mRNA_H-elongata_contig57991.13271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57991.13271.1
Unique NamemRNA_H-elongata_contig57991.13271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A6H5JTL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.550e-17
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 GVGTMLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 141
            GVGT+++G LA SCE +IVGLLQLFT+C+I+GWVWSI WGWEL+EVS
Sbjct:   34 GVGTIIVGALACSCETLIVGLLQLFTSCIIIGWVWSIWWGWELLEVS 80
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A6H5K3J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.840e-9
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 GVGTMLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELME 135
            G GT++ G+  F  + V+VG+LQ+ TA +++GWVWSI+WGWEL +
Sbjct:   14 GAGTIVAGICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 58
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A6H5JZT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.400e-8
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 GVGTMLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELME 135
            G GT++ G+  F  + V+VG+LQ+ TA +++GWVWSI+WGWEL +
Sbjct:   29 GAGTIVAGICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 73
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: D7FIX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIX6_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.290e-8
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 GVGTMLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 141
            G+GT++ G L    + +  G+LQL T  L+VGWVWS+MWGWEL  ++
Sbjct:   31 GLGTVIAGFLTCKLKSIFTGILQLVTTSLVVGWVWSVMWGWELWTLA 77
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A078AL46_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AL46_STYLE)

HSP 1 Score: 49.7 bits (117), Expect = 1.230e-6
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 GVGTMLIGLLA---FSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 141
            GVGTM+ G ++   FS   ++VGL+QL TA LIVGW+WSI WG+ + + S
Sbjct:   32 GVGTMITGCISKEGFSVYTILVGLVQLLTAWLIVGWIWSIFWGYLIFKKS 81
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A7S0UD76_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UD76_HEMAN)

HSP 1 Score: 47.4 bits (111), Expect = 1.650e-5
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 GVGTMLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 141
            GVG+M+ G +      VI+G+LQL T   I+GW+WSI WGW +   S
Sbjct:   52 GVGSMVAGAMESKWSTVIIGVLQLITCWFILGWIWSIWWGWLIFSKS 98
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BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A7S0VWA5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VWA5_9CRYP)

HSP 1 Score: 47.4 bits (111), Expect = 2.760e-5
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 GVGTMLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 141
            GVG+M+ G +      VI+G+LQL T   I+GW+WSI WGW +   S
Sbjct:   81 GVGSMVAGAMESKWSTVIIGVLQLLTCWFILGWIWSIWWGWLIFSKS 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JTL1_9PHAE1.550e-1774.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J7_9PHAE9.840e-951.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZT6_9PHAE1.400e-851.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX6_ECTSI4.290e-848.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A078AL46_STYLE1.230e-652.00Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A7S0UD76_HEMAN1.650e-546.81Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VWA5_9CRYP2.760e-546.81Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57991contigH-elongata_contig57991:2310..2450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size141
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.5485935-UTR-H-elongata_contig57991:2309..23211622930940.5485935-UTR-H-elongata_contig57991:2309..2321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57991 2310..2321 +
1691679633.4207544-UTR-H-elongata_contig57991:2309..23211691679633.4207544-UTR-H-elongata_contig57991:2309..2321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57991 2310..2321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.5729084-CDS-H-elongata_contig57991:2321..24501622930940.5729084-CDS-H-elongata_contig57991:2321..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57991 2322..2450 +
1691679633.4284675-CDS-H-elongata_contig57991:2321..24501691679633.4284675-CDS-H-elongata_contig57991:2321..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57991 2322..2450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57991.13271.1prot_H-elongata_contig57991.13271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57991 2322..2450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57991.13271.1

>prot_H-elongata_contig57991.13271.1 ID=prot_H-elongata_contig57991.13271.1|Name=mRNA_H-elongata_contig57991.13271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS
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mRNA from alignment at H-elongata_contig57991:2310..2450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57991.13271.1 ID=mRNA_H-elongata_contig57991.13271.1|Name=mRNA_H-elongata_contig57991.13271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig57991:2310..2450+ (Himanthalia elongata Himel1 dioecious)
GGTGTGGGGACAATGTTAATCGGTCTCCTCGCGTTCAGCTGCGAGATCGT
CATCGTGGGTCTCTTGCAGCTCTTTACCGCCTGCCTGATCGTGGGATGGG
TTTGGTCCATCATGTGGGGCTGGGAGTTGATGGAGGTGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig57991:2310..2450+

>mRNA_H-elongata_contig57991.13271.1 ID=mRNA_H-elongata_contig57991.13271.1|Name=mRNA_H-elongata_contig57991.13271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig57991:2310..2450+ (Himanthalia elongata Himel1 dioecious)
ATGTTAATCGGTCTCCTCGCGTTCAGCTGCGAGATCGTCATCGTGGGTCT
CTTGCAGCTCTTTACCGCCTGCCTGATCGTGGGATGGGTTTGGTCCATCA
TGTGGGGCTGGGAGTTGATGGAGGTGTCGATGTTAATCGGTCTCCTCGCG
TTCAGCTGCGAGATCGTCATCGTGGGTCTCTTGCAGCTCTTTACCGCCTG
CCTGATCGTGGGATGGGTTTGGTCCATCATGTGGGGCTGGGAGTTGATGG
AGGTGTCG
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