mRNA_H-elongata_contig5818.13297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5818.13297.1
Unique NamemRNA_H-elongata_contig5818.13297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Match: A0A6H5L5P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P6_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.590e-57
Identity = 92/143 (64.34%), Postives = 118/143 (82.52%), Query Frame = 1 
Query:    1 TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDAIFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKVVFFPYSMVGSREDFILGYGLLLRVMSMGMMPAIEQERKIAIYW 429
            T NITRG+LE++PG++ MWRVPH+VKDA+GNSA  FY+ I VEE+DVL+++ G+ E L ++  E   +RIAV  LLV+LLFP++W+VL+F+R VLAA+KVVFFPYSM+ SREDF LGYG LLRV SMGM  AI++ERKIA YW
Sbjct:   64 TANITRGALEKIPGREGMWRVPHNVKDASGNSAKVFYYKIAVEEVDVLESLQGSAEILHQEMSELFLMRIAVAALLVLLLFPLVWRVLMFVRVVLAAAKVVFFPYSMISSREDFKLGYGFLLRVKSMGMGSAIDRERKIATYW 206
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BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.440e-42
Identity = 75/117 (64.10%), Postives = 100/117 (85.47%), Query Frame = 1 
Query:    1 TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDAIFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKVVFFPYSMVGSREDFILG 351
            T NITRG+LE++PG+++MWRVPH+VKDA+GNSA  FY+NI VEE+DVL+++ G+ E LQ++  E   +RIAV  LLV+LLFP++W+VL+F+R VLAA+KVVFFPYSM+ SREDF LG
Sbjct:  486 TANITRGALEKIPGRERMWRVPHNVKDASGNSAKVFYYNIAVEEVDVLESLQGSAEILQQEMSELFFMRIAVAALLVLLLFPLVWRVLMFVRVVLAAAKVVFFPYSMISSREDFKLG 602
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BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Match: A0A835ZFQ6_9STRA (EGF_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.700e-21
Identity = 53/143 (37.06%), Postives = 85/143 (59.44%), Query Frame = 1 
Query:    1 TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDAIFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKVVFFPYSMVGSREDFILGYGLLLRVMSMGMMPAIEQERKIAIYW 429
            T +I +G LER P ++  WR+PH+V DA GN A   Y+ I+V ++D+L  + G       D +  + + +   VL  I    + W +L +++ ++ A K    PYS+V S+EDF +G+ L+LRV+SMGM+P  E+ R+ A  W
Sbjct:  821 TTDIQQGGLERDPARNYTWRIPHNVADAEGNVAETVYYVIQVTQVDMLSTLTGVTV----DPVMYQRVLLGGTVLAAIAALALAWWLLQWVQPLIQACKYWLNPYSLVNSKEDFDMGHDLVLRVVSMGMLPQKERRRRTAARW 959
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5818.13297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5P6_9PHAE1.590e-5764.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY1_ECTSI3.440e-4264.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFQ6_9STRA4.700e-2137.06EGF_3 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5818contigH-elongata_contig5818:7368..9243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.5e-34
Seed eggNOG ortholog2880.D7FVY1
KEGG koko:K05120
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
EC2.7.10.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01020,ko04050
Hectar predicted targeting categorysignal anchor
Exons4
Model size430
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5818.13297.1prot_H-elongata_contig5818.13297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5818 7368..9243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.9699166-CDS-H-elongata_contig5818:7367..74451622930943.9699166-CDS-H-elongata_contig5818:7367..7445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 7368..7445 +
1691679634.9173424-CDS-H-elongata_contig5818:7367..74451691679634.9173424-CDS-H-elongata_contig5818:7367..7445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 7368..7445 +
1622930943.9978092-CDS-H-elongata_contig5818:7659..77871622930943.9978092-CDS-H-elongata_contig5818:7659..7787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 7660..7787 +
1691679634.9331331-CDS-H-elongata_contig5818:7659..77871691679634.9331331-CDS-H-elongata_contig5818:7659..7787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 7660..7787 +
1622930944.0140493-CDS-H-elongata_contig5818:8122..82661622930944.0140493-CDS-H-elongata_contig5818:8122..8266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 8123..8266 +
1691679634.9450595-CDS-H-elongata_contig5818:8122..82661691679634.9450595-CDS-H-elongata_contig5818:8122..8266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 8123..8266 +
1622930944.0334296-CDS-H-elongata_contig5818:9164..92431622930944.0334296-CDS-H-elongata_contig5818:9164..9243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 9165..9243 +
1691679634.956283-CDS-H-elongata_contig5818:9164..92431691679634.956283-CDS-H-elongata_contig5818:9164..9243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 9165..9243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5818.13297.1

>prot_H-elongata_contig5818.13297.1 ID=prot_H-elongata_contig5818.13297.1|Name=mRNA_H-elongata_contig5818.13297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
TRNITRGSLERVPGKDKMWRVPHHVKDAAGNSASAFYFNIRVEEIDVLDA
IFGTEETLQRDTLERRGLRIAVIVLLVILLFPILWQVLLFLRTVLAASKV
VFFPYSMVGSREDFILGYGLLLRVMSMGMMPAIEQERKIAIYW
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mRNA from alignment at H-elongata_contig5818:7368..9243+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5818.13297.1 ID=mRNA_H-elongata_contig5818.13297.1|Name=mRNA_H-elongata_contig5818.13297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1876bp|location=Sequence derived from alignment at H-elongata_contig5818:7368..9243+ (Himanthalia elongata Himel1 dioecious)
ACCAGGAACATCACCCGGGGATCGCTCGAGCGAGTTCCTGGCAAGGATAA
AATGTGGAGGGTTCCACACCACGTGAAGGTGCGCGCTGGATCGAGCGTGA
TAATTTCTTACCTTTGGGCACTTCCACCAGCATCGCTCCAGTTGTGCGCC
GCCGATTCTCACCTCCGTGTAGCTAAAGCTTCATTTCCTCCCTTCTTTTT
TTCTAGCGTGCCAGCGTTGATGCTGCAAGGCACTCTGGTGCGTCTCTCCT
AAGCTTGCTCTACTTTTTTTCTCGGGCTTGTAACTCCGTCAGGATGCTGC
GGGCAACTCTGCAAGCGCTTTCTACTTCAATATCCGCGTTGAAGAGATTG
ACGTCCTGGATGCCATATTCGGCACCGAGGAGACTCTTCAGCGCGACACA
TTGGAGCGTCGAGGGCTGCGGTGAGAGTTCGAGCAAACGCTCATGGCCTT
CGAAAAAGAGAACACCAATAACACTTTCACAATAATCGGGGGAGGAACAG
GTCCATTCTTCGTGTTCGTGTATTTATCTTGAGGGTTGTCTGGCCGCGGA
TGTTTCTTCGCCAGGATTAACCCCCATTCCCTCTGGTATGTTGTCGCTTT
CTTTGTATCTCCTAATGCTGCAGAATTATATATTGGTCTCACCACGAAAA
ATCTCCGTTCAGATTTATCTTGTCCGCCAACCCCTCCGTCTTTATTATAT
GACTAACTTCCCTCGCGATGTGGTGTGGCGTGGTGCGATGCGATGCGATG
TACAGGATCGCCGTGATTGTACTGCTGGTGATACTGCTGTTCCCCATTTT
GTGGCAAGTATTGCTTTTTCTGCGAACGGTGCTAGCGGCATCGAAGGTGG
TTTTCTTCCCCTACTCGATGGTTGGATCGAGAGAAGACTTTATCTTGGGG
TGAGCGATTCCGAGGCGGGCTTTTGTTGGTGCACGTTCGTCTCTCTTTTT
TGTAACAGATAAAATAGTAGCTTGTTGGAAAACCCTAGAGCTATCACAGA
ATTAGGAATCCGCCAGGAGTATTCATGGGCAGATTATAGTCTATATAGTC
GTGTATATAGTGTGCGTGCGACGCCTATGCGTTCGTTCGCGACGAGATCA
AGGTCCCTTTGCAATACTTTGGGGGCAATATTAACCTATACCATGCCCGG
TACGGCGTCGAAAACACAGTCTGGCTGGCTATTAGGATGTAGGTAACGTT
AAGACAGGAAATGCGTTTTTGTCGTAAGTACACCCACTCACTATAGAGAT
GGATTGCCTCTATTATAGTGACATGGAGCTGTAAAATTATCTTTCTAAGT
CATGTGGGAGTTCATGCTGTGTGTCTTCTGAGCTCTTAGACCTTGGTCGA
ACAACACATGGTGTGCGTGCGGCGCTTATGCGTTCACGCAGGGGTCAAAG
ACCCTTTGCGGTACTTGGAGTATAGTATATAGTGATGATAGCGATAACGA
TAACGCCCACTGGCGTGCAAAATTTGTTCCTGGTGTGGCCAGTGTCCAAT
CAACCCATCACGGCATATCCTGTTTGGCGTAGGAAACGCGAGAATTGTGA
CTAAAATCTGGTAAAATCCTTGTGAAGCGAGAGTATTAGCATTGTTGGGA
TGTGTGGTCTATTTCCGTCAGGATACGAGATGTGTTTACCATAAATACTA
AATACCCCGCCGCCCCCTCTCCCTCCCTCTCTGATGACCGACTCGCTGTA
TTTCGCGTTGAGGTGTAAGTCTATATTTTTGTTTGAAGGGTAACCCATAC
CCACCGACTGGTCTGTCCGCTTCGATTTTTTTTTGTCTTGCCTCCAGGTA
TGGGTTACTGCTGCGCGTAATGTCGATGGGTATGATGCCTGCCATCGAGC
AGGAGCGCAAGATCGCGATCTACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig5818:7368..9243+

>mRNA_H-elongata_contig5818.13297.1 ID=mRNA_H-elongata_contig5818.13297.1|Name=mRNA_H-elongata_contig5818.13297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig5818:7368..9243+ (Himanthalia elongata Himel1 dioecious)
ACCAGGAACATCACCCGGGGATCGCTCGAGCGAGTTCCTGGCAAGGATAA
AATGTGGAGGGTTCCACACCACGTGAAGACCAGGAACATCACCCGGGGAT
CGCTCGAGCGAGTTCCTGGCAAGGATAAAATGTGGAGGGTTCCACACCAC
GTGAAGGATGCTGCGGGCAACTCTGCAAGCGCTTTCTACTTCAATATCCG
CGTTGAAGAGATTGACGTCCTGGATGCCATATTCGGCACCGAGGAGACTC
TTCAGCGCGACACATTGGAGCGTCGAGGGCTGCGGATGCTGCGGGCAACT
CTGCAAGCGCTTTCTACTTCAATATCCGCGTTGAAGAGATTGACGTCCTG
GATGCCATATTCGGCACCGAGGAGACTCTTCAGCGCGACACATTGGAGCG
TCGAGGGCTGCGGATCGCCGTGATTGTACTGCTGGTGATACTGCTGTTCC
CCATTTTGTGGCAAGTATTGCTTTTTCTGCGAACGGTGCTAGCGGCATCG
AAGGTGGTTTTCTTCCCCTACTCGATGGTTGGATCGAGAGAAGACTTTAT
CTTGGGGATCGCCGTGATTGTACTGCTGGTGATACTGCTGTTCCCCATTT
TGTGGCAAGTATTGCTTTTTCTGCGAACGGTGCTAGCGGCATCGAAGGTG
GTTTTCTTCCCCTACTCGATGGTTGGATCGAGAGAAGACTTTATCTTGGG
GTATGGGTTACTGCTGCGCGTAATGTCGATGGGTATGATGCCTGCCATCG
AGCAGGAGCGCAAGATCGCGATCTACTGGGTATGGGTTACTGCTGCGCGT
AATGTCGATGGGTATGATGCCTGCCATCGAGCAGGAGCGCAAGATCGCGA
TCTACTGG
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