKGGNVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSA----DQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFRV 201
            MVL++CGGSPG+RDELDPGNG+ G +  S   +++   + AK     A  SA+ NT AAAEAALQI S+  KGG VSLPESAYT VIRACC DGR DRARE LE+LK++G KPR+RTY+PLLEAYS+LDGRL+DCMA+WRE VS      QG+TMTEREYL LIAACTR +DE+CFLEVMTEYM+DVLQPRSR SWDVLK WF+V
Sbjct:  178 MVLSLCGGSPGDRDELDPGNGSTGGHAASVERTAA---AVAKGRVEGA--SAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKV 377          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: D7FNK6_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK6_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 4.350e-81
Identity = 138/205 (67.32%), Postives = 161/205 (78.54%), Query Frame = 0
Query:    1 MVLAVCGGSPGERDELDPGNGAIGANIKSSPSSSSGGDSTAKDPTTAARRSAEVNTSAAAEAALQILSEVLKGGNVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSA----DQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFRV 201
            MVL++CGGSPG+RDELDPGNG  G +  S   +++   + AK     A  SA+ NT AAAEAALQI S+  KGG VSLPESAYT VIRACC DGR DRARE LE+LK++  KPR+RTY+PLLEAYS+LDGRL+DCM +WRE VS      QG+TMTEREYL LIAACTR +DE+CFLEVMTEYM+DVLQPRSR SWDVLK WF+ 
Sbjct:  177 MVLSLCGGSPGDRDELDPGNGLTGGHAASVERTAA---AVAKGRVEGA--SAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQADLKPRVRTYTPLLEAYSKLDGRLEDCMTLWREAVSPPAGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKAWFKA 376          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.500e-15
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 0
Query:   76 VSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFRV 201
            V L E+AYT +IR C        AR +L  L+  G +PRLRT++P+L AY+  +        ++ E +    GL +TEREY+ LI   T  ++ +    +M  + EDVL+P  RR+WDVL  WF  
Sbjct:  203 VKLQEAAYTSLIRICAARDDGSEARRLLNELRAQGEQPRLRTFTPILMAYTNCNDSTS-AFTLYDEMLQ--DGLDLTEREYMLLIRVATVCKEWDRGTVIMRSFAEDVLRPE-RRNWDVLVAWFEA 324          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: K3WUG8_GLOUD (Ribonuclease P n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUG8_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 6.280e-14
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0
Query:   54 VNTSAAAEAALQILSEVLK---------GGNVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            +N    AE A +++++V +           +  + E+ Y+ +++ C   G  DR   ++  L+     P+LRT++PLL AYS   G L+ C+  W +       + +TE EYL L+  CT   D   F  ++ +Y + VLQP  R +W VL++WF
Sbjct:   85 INICVKAEQASELMADVFQVYEDMRADAASSNGIDETIYSALVKLCSKAGDFDRCHALIAELEAKNVLPKLRTFAPLLHAYSEA-GDLEKCL--WAQSKLVAHDVEITEPEYLSLLKVCTTKGDAMQFYAILEQYTDAVLQPE-RSAWGVLREWF 235          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A662XMM7_9STRA (Ribonuclease P n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMM7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.440e-13
Identity = 44/140 (31.43%), Postives = 76/140 (54.29%), Query Frame = 0
Query:   63 ALQILSEVLKGGNVS---LPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            A ++  ++ + G+ S   + ES Y+ +I+ C  D   +   E+L +++     P+LRT++PLL AYS + G L  C  +W         L  TE +Y+ L+  C +  + E F   +  ++ED++QP    +W+VLKDWF
Sbjct:  404 AFKVYEDMKQRGSASKHMVEESTYSALIKLCSKDQDFEACTELLAAMEAETVAPKLRTFTPLLLAYSEV-GNLDKC--VWVHEKMVSHALEPTETDYVALLRVCVKTGNAERFYAFLDAFIEDIMQP-GPSAWEVLKDWF 539          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: F0WAK8_9STRA (Ribonuclease P n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAK8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.450e-10
Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 0
Query:   78 LPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            + E+  T +IR C    + DR   + + ++    KP+LRT+S LL AY+   G L+  + +  + +    G+ MTE EY+ L+  C+   D   F  ++ E+ ++++ P SR +WD +K W+
Sbjct:  117 IDENTLTAMIRICVQSKQLDRCALLFDKMRNYDIKPKLRTFSSLLSAYAAA-GTLEKALEM--KSMIEQNGIKMTESEYIALLDGCSAESDRVLFRTMLDEFAQNIMVP-SRSTWDNIKHWY 234          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A662WIK6_9STRA (Ribonuclease P (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIK6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.370e-9
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 0
Query:  101 EVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            E+L +++     P+LRT++PLL AYS + G L  C  +W         L  TE +Y+ L+  C +  + E F   +  ++ED++QP    +W+VLKDWF
Sbjct:    3 ELLAAMEAEAVAPKLRTFTPLLLAYSEV-GNLDKC--VWVHEKMVSHALEPTETDYVALLRVCVKTGNAERFYAFLDAFIEDMMQP-GPSAWEVLKDWF 97          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A0P1APK3_PLAHL (Ribonuclease P n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APK3_PLAHL)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-8
Identity = 37/125 (29.60%), Postives = 64/125 (51.20%), Query Frame = 0
Query:   75 NVSLPESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            N    E  Y+ +I+ C           ++  ++ +   PRLRT+SPLL+A S + G L+ C  IW         + +TE +Y+ L+ AC +  + E F   +  +++++ QP +  +W VL DWF
Sbjct:  114 NADSGEPIYSAMIKLCSKAQDFQMCETIISEMEAAKVLPRLRTFSPLLQALSDV-GNLEKC--IWVHKKLLSHQVELTEDDYVALLRACVKTGNAEHFYAFLNRFIDEIWQP-TLSTWKVLTDWF 234          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: D0MXI3_PHYIT (Ribonuclease P n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXI3_PHYIT)

HSP 1 Score: 63.5 bits (153), Expect = 2.390e-8
Identity = 37/120 (30.83%), Postives = 66/120 (55.00%), Query Frame = 0
Query:   80 ESAYTGVIRACCLDGRPDRAREVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            E  Y+ +I+ C      D    ++  ++ +   P+LRT+SPLL+A S   G L  C+ +  + +S +  L +TE +Y+ L+ A  +    E F   +  +++++ QP S  +WDVLK+WF
Sbjct:  126 EPMYSAMIKLCSKAQDFDTCEIIITEMEVAKVDPKLRTFSPLLQALSDA-GNLDKCIGVHEKLLSHE--LELTEDDYVALLRASVKAGSGERFYAFLDSFIDEIWQP-SLSTWDVLKEWF 241          
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Match: A0A3M6V9Q1_9STRA (Ribonuclease P n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9Q1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.760e-7
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 0
Query:  113 PRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLTMTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWF 199
            P+LR +SPLL+AYS   G L+ C+ ++++ +  +  L   E +Y+ L+  C +  + E F   +  +++++ QP S  +WDVLKDWF
Sbjct:  144 PKLRMFSPLLQAYSAA-GNLEKCIWVYKKLLLHE--LEPMEDDYVALLRVCVKTGNSERFYAFLNRFVDEIWQP-SLSTWDVLKDWF 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58529.13338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE3.180e-8168.78Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FNK6_ECTSI4.350e-8167.32PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2BW17_9STRA4.500e-1538.10Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35... [more]
K3WUG8_GLOUD6.280e-1430.32Ribonuclease P n=1 Tax=Globisporangium ultimum (st... [more]
A0A662XMM7_9STRA3.440e-1331.43Ribonuclease P n=1 Tax=Nothophytophthora sp. Chile... [more]
F0WAK8_9STRA2.450e-1030.33Ribonuclease P n=1 Tax=Albugo laibachii Nc14 TaxID... [more]
A0A662WIK6_9STRA2.370e-935.35Ribonuclease P (Fragment) n=1 Tax=Nothophytophthor... [more]
A0A0P1APK3_PLAHL1.300e-829.60Ribonuclease P n=1 Tax=Plasmopara halstedii TaxID=... [more]
D0MXI3_PHYIT2.390e-830.83Ribonuclease P n=2 Tax=Phytophthora infestans TaxI... [more]
A0A3M6V9Q1_9STRA2.760e-735.63Ribonuclease P n=2 Tax=Peronospora effusa TaxID=54... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 48..200
e-value: 2.6E-21
score: 76.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 82..113
e-value: 1.4E-5
score: 23.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..149
score: 6.445
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 10.512
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 32..201
e-value: 2.5E-22
score: 81.6
NoneNo IPR availablePANTHERPTHR13547UNCHARACTERIZEDcoord: 50..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58529contigH-elongata_contig58529:606..2435 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58529.13338.1mRNA_H-elongata_contig58529.13338.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58529 600..2435 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58529.13338.1 ID=prot_H-elongata_contig58529.13338.1|Name=mRNA_H-elongata_contig58529.13338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MVLAVCGGSPGERDELDPGNGAIGANIKSSPSSSSGGDSTAKDPTTAARR
SAEVNTSAAAEAALQILSEVLKGGNVSLPESAYTGVIRACCLDGRPDRAR
EVLESLKRSGGKPRLRTYSPLLEAYSRLDGRLQDCMAIWREGVSADQGLT
MTEREYLFLIAACTRGQDEECFLEVMTEYMEDVLQPRSRRSWDVLKDWFR
V
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf