mRNA_H-elongata_contig58421.13327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58421.13327.1
Unique NamemRNA_H-elongata_contig58421.13327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: D8LNN8_ECTSI (Eukaryotic translation initiation factor 3 subunit D n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN8_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 7.970e-133
Identity = 195/218 (89.45%), Postives = 203/218 (93.12%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGKRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQV 654
            +KVNG LFLDKR+ SQLDYLTVNETAVDPP PG+DP NNINAPDRLSLEATMINQNFSQQILK G RK+ EMPNPFFDKDEAAPG  PAAIGYRYRKFQLG+NY+VVARCEVHGT VK GMK GEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGAD MKIGLVSRV+K NAYEH VLGTQSYKPREFATQ+
Sbjct:  294 QKVNGTLFLDKREASQLDYLTVNETAVDPPTPGDDPTNNINAPDRLSLEATMINQNFSQQILKPGNRKNLEMPNPFFDKDEAAPGMTPAAIGYRYRKFQLGANYTVVARCEVHGTAVKPGMKAGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADQMKIGLVSRVTKANAYEHVVLGTQSYKPREFATQI 511          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A835Z0I8_9STRA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I8_9STRA)

HSP 1 Score: 306 bits (785), Expect = 1.200e-98
Identity = 152/224 (67.86%), Postives = 183/224 (81.70%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGKRKSFEMPNPFFDKDEAAPG-TAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRVR 669
            +KVNG LF+DKRD SQ D+LTVNETA D P   EDPEN IN PDRLSLEATMINQNFSQQILK G R +F+MPNPFF  +E A G + P+++ YRYR+F LG   ++VARCE+HG V     K GE+QYM+A+ALNEWDSKLAG V+WRQK+D+QRGA+LATELKNN+AKLAKWTAQSI++GAD MK+G VSR +K+NAY+H VLGTQ YKP +FA Q+ + VR
Sbjct:  288 QKVNGTLFMDKRDNSQFDFLTVNETAYDTPAVNEDPEN-INNPDRLSLEATMINQNFSQQILKDGARTTFDMPNPFFGDEEGAEGGSQPSSVAYRYRRFSLGPELNIVARCELHGIV----QKRGEQQYMTAYALNEWDSKLAGAVDWRQKLDSQRGAVLATELKNNAAKLAKWTAQSIIAGADQMKLGFVSRATKSNAYDHVVLGTQFYKPNDFARQITLDVR 506          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A6U1Q148_9STRA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q148_9STRA)

HSP 1 Score: 286 bits (732), Expect = 2.330e-90
Identity = 141/225 (62.67%), Postives = 179/225 (79.56%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQG---KRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGS-NYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVR 663
            +K++  LF DKRD SQ DYLTVNETA + P P +D  +NIN PDRL+LEATMINQNFSQ +LKQG   +RK  + PNPFFD+++A     PA + YRYR+F+ G  + +++ARCE++G+V+K G    ++QYM+ +ALNEWDSKL+   EWRQKIDTQRGAILATELKNNS KLAKWTAQSIL+GAD MKIG VSR S+TNAY+H +LGTQ +KP+EFATQ+ ++
Sbjct:  317 QKLDDTLFFDKRDNSQFDYLTVNETAYEAPAPNQDDPDNINNPDRLALEATMINQNFSQMVLKQGDESQRKEMDHPNPFFDEEDAEENMEPATLAYRYRRFKFGGGSINLIARCEINGSVLKRG----KQQYMTTYALNEWDSKLSNSEEWRQKIDTQRGAILATELKNNSCKLAKWTAQSILAGADQMKIGYVSRQSRTNAYDHVILGTQFFKPKEFATQITLQ 537          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2P8F0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8F0_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.110e-89
Identity = 146/230 (63.48%), Postives = 178/230 (77.39%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-------RKSFEMPNPFFDKDE-AAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
            K  NG LF DKRD+SQ D+LTV+ETA  PP+  +D    IN+P+RLSLEAT INQNFSQQIL+Q K       RK+F++PNPF+D+D+ AA G  PA++ Y+YR+F LG +  +V RCE+HG V     K GE+Q M+AFALNEWDSKL+GG+ WR KIDTQRGA+LATELKNNS KLAKWTAQSIL+GAD MKIG VSRV+K+NAYEH +L TQ YKP+EFA Q  + V
Sbjct:  295 KLPNGTLFFDKRDSSQFDFLTVSETANQPPLRSDDDPEGINSPERLSLEATTINQNFSQQILRQSKTPNNQSHRKNFDLPNPFYDEDDGAANGMEPASVAYKYRRFTLG-DIKLVCRCELHGLV----QKRGEEQTMTAFALNEWDSKLSGGINWRDKIDTQRGAVLATELKNNSCKLAKWTAQSILAGADQMKIGYVSRVTKSNAYEHVILATQFYKPKEFAQQTTLSV 519          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S1BPB9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPB9_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.040e-84
Identity = 135/228 (59.21%), Postives = 169/228 (74.12%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQG-----KRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRVR 669
            K    +LF DKRD SQ D+LTV+ETA +PP   ++  N IN PDRLSLEAT INQNFSQQIL+ G      RK F++PNPFFD+D+A  G  PA++ YRYR+F LG    +V RCE+HG V K G      QYM+AFALNEWD  L+GG+ WR+KID+QRGA+LATE+KNNS K+AKWTAQSILSGAD MK+G VSR ++TNAY+H ++GTQ Y+P + A Q  + V+
Sbjct:  339 KLPGNILFFDKRDASQFDFLTVSETAYNPPSKSDEDSNGINTPDRLSLEATTINQNFSQQILRSGPQGAASRKQFDVPNPFFDEDDA-DGMEPASVAYRYRRFALGDAIKLVCRCELHGIVSKGG----SDQYMTAFALNEWDPTLSGGISWREKIDSQRGAVLATEIKNNSCKVAKWTAQSILSGADQMKVGFVSRTNRTNAYDHAIIGTQFYRPVDLAMQTAMSVQ 561          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2CZZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZZ7_9STRA)

HSP 1 Score: 254 bits (650), Expect = 2.500e-80
Identity = 129/223 (57.85%), Postives = 168/223 (75.34%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-RKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
            +K+ G +F DKRD SQ DYLTV+ETA +PP   ED +  IN P++LSLEA++INQNF+QQIL   K R+  + PNPF+D++E+ PG  PA++ +RYRKF       +V RCE+HGTV K G    EKQYM+A+ALNEWDSK + G+EWRQKID QRGA+LATELKNNS KLAKWT QS+++GAD MKIG VSR  +T+ + H +L TQ YKP++F+ Q+ + V
Sbjct:  132 QKMGGSIFFDKRDDSQFDYLTVSETAYEPPAVSEDADA-INTPEKLSLEASVINQNFTQQILHGEKGRQQMDDPNPFYDEEES-PGMEPASVAFRYRKFTF-PGIELVVRCELHGTVTKRG----EKQYMTAYALNEWDSKHSAGIEWRQKIDQQRGAVLATELKNNSCKLAKWTCQSMIAGADQMKIGYVSRKGRTDPHHHQILATQFYKPQDFSMQINLSV 347          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2GV78_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GV78_9STRA)

HSP 1 Score: 256 bits (653), Expect = 4.140e-80
Identity = 137/232 (59.05%), Postives = 168/232 (72.41%), Query Frame = 1
Query:   10 NGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-RKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVK----AGMKPGEKQ-YMSAFALNEWDSKLAGG-------VEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
            +G LF DKRD+SQ DYLTVNETA +PP   +D  + IN P+RLSLEATMINQNF+QQILK  K R +F++PNPF+D D+   G  PA++ YRYRKF LG    +VAR E+HG V K    A +  G+   YM+A+ALNE+DS    G       + WR KID+QRGA+LATELKNNS KLAKWTAQS+L+GA  MKIG VSRVS  NAYEH VL TQ Y+P++FATQ+ + V
Sbjct:  164 SGALFFDKRDSSQFDYLTVNETANNPPSANDDDTDGINTPERLSLEATMINQNFTQQILKSSKTRTNFDLPNPFYDPDDN-DGMEPASVAYRYRKFDLGDGIQLVARTELHGVVKKKAAGAAVSSGDDPLYMTAYALNEFDSTKGPGHAPPSASINWRDKIDSQRGAVLATELKNNSFKLAKWTAQSVLAGASQMKIGFVSRVSPKNAYEHTVLATQFYRPKDFATQITLSV 394          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A8J2SUE1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUE1_9STRA)

HSP 1 Score: 259 bits (661), Expect = 7.080e-80
Identity = 138/240 (57.50%), Postives = 172/240 (71.67%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGED------------------PENNINAPDRLSLEATMINQNFSQQILKQGKRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
            +K++G+L  DKRDT+  DYLTV+ET+ DPP   E+                  P ++IN PD+LS+EATMINQNFSQQIL     +   +PNPF D + A     PA++ YRYRKFQLG  +++VAR EVH  V K G    + Q M+AFALNEWDSKL+GGVEWRQKID QRGA+LATELKNNS KLA+WTAQSIL+GA+ MK+G VSRV++TN Y+H VL TQ YKP+EFATQ+ + V
Sbjct:  290 QKLDGVLVFDKRDTANFDYLTVSETSHDPPKSLEEIEEAKRFDRRRNKKEDDEPTSDINTPDKLSIEATMINQNFSQQILSDKAPEKMSLPNPFADTENAE--AKPASLAYRYRKFQLGE-HALVARTEVHAVVDKRG----DLQKMTAFALNEWDSKLSGGVEWRQKIDAQRGAVLATELKNNSCKLARWTAQSILAGAEQMKLGYVSRVARTNPYDHVVLATQFYKPKEFATQITLNV 522          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2EJG1_9STRA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJG1_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.720e-79
Identity = 135/231 (58.44%), Postives = 168/231 (72.73%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-RKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEK-QYMSAFALNEWDSKLAGG-------VEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
            +K+ G+LF DKRD+SQ DYLTVNETA +PP   +D  + IN P+RLSLEATMINQNF+QQILK  K R +F++PNPF+D D+   G  PA++ YRYRKF LG    +VAR E+HG V K      E  QYM+A+ALNE+DS    G       + WR KID+QRGA+LATELKNNS KLAKWTAQS+L+GA  MKIG VSR +  NAYEH +L TQ Y+P++FATQ+ + V
Sbjct:  294 QKLPGLLFFDKRDSSQFDYLTVNETANNPPSKSDDDPDGINTPERLSLEATMINQNFTQQILKSSKTRTNFDLPNPFYDPDDN-DGMEPASVAYRYRKFDLGDGIQLVARTELHGLVKKKTTGGSEDTQYMTAYALNEFDSAKGPGHAPSTASINWRDKIDSQRGAVLATELKNNSFKLAKWTAQSVLAGASQMKIGFVSRAAPKNAYEHTILATQFYRPKDFATQITLSV 523          
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: F0YJC3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC3_AURAN)

HSP 1 Score: 254 bits (650), Expect = 1.790e-78
Identity = 134/223 (60.09%), Postives = 169/223 (75.78%), Query Frame = 1
Query:    1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGKR-KSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
            +K++G L  DKRDT+  D+LTV+ET+ +PP     P + IN P++LS+EATMINQNFSQQILK     +   +PNPF D   A   + PA++ YRYRKF LG  +++VAR E+HG V K G    EK  M+A+ LNEWDSKL+GGVEWRQKID+QRGA+LATELKNNS KLA+WTAQSIL+GA+ MK+G VSRV++TN Y+H VL TQ YKPREFATQ+ + V
Sbjct:  289 QKLDGTLVFDKRDTAAFDFLTVSETSHEPP-----PADEINTPEKLSIEATMINQNFSQQILKTDPAPEKMALPNPFAD---AESESKPASMAYRYRKFALGE-HTIVARTELHGLVEKRG----EKHKMTAYCLNEWDSKLSGGVEWRQKIDSQRGAVLATELKNNSCKLARWTAQSILAGAEQMKLGYVSRVARTNPYDHVVLATQFYKPREFATQITLNV 498          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNN8_ECTSI7.970e-13389.45Eukaryotic translation initiation factor 3 subunit... [more]
A0A835Z0I8_9STRA1.200e-9867.86Eukaryotic translation initiation factor 3 subunit... [more]
A0A6U1Q148_9STRA2.330e-9062.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2P8F0_9STRA2.110e-8963.48Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1BPB9_9STRA1.040e-8459.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2CZZ7_9STRA2.500e-8057.85Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2GV78_9STRA4.140e-8059.05Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A8J2SUE1_9STRA7.080e-8057.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2EJG1_9STRA2.720e-7958.44Eukaryotic translation initiation factor 3 subunit... [more]
F0YJC3_AURAN1.790e-7860.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58421contigH-elongata_contig58421:273..3596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.5
Seed ortholog evalue4.2e-105
Seed eggNOG ortholog2880.D8LNN8
Preferred nameEIF3D
KEGG koko:K02987,ko:K03251,ko:K10136
KEGG Pathwayko03010,ko03013,ko04115,map03010,map03013,map04115
KEGG ModuleM00177,M00179
GOsGO:0000339,GO:0001732,GO:0002181,GO:0002183,GO:0002191,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005829,GO:0005852,GO:0005856,GO:0005911,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006470,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0015630,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016282,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032879,GO:0032880,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070993,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0075525,GO:0080090,GO:0090056,GO:0097159,GO:0098808,GO:0098827,GO:0104004,GO:0140096,GO:1900180,GO:1900182,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901566,GO:1901576,GO:1902325,GO:1902415,GO:1902416,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2479@1,KOG2479@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03012
Hectar predicted targeting categoryother localisation
Exons5
Model size681
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58421.13327.1prot_H-elongata_contig58421.13327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58421 273..3581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.4980533-CDS-H-elongata_contig58421:272..3901622930947.4980533-CDS-H-elongata_contig58421:272..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 273..390 -
1691679636.1987243-CDS-H-elongata_contig58421:272..3901691679636.1987243-CDS-H-elongata_contig58421:272..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 273..390 -
1622930947.5189998-CDS-H-elongata_contig58421:1459..15601622930947.5189998-CDS-H-elongata_contig58421:1459..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 1460..1560 -
1691679636.2211654-CDS-H-elongata_contig58421:1459..15601691679636.2211654-CDS-H-elongata_contig58421:1459..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 1460..1560 -
1622930947.5369627-CDS-H-elongata_contig58421:2113..22731622930947.5369627-CDS-H-elongata_contig58421:2113..2273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 2114..2273 -
1691679636.2337828-CDS-H-elongata_contig58421:2113..22731691679636.2337828-CDS-H-elongata_contig58421:2113..2273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 2114..2273 -
1622930947.5539038-CDS-H-elongata_contig58421:2812..29101622930947.5539038-CDS-H-elongata_contig58421:2812..2910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 2813..2910 -
1691679636.244539-CDS-H-elongata_contig58421:2812..29101691679636.244539-CDS-H-elongata_contig58421:2812..2910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 2813..2910 -
1622930947.5677774-CDS-H-elongata_contig58421:3392..35811622930947.5677774-CDS-H-elongata_contig58421:3392..3581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 3393..3581 -
1691679636.25488-CDS-H-elongata_contig58421:3392..35811691679636.25488-CDS-H-elongata_contig58421:3392..3581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58421 3393..3581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.5841105-UTR-H-elongata_contig58421:3581..35961622930947.5841105-UTR-H-elongata_contig58421:3581..3596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58421 3582..3596 -
1691679636.2719676-UTR-H-elongata_contig58421:3581..35961691679636.2719676-UTR-H-elongata_contig58421:3581..3596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58421 3582..3596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58421.13327.1

>prot_H-elongata_contig58421.13327.1 ID=prot_H-elongata_contig58421.13327.1|Name=mRNA_H-elongata_contig58421.13327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
MLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQ
NFSQQILKQGKRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYS
VVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQR
GAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLG
TQSYKPREFATQVRVRVRYKP*
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mRNA from alignment at H-elongata_contig58421:273..3596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58421.13327.1 ID=mRNA_H-elongata_contig58421.13327.1|Name=mRNA_H-elongata_contig58421.13327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3324bp|location=Sequence derived from alignment at H-elongata_contig58421:273..3596- (Himanthalia elongata Himel1 dioecious)
AAAAAGGTTAATGGCATGCTTTTCCTGGACAAGCGCGATACGAGCCAGCT GGATTACCTGACGGTGAACGAGACGGCTGTGGACCCTCCAGTACCGGGAG AAGACCCCGAGAACAACATCAACGCTCCCGACCGCCTCAGCCTAGAGGCA ACCATGATCAACCAGAATTTCTCTCAGCAGATTCTCAAGCAGGGCAAGCG CAAAGTAAGCGGCGGTTCAAGCTACCGTCTGTGATGCAATAGTGCTCTTT ATACAGTAGGATAGTAGACTGCAGTATCGACATAGTACTGTAAATTAATG TTGTACCATGCAGTATATGGTATATGGTATGGTATTAGGGTTAGGGTTAG GGTATTTTTGAATTTTCAAGATACCAAGAGGCACAGGCACTTGGGTATTC CCTGAGCTCGTCCTTTTGATATTTTTGGAATGATTGTCCCCACAACAAAG TCATTTGACGAAATCTCGCCACTCGCCACCCACAAGAAAGTCTGGATCGT TTAGTGTAGGGGTGAATCACGTAAATCGATCGGATAATGACTATAATGAC TATAATCGATTGGATAATTATCGGATAATGACTGGAAATCGGGTATAATA AATGGAATCTCCGTGTTGAGTGTTTAAATCTTGAAAATCAAATTTAATAT TTAATATTTAATATTTATTATTTATTTTTGGTGCAGAGTTTCGAGATGCC GAACCCCTTCTTCGACAAGGACGAGGCTGCACCTGGTACGGCCCCAGCCG CAATCGGTTATCGTTACCGCAAGTTCCAGTTGGGGTAAGTGGGATGAAGG AATTGGACGAGATATGAGGGATAAAATAAATATAATTTGGGGTAATGATT AGAGTAACTGTTAGAGTTAGCTAAAAAAAAAACGTACGGGGCGGGGCGCC TTGCTAGCCCCCCTCGTCGAAACGTAGGGTACAGTAATCCCGAATCTTTG CTACCGCCCAAGAGTAGGGATTTTAATGACATGGCATAAAGCAGGTCAAA CAAGCGAAATCGTTAAGTCCTTGGCATGATCTGATCGACAGCATCTGTTT TACAGGGCACACGCGACGCCACTACAGTTCTTGTAGTTCGTCTATATTAC CGATACCGATATAACCCTAACCCTAACCCTAACCCTATAACATACAAGGT ATGTGGTTGTCAGGTACCGAAGTTGCGTTTGTTGGCAGGTTACATTCGAG AGTCTCTTCAAAGAGATATTTTAGTTGGCCCGTGGTGTCATTATCATCAT TAATCCTAGCCCCAACCCTAACCGATGATGCCTTTGACTTGATTGCTTTG GTCGTTTTGATTGGGCAATCGAGGTCCAACTATTCGGTCGTTGCTCGGTG CGAAGTACATGGGACGGTCGTGAAGGCGGGCATGAAGCCTGGCGAGAAGC AGTACATGTCGGCCTTCGCTTTGAACGAGTGGGACTCAAAACTTGCCGGT GGTGTCGAATGGCGTCAGAAGATCGATACGCAGGTTACAACTATATTAAT GCATATACCTTTCAAGGGAGTAAGCGATTGGGTTAGGGTTGATGTTGATT TTAAAGTGATGATTGTAGATGATGCGTAATACGAGAGAGTATCAGTATGA TGTCACACATGGTATATGATGTATAAATGTATAATGGCGTCTCCAACCTG CGGCGGGTGGAATGCAATACATTATTTAAGACATTTAGCCTTCTACCCTT TATTTAAGACATCGATACAGTATCCTTATCCCTTGGTATCCTGTAGTAGT TTCTACCTGACGGTGACATAGTGATATGGTGAGGAGCTGATTTTATAGGG ATGCCTATAAAACGAAGCTCTCTACGTACTGCATACTAATATTAATATTA ACCCTAGCCCCAACCATAGTTACAGGTACCTCTTGTGTTCGACACGACGT TCTGGCAATTCTTGTACGACATTCCGAAATTCGTTTGCATATATTTTCTA CCGGTATGTCGTTTTTTCCGATAATATATCATTTATAATTTATCATTCCC TATCAAAACGTTTACGGAACTCCTTCATCTTGTCAGAGAGGGGCAATTCT CGCCACGGAATTGAAGAATAATTCGGCCAAGCTGGCGAAGTGGACGGCGC AGTCTATTTTGTCTGGCGCGGACCTGATGAAGATTGGGTAAGGGTCTAAA ATGGTCTACGAAGGTCTCCGAAGATTAAGGGTCTTTGAGTTATTTCTCGG TAGTGTAATATTAATATCCTATATTATATCATCAGAGATAAATAAATAGA TCGATCGATTGATAATTGGACATGGTCGGGAAGGGAAACAGTAGCGCCAT GAATAAAGGTTAGAGTTAGAGTTAGGGTTAGGGCTAGTTTTTTATTAGTA CGGTAGTGTAGGTACATATTAGACTATAGTAAATTGTGTTAGACTAGCTC TTATCACGTCATCTTTGGATTCCAACAGTAATATGTCATACCGGCCATAT CGGCTATGTGATATCTCGTACGACAGTTAAACGATTGTGTGGACAATCAA ACGATCTCGATGATAGTTACCCTAGCCCTAAAAGTTGGAAGCAACAAAAT GATCTAAAGCATTAACATGAACATCACCATCAGTAATGCTGTGCTCTGCT GTAGCAATATCTGCTGTAGCTGTAGCTGTATCTGCTGTAGCAGTATCAAA ATCATGCGCCCTGGAACAGAAAAGTTTCTTGCCCACCTAACTTTTAATAT TTTTGTAATACCCCTACCCTTCATCCTAACCCTAACCCTGACAGTCTCGT CCCAGTAGAGCGAGAATGGTTTTGGTTGCGCTCAAGAATATTTTTGTGAT AGTAAGTGTTCAGTTCAGTAGGGTCTACTTCTTCGTTTGTTTATCTTTCT GTCTCTCTTTAGGCTTTTTCTCGATGCTCTCAAGGCTATCAATGCTCTCA ATTCGTGTCGTATTTAGACATACATAACCCTAACCTTAACATAACCCTAA CCCTAACCATAACCCTAACCCAACCTGACCTTCTGTGCCAAGTATGTCAA GTACAGCGCTCTTTCTTGGAAGTGTTTGGAGTACTCGTGTATACGTTGCT GTTGAAACGCATTGTTATTACCTACCATTGTCATAACCATCGTTATTACC TACCATTGCCATAACCATCGTTATTACCTACCATCGTTATTGCCTACCAT TGTTATTGCCATAACCATCGTTATTGCGCCCACGATACCATGCTATGACA TGACAGTCTGGTGTCCCGAGTGAGCAAGACAAATGCGTACGAGCACTATG TACTGGGCACACAGAGCTACAAGCCAAGAGAGTTCGCTACCCAGGTTAGG GTTAGGGTACGGTACAAGCCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig58421:273..3596-

>mRNA_H-elongata_contig58421.13327.1 ID=mRNA_H-elongata_contig58421.13327.1|Name=mRNA_H-elongata_contig58421.13327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig58421:273..3596- (Himanthalia elongata Himel1 dioecious)
ATGCTTTTCCTGGACAAGCGCGATACGAGCCAGCTGGATTACCTGACGGT
GAACGAGACGGCTGTGGACCCTCCAGTACCGGGAGAAGACCCCGAGAACA
ACATCAACGCTCCCGACCGCCTCAGCCTAGAGGCAACCATGATCAACCAG
AATTTCTCTCAGCAGATTCTCAAGCAGGGCAAGCGCAAAATGCTTTTCCT
GGACAAGCGCGATACGAGCCAGCTGGATTACCTGACGGTGAACGAGACGG
CTGTGGACCCTCCAGTACCGGGAGAAGACCCCGAGAACAACATCAACGCT
CCCGACCGCCTCAGCCTAGAGGCAACCATGATCAACCAGAATTTCTCTCA
GCAGATTCTCAAGCAGGGCAAGCGCAAAAGTTTCGAGATGCCGAACCCCT
TCTTCGACAAGGACGAGGCTGCACCTGGTACGGCCCCAGCCGCAATCGGT
TATCGTTACCGCAAGTTCCAGTTGGGAGTTTCGAGATGCCGAACCCCTTC
TTCGACAAGGACGAGGCTGCACCTGGTACGGCCCCAGCCGCAATCGGTTA
TCGTTACCGCAAGTTCCAGTTGGGGTCCAACTATTCGGTCGTTGCTCGGT
GCGAAGTACATGGGACGGTCGTGAAGGCGGGCATGAAGCCTGGCGAGAAG
CAGTACATGTCGGCCTTCGCTTTGAACGAGTGGGACTCAAAACTTGCCGG
TGGTGTCGAATGGCGTCAGAAGATCGATACGCAGGTCCAACTATTCGGTC
GTTGCTCGGTGCGAAGTACATGGGACGGTCGTGAAGGCGGGCATGAAGCC
TGGCGAGAAGCAGTACATGTCGGCCTTCGCTTTGAACGAGTGGGACTCAA
AACTTGCCGGTGGTGTCGAATGGCGTCAGAAGATCGATACGCAGAGAGGG
GCAATTCTCGCCACGGAATTGAAGAATAATTCGGCCAAGCTGGCGAAGTG
GACGGCGCAGTCTATTTTGTCTGGCGCGGACCTGATGAAGATTGGAGAGG
GGCAATTCTCGCCACGGAATTGAAGAATAATTCGGCCAAGCTGGCGAAGT
GGACGGCGCAGTCTATTTTGTCTGGCGCGGACCTGATGAAGATTGGTCTG
GTGTCCCGAGTGAGCAAGACAAATGCGTACGAGCACTATGTACTGGGCAC
ACAGAGCTACAAGCCAAGAGAGTTCGCTACCCAGGTTAGGGTTAGGGTAC
GGTACAAGCCTTAATCTGGTGTCCCGAGTGAGCAAGACAAATGCGTACGA
GCACTATGTACTGGGCACACAGAGCTACAAGCCAAGAGAGTTCGCTACCC
AGGTTAGGGTTAGGGTACGGTACAAGCCTTAA
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