mRNA_H-elongata_contig58421.13327.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: D8LNN8_ECTSI (Eukaryotic translation initiation factor 3 subunit D n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN8_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 7.970e-133 Identity = 195/218 (89.45%), Postives = 203/218 (93.12%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGKRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQV 654
+KVNG LFLDKR+ SQLDYLTVNETAVDPP PG+DP NNINAPDRLSLEATMINQNFSQQILK G RK+ EMPNPFFDKDEAAPG PAAIGYRYRKFQLG+NY+VVARCEVHGT VK GMK GEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGAD MKIGLVSRV+K NAYEH VLGTQSYKPREFATQ+
Sbjct: 294 QKVNGTLFLDKREASQLDYLTVNETAVDPPTPGDDPTNNINAPDRLSLEATMINQNFSQQILKPGNRKNLEMPNPFFDKDEAAPGMTPAAIGYRYRKFQLGANYTVVARCEVHGTAVKPGMKAGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADQMKIGLVSRVTKANAYEHVVLGTQSYKPREFATQI 511
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A835Z0I8_9STRA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I8_9STRA) HSP 1 Score: 306 bits (785), Expect = 1.200e-98 Identity = 152/224 (67.86%), Postives = 183/224 (81.70%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGKRKSFEMPNPFFDKDEAAPG-TAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRVR 669
+KVNG LF+DKRD SQ D+LTVNETA D P EDPEN IN PDRLSLEATMINQNFSQQILK G R +F+MPNPFF +E A G + P+++ YRYR+F LG ++VARCE+HG V K GE+QYM+A+ALNEWDSKLAG V+WRQK+D+QRGA+LATELKNN+AKLAKWTAQSI++GAD MK+G VSR +K+NAY+H VLGTQ YKP +FA Q+ + VR
Sbjct: 288 QKVNGTLFMDKRDNSQFDFLTVNETAYDTPAVNEDPEN-INNPDRLSLEATMINQNFSQQILKDGARTTFDMPNPFFGDEEGAEGGSQPSSVAYRYRRFSLGPELNIVARCELHGIV----QKRGEQQYMTAYALNEWDSKLAGAVDWRQKLDSQRGAVLATELKNNAAKLAKWTAQSIIAGADQMKLGFVSRATKSNAYDHVVLGTQFYKPNDFARQITLDVR 506
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A6U1Q148_9STRA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q148_9STRA) HSP 1 Score: 286 bits (732), Expect = 2.330e-90 Identity = 141/225 (62.67%), Postives = 179/225 (79.56%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQG---KRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGS-NYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVR 663
+K++ LF DKRD SQ DYLTVNETA + P P +D +NIN PDRL+LEATMINQNFSQ +LKQG +RK + PNPFFD+++A PA + YRYR+F+ G + +++ARCE++G+V+K G ++QYM+ +ALNEWDSKL+ EWRQKIDTQRGAILATELKNNS KLAKWTAQSIL+GAD MKIG VSR S+TNAY+H +LGTQ +KP+EFATQ+ ++
Sbjct: 317 QKLDDTLFFDKRDNSQFDYLTVNETAYEAPAPNQDDPDNINNPDRLALEATMINQNFSQMVLKQGDESQRKEMDHPNPFFDEEDAEENMEPATLAYRYRRFKFGGGSINLIARCEINGSVLKRG----KQQYMTTYALNEWDSKLSNSEEWRQKIDTQRGAILATELKNNSCKLAKWTAQSILAGADQMKIGYVSRQSRTNAYDHVILGTQFFKPKEFATQITLQ 537
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2P8F0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8F0_9STRA) HSP 1 Score: 283 bits (724), Expect = 2.110e-89 Identity = 146/230 (63.48%), Postives = 178/230 (77.39%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-------RKSFEMPNPFFDKDE-AAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
K NG LF DKRD+SQ D+LTV+ETA PP+ +D IN+P+RLSLEAT INQNFSQQIL+Q K RK+F++PNPF+D+D+ AA G PA++ Y+YR+F LG + +V RCE+HG V K GE+Q M+AFALNEWDSKL+GG+ WR KIDTQRGA+LATELKNNS KLAKWTAQSIL+GAD MKIG VSRV+K+NAYEH +L TQ YKP+EFA Q + V
Sbjct: 295 KLPNGTLFFDKRDSSQFDFLTVSETANQPPLRSDDDPEGINSPERLSLEATTINQNFSQQILRQSKTPNNQSHRKNFDLPNPFYDEDDGAANGMEPASVAYKYRRFTLG-DIKLVCRCELHGLV----QKRGEEQTMTAFALNEWDSKLSGGINWRDKIDTQRGAVLATELKNNSCKLAKWTAQSILAGADQMKIGYVSRVTKSNAYEHVILATQFYKPKEFAQQTTLSV 519
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S1BPB9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPB9_9STRA) HSP 1 Score: 272 bits (696), Expect = 1.040e-84 Identity = 135/228 (59.21%), Postives = 169/228 (74.12%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQG-----KRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRVR 669
K +LF DKRD SQ D+LTV+ETA +PP ++ N IN PDRLSLEAT INQNFSQQIL+ G RK F++PNPFFD+D+A G PA++ YRYR+F LG +V RCE+HG V K G QYM+AFALNEWD L+GG+ WR+KID+QRGA+LATE+KNNS K+AKWTAQSILSGAD MK+G VSR ++TNAY+H ++GTQ Y+P + A Q + V+
Sbjct: 339 KLPGNILFFDKRDASQFDFLTVSETAYNPPSKSDEDSNGINTPDRLSLEATTINQNFSQQILRSGPQGAASRKQFDVPNPFFDEDDA-DGMEPASVAYRYRRFALGDAIKLVCRCELHGIVSKGG----SDQYMTAFALNEWDPTLSGGISWREKIDSQRGAVLATEIKNNSCKVAKWTAQSILSGADQMKVGFVSRTNRTNAYDHAIIGTQFYRPVDLAMQTAMSVQ 561
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2CZZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZZ7_9STRA) HSP 1 Score: 254 bits (650), Expect = 2.500e-80 Identity = 129/223 (57.85%), Postives = 168/223 (75.34%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-RKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
+K+ G +F DKRD SQ DYLTV+ETA +PP ED + IN P++LSLEA++INQNF+QQIL K R+ + PNPF+D++E+ PG PA++ +RYRKF +V RCE+HGTV K G EKQYM+A+ALNEWDSK + G+EWRQKID QRGA+LATELKNNS KLAKWT QS+++GAD MKIG VSR +T+ + H +L TQ YKP++F+ Q+ + V
Sbjct: 132 QKMGGSIFFDKRDDSQFDYLTVSETAYEPPAVSEDADA-INTPEKLSLEASVINQNFTQQILHGEKGRQQMDDPNPFYDEEES-PGMEPASVAFRYRKFTF-PGIELVVRCELHGTVTKRG----EKQYMTAYALNEWDSKHSAGIEWRQKIDQQRGAVLATELKNNSCKLAKWTCQSMIAGADQMKIGYVSRKGRTDPHHHQILATQFYKPQDFSMQINLSV 347
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2GV78_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GV78_9STRA) HSP 1 Score: 256 bits (653), Expect = 4.140e-80 Identity = 137/232 (59.05%), Postives = 168/232 (72.41%), Query Frame = 1
Query: 10 NGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-RKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVK----AGMKPGEKQ-YMSAFALNEWDSKLAGG-------VEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
+G LF DKRD+SQ DYLTVNETA +PP +D + IN P+RLSLEATMINQNF+QQILK K R +F++PNPF+D D+ G PA++ YRYRKF LG +VAR E+HG V K A + G+ YM+A+ALNE+DS G + WR KID+QRGA+LATELKNNS KLAKWTAQS+L+GA MKIG VSRVS NAYEH VL TQ Y+P++FATQ+ + V
Sbjct: 164 SGALFFDKRDSSQFDYLTVNETANNPPSANDDDTDGINTPERLSLEATMINQNFTQQILKSSKTRTNFDLPNPFYDPDDN-DGMEPASVAYRYRKFDLGDGIQLVARTELHGVVKKKAAGAAVSSGDDPLYMTAYALNEFDSTKGPGHAPPSASINWRDKIDSQRGAVLATELKNNSFKLAKWTAQSVLAGASQMKIGFVSRVSPKNAYEHTVLATQFYRPKDFATQITLSV 394
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A8J2SUE1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUE1_9STRA) HSP 1 Score: 259 bits (661), Expect = 7.080e-80 Identity = 138/240 (57.50%), Postives = 172/240 (71.67%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGED------------------PENNINAPDRLSLEATMINQNFSQQILKQGKRKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
+K++G+L DKRDT+ DYLTV+ET+ DPP E+ P ++IN PD+LS+EATMINQNFSQQIL + +PNPF D + A PA++ YRYRKFQLG +++VAR EVH V K G + Q M+AFALNEWDSKL+GGVEWRQKID QRGA+LATELKNNS KLA+WTAQSIL+GA+ MK+G VSRV++TN Y+H VL TQ YKP+EFATQ+ + V
Sbjct: 290 QKLDGVLVFDKRDTANFDYLTVSETSHDPPKSLEEIEEAKRFDRRRNKKEDDEPTSDINTPDKLSIEATMINQNFSQQILSDKAPEKMSLPNPFADTENAE--AKPASLAYRYRKFQLGE-HALVARTEVHAVVDKRG----DLQKMTAFALNEWDSKLSGGVEWRQKIDAQRGAVLATELKNNSCKLARWTAQSILAGAEQMKLGYVSRVARTNPYDHVVLATQFYKPKEFATQITLNV 522
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: A0A7S2EJG1_9STRA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJG1_9STRA) HSP 1 Score: 257 bits (657), Expect = 2.720e-79 Identity = 135/231 (58.44%), Postives = 168/231 (72.73%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGK-RKSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEK-QYMSAFALNEWDSKLAGG-------VEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
+K+ G+LF DKRD+SQ DYLTVNETA +PP +D + IN P+RLSLEATMINQNF+QQILK K R +F++PNPF+D D+ G PA++ YRYRKF LG +VAR E+HG V K E QYM+A+ALNE+DS G + WR KID+QRGA+LATELKNNS KLAKWTAQS+L+GA MKIG VSR + NAYEH +L TQ Y+P++FATQ+ + V
Sbjct: 294 QKLPGLLFFDKRDSSQFDYLTVNETANNPPSKSDDDPDGINTPERLSLEATMINQNFTQQILKSSKTRTNFDLPNPFYDPDDN-DGMEPASVAYRYRKFDLGDGIQLVARTELHGLVKKKTTGGSEDTQYMTAYALNEFDSAKGPGHAPSTASINWRDKIDSQRGAVLATELKNNSFKLAKWTAQSVLAGASQMKIGFVSRAAPKNAYEHTILATQFYRPKDFATQITLSV 523
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Match: F0YJC3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC3_AURAN) HSP 1 Score: 254 bits (650), Expect = 1.790e-78 Identity = 134/223 (60.09%), Postives = 169/223 (75.78%), Query Frame = 1
Query: 1 KKVNGMLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQNFSQQILKQGKR-KSFEMPNPFFDKDEAAPGTAPAAIGYRYRKFQLGSNYSVVARCEVHGTVVKAGMKPGEKQYMSAFALNEWDSKLAGGVEWRQKIDTQRGAILATELKNNSAKLAKWTAQSILSGADLMKIGLVSRVSKTNAYEHYVLGTQSYKPREFATQVRVRV 666
+K++G L DKRDT+ D+LTV+ET+ +PP P + IN P++LS+EATMINQNFSQQILK + +PNPF D A + PA++ YRYRKF LG +++VAR E+HG V K G EK M+A+ LNEWDSKL+GGVEWRQKID+QRGA+LATELKNNS KLA+WTAQSIL+GA+ MK+G VSRV++TN Y+H VL TQ YKPREFATQ+ + V
Sbjct: 289 QKLDGTLVFDKRDTAAFDFLTVSETSHEPP-----PADEINTPEKLSIEATMINQNFSQQILKTDPAPEKMALPNPFAD---AESESKPASMAYRYRKFALGE-HTIVARTELHGLVEKRG----EKHKMTAYCLNEWDSKLSGGVEWRQKIDSQRGAVLATELKNNSCKLARWTAQSILAGAEQMKLGYVSRVARTNPYDHVVLATQFYKPREFATQITLNV 498 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58421.13327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58421.13327.1 >prot_H-elongata_contig58421.13327.1 ID=prot_H-elongata_contig58421.13327.1|Name=mRNA_H-elongata_contig58421.13327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp MLFLDKRDTSQLDYLTVNETAVDPPVPGEDPENNINAPDRLSLEATMINQback to top mRNA from alignment at H-elongata_contig58421:273..3596- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58421.13327.1 ID=mRNA_H-elongata_contig58421.13327.1|Name=mRNA_H-elongata_contig58421.13327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3324bp|location=Sequence derived from alignment at H-elongata_contig58421:273..3596- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58421:273..3596- >mRNA_H-elongata_contig58421.13327.1 ID=mRNA_H-elongata_contig58421.13327.1|Name=mRNA_H-elongata_contig58421.13327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig58421:273..3596- (Himanthalia elongata Himel1 dioecious)back to top |