prot_H-elongata_contig5818.13297.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5818.13297.1
Unique Nameprot_H-elongata_contig5818.13297.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length143
Homology
BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Match: A0A6H5L5P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P6_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.590e-57
Identity = 92/143 (64.34%), Postives = 118/143 (82.52%), Query Frame = 0
Query:    1 TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDAIFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKVVFFPYSMVGSREDFILGYGLLLRVMSMGMMPAIEQERKIAIYW 143
            T NITRG+LE++PG++ MWRVPH+VKDA+GNSA  FY+ I VEE+DVL+++ G+ E L ++  E   +RIAV  LLV+LLFP++W+VL+F+R VLAA+KVVFFPYSM+ SREDF LGYG LLRV SMGM  AI++ERKIA YW
Sbjct:   64 TANITRGALEKIPGREGMWRVPHNVKDASGNSAKVFYYKIAVEEVDVLESLQGSAEILHQEMSELFLMRIAVAALLVLLLFPLVWRVLMFVRVVLAAAKVVFFPYSMISSREDFKLGYGFLLRVKSMGMGSAIDRERKIATYW 206          
BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.440e-42
Identity = 75/117 (64.10%), Postives = 100/117 (85.47%), Query Frame = 0
Query:    1 TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDAIFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKVVFFPYSMVGSREDFILG 117
            T NITRG+LE++PG+++MWRVPH+VKDA+GNSA  FY+NI VEE+DVL+++ G+ E LQ++  E   +RIAV  LLV+LLFP++W+VL+F+R VLAA+KVVFFPYSM+ SREDF LG
Sbjct:  486 TANITRGALEKIPGRERMWRVPHNVKDASGNSAKVFYYNIAVEEVDVLESLQGSAEILQQEMSELFFMRIAVAALLVLLLFPLVWRVLMFVRVVLAAAKVVFFPYSMISSREDFKLG 602          
BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Match: A0A835ZFQ6_9STRA (EGF_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.700e-21
Identity = 53/143 (37.06%), Postives = 85/143 (59.44%), Query Frame = 0
Query:    1 TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDAIFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKVVFFPYSMVGSREDFILGYGLLLRVMSMGMMPAIEQERKIAIYW 143
            T +I +G LER P ++  WR+PH+V DA GN A   Y+ I+V ++D+L  + G       D +  + + +   VL  I    + W +L +++ ++ A K    PYS+V S+EDF +G+ L+LRV+SMGM+P  E+ R+ A  W
Sbjct:  821 TTDIQQGGLERDPARNYTWRIPHNVADAEGNVAETVYYVIQVTQVDMLSTLTGVTV----DPVMYQRVLLGGTVLAAIAALALAWWLLQWVQPLIQACKYWLNPYSLVNSKEDFDMGHDLVLRVVSMGMLPQKERRRRTAARW 959          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5P6_9PHAE1.590e-5764.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY1_ECTSI3.440e-4264.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFQ6_9STRA4.700e-2137.06EGF_3 domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 134..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 115..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..69
NoneNo IPR availableTMHMMTMhelixcoord: 100..122
NoneNo IPR availableTMHMMTMhelixcoord: 68..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5818contigH-elongata_contig5818:7368..9243 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5818.13297.1mRNA_H-elongata_contig5818.13297.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5818 7368..9243 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5818.13297.1 ID=prot_H-elongata_contig5818.13297.1|Name=mRNA_H-elongata_contig5818.13297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDA
IFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKV
VFFPYSMVGSREDFILGYGLLLRVMSMGMMPAIEQERKIAIYW
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